Wall clock time and date at job start Tue Mar 31 2020 22:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46850 * 111.00048 * 2 1 4 4 C 1.53037 * 109.52256 * 185.84216 * 3 2 1 5 5 C 1.53121 * 109.27922 * 300.82079 * 4 3 2 6 6 C 1.53119 * 109.15016 * 57.66200 * 5 4 3 7 7 C 1.46849 * 111.00364 * 124.21100 * 2 1 3 8 8 H 1.08993 * 109.46033 * 294.16592 * 7 2 1 9 9 C 1.50705 * 109.45811 * 54.14217 * 7 2 1 10 10 O 1.21279 * 119.99951 * 20.02428 * 9 7 2 11 11 N 1.34777 * 119.99835 * 200.02046 * 9 7 2 12 12 C 1.47083 * 120.88040 * 359.71995 * 11 9 7 13 13 C 1.53241 * 108.51645 * 129.08593 * 12 11 9 14 14 N 1.46894 * 109.34123 * 53.83496 * 13 12 11 15 15 C 1.46897 * 111.00314 * 172.74248 * 14 13 12 16 16 C 1.50697 * 109.47067 * 59.55405 * 15 14 13 17 17 O 1.21294 * 120.00261 * 5.60118 * 16 15 14 18 18 N 1.34781 * 120.00075 * 185.59473 * 16 15 14 19 19 C 1.37096 * 119.99799 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00483 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00023 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99949 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00419 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47256 * 89.99550 * 23 21 19 25 25 H 1.48500 * 109.47122 * 210.00044 * 23 21 19 26 26 H 1.48508 * 109.46612 * 329.99784 * 23 21 19 27 27 C 1.46905 * 111.26805 * 296.89104 * 14 13 12 28 28 C 1.47074 * 120.88071 * 180.02562 * 11 9 7 29 29 H 1.09001 * 109.46759 * 295.78991 * 1 2 3 30 30 H 1.08997 * 109.46824 * 55.78416 * 1 2 3 31 31 H 1.09000 * 109.47017 * 175.79143 * 1 2 3 32 32 H 1.08996 * 109.46332 * 305.85333 * 3 2 1 33 33 H 1.08997 * 109.45974 * 65.82813 * 3 2 1 34 34 H 1.09002 * 109.50713 * 60.76172 * 4 3 2 35 35 H 1.09001 * 109.50297 * 180.84033 * 4 3 2 36 36 H 1.09000 * 109.52509 * 177.56222 * 5 4 3 37 37 H 1.08999 * 109.52652 * 297.75022 * 5 4 3 38 38 H 1.09007 * 109.48890 * 182.39425 * 6 5 4 39 39 H 1.08991 * 109.51237 * 62.27783 * 6 5 4 40 40 H 1.08993 * 109.62944 * 248.79671 * 12 11 9 41 41 H 1.09007 * 109.62602 * 9.38359 * 12 11 9 42 42 H 1.08996 * 109.49627 * 293.86826 * 13 12 11 43 43 H 1.09004 * 109.51181 * 173.80535 * 13 12 11 44 44 H 1.09003 * 109.47341 * 179.55520 * 15 14 13 45 45 H 1.08997 * 109.47071 * 299.56012 * 15 14 13 46 46 H 0.96989 * 120.00171 * 0.02562 * 18 16 15 47 47 H 0.97005 * 120.00534 * 180.02562 * 22 21 19 48 48 H 1.08993 * 109.49021 * 303.14652 * 27 14 13 49 49 H 1.08994 * 109.51552 * 183.07669 * 27 14 13 50 50 H 1.08994 * 109.62982 * 350.62382 * 28 11 9 51 51 H 1.08999 * 109.62887 * 111.00726 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1468 5 6 4.1189 0.5369 1.0143 6 6 3.5182 -0.8715 1.0204 7 6 1.9954 -0.7708 1.1337 8 1 1.7328 -0.2708 2.0659 9 6 1.3982 -2.1544 1.1205 10 8 0.9168 -2.5974 0.0993 11 7 1.3993 -2.8996 2.2436 12 6 1.9835 -2.3840 3.4910 13 6 0.9599 -2.5615 4.6176 14 7 0.5294 -3.9651 4.6670 15 6 -0.3197 -4.2145 5.8394 16 6 -1.5370 -3.3284 5.7756 17 8 -1.7348 -2.6390 4.7974 18 7 -2.4061 -3.3020 6.8054 19 6 -3.5137 -2.4963 6.7471 20 1 -3.6898 -1.8824 5.8761 21 6 -4.4095 -2.4686 7.8090 22 7 -4.1951 -3.2151 8.8690 23 14 -5.9191 -1.3713 7.7293 24 1 -7.0463 -2.1235 7.1219 25 1 -6.2923 -0.9424 9.1012 26 1 -5.6187 -0.1756 6.9013 27 6 -0.1559 -4.3562 3.4279 28 6 0.8223 -4.2524 2.2524 29 1 -0.3633 0.4471 0.9253 30 1 -0.3633 0.5779 -0.8498 31 1 -0.3633 -1.0249 -0.0754 32 1 1.5635 1.9257 -0.8330 33 1 1.7326 1.8608 0.9376 34 1 3.7814 0.8568 -1.0907 35 1 3.9099 2.3513 -0.1318 36 1 5.1998 0.4714 0.8904 37 1 3.8889 1.0353 1.9560 38 1 3.9102 -1.4304 1.8703 39 1 3.7812 -1.3835 0.0949 40 1 2.8897 -2.9410 3.7286 41 1 2.2201 -1.3263 3.3747 42 1 0.0970 -1.9228 4.4290 43 1 1.4147 -2.2869 5.5693 44 1 -0.6307 -5.2591 5.8473 45 1 0.2417 -3.9956 6.7477 46 1 -2.2478 -3.8529 7.5878 47 1 -4.8205 -3.1961 9.6102 48 1 -1.0032 -3.6926 3.2559 49 1 -0.5103 -5.3832 3.5163 50 1 0.2914 -4.4302 1.3173 51 1 1.6176 -4.9889 2.3676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113018849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:32 Heat of formation + Delta-G solvation = -47.492122 kcal Electronic energy + Delta-G solvation = -31235.356654 eV Core-core repulsion = 27169.939212 eV Total energy + Delta-G solvation = -4065.417442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70415 -39.29092 -38.10581 -36.88049 -34.59071 -33.78555 -33.49495 -31.84003 -31.38341 -30.60669 -28.75284 -26.95529 -25.73429 -24.39877 -23.77632 -23.38274 -22.83981 -21.09412 -20.01077 -19.44079 -18.79381 -17.93940 -17.24726 -16.33878 -16.10119 -15.59339 -15.23139 -15.18613 -14.96658 -14.68651 -14.60669 -14.48834 -14.30193 -13.97313 -13.88300 -13.61934 -13.43202 -13.23440 -13.10574 -12.73403 -12.33354 -12.08355 -11.86377 -11.75700 -11.64746 -11.56124 -11.43328 -11.25595 -11.10231 -11.02395 -10.92756 -10.84110 -10.69689 -10.61684 -10.47410 -10.32365 -9.55351 -9.47573 -9.33084 -8.59257 -8.39100 -8.07422 -7.51409 -6.52392 -3.93955 2.66459 2.93408 3.09332 3.19585 3.24791 3.74459 3.78070 4.08649 4.20317 4.35614 4.53402 4.67353 4.77111 4.89705 4.91756 4.98138 5.09859 5.10861 5.22014 5.26519 5.32390 5.37159 5.40628 5.45790 5.46500 5.59192 5.59999 5.65120 5.66563 5.70264 5.79635 5.84671 5.87372 5.90728 5.95505 6.01289 6.09772 6.12733 6.14391 6.43305 6.55179 6.62900 6.83282 6.94518 7.16730 7.29769 7.44446 7.51149 7.93619 8.27578 8.48095 9.05917 9.41524 9.91831 10.64022 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.002850 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.816587 B = 9820.712107 C =10724.328131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.520 5.520 3 C 0.055 3.945 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.069 3.931 8 H 0.063 0.937 9 C 0.521 3.479 10 O -0.528 6.528 11 N -0.606 5.606 12 C 0.113 3.887 13 C 0.022 3.978 14 N -0.512 5.512 15 C 0.042 3.958 16 C 0.404 3.596 17 O -0.594 6.594 18 N -0.554 5.554 19 C -0.303 4.303 20 H 0.102 0.898 21 C 0.025 3.975 22 N -0.897 5.897 23 Si 0.929 3.071 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.270 1.270 27 C 0.025 3.975 28 C 0.122 3.878 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.393 0.607 47 H 0.273 0.727 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.090 0.910 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.478 3.976 -10.380 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.073 4.073 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.145 4.145 7 C -0.042 4.042 8 H 0.081 0.919 9 C 0.309 3.691 10 O -0.404 6.404 11 N -0.340 5.340 12 C -0.010 4.010 13 C -0.106 4.106 14 N -0.235 5.235 15 C -0.090 4.090 16 C 0.190 3.810 17 O -0.482 6.482 18 N -0.189 5.189 19 C -0.433 4.433 20 H 0.120 0.880 21 C -0.177 4.177 22 N -0.538 5.538 23 Si 0.756 3.244 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.104 4.104 28 C -0.001 4.001 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.226 0.774 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.095 0.905 50 H 0.108 0.892 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.543 3.653 -11.782 20.636 hybrid contribution -1.816 1.043 1.530 2.593 sum 14.727 4.696 -10.252 18.548 Atomic orbital electron populations 1.22592 0.86292 1.04406 1.00096 1.61669 1.08491 1.12811 1.41553 1.22147 0.95594 0.88837 1.00730 1.21612 0.94450 1.00128 0.99420 1.21581 1.00106 0.95189 0.98838 1.21556 0.91615 0.98019 1.03312 1.21625 0.96378 0.92435 0.93803 0.91937 1.20329 0.79052 0.86792 0.82960 1.90645 1.45785 1.72475 1.31514 1.48122 1.59147 1.16735 1.09995 1.21925 0.96472 0.99159 0.83450 1.22674 0.99158 0.91011 0.97800 1.62448 1.38434 1.20280 1.02344 1.22057 0.92468 1.00020 0.94470 1.21079 0.86857 0.87972 0.85142 1.90423 1.77230 1.47394 1.33139 1.42053 1.21012 1.38902 1.16981 1.19702 0.99209 1.20488 1.03908 0.88015 1.25289 0.99576 0.97836 0.95025 1.69606 1.37927 1.39496 1.06766 0.85868 0.80956 0.80040 0.77511 1.20293 1.20795 1.19432 1.22686 0.97011 1.01844 0.88836 1.21692 0.96692 0.82352 0.99357 0.95871 0.91338 0.89216 0.90362 0.94832 0.90911 0.91390 0.91243 0.91929 0.90888 0.90387 0.90913 0.89996 0.90214 0.90492 0.89138 0.89253 0.77353 0.91694 0.90123 0.90548 0.89150 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.10 60.07 0.55 0.73 16 2 N -0.52 -6.62 4.51 -236.33 -1.07 -7.69 16 3 C 0.05 0.54 5.46 -3.83 -0.02 0.52 16 4 C -0.12 -0.96 6.09 -26.65 -0.16 -1.12 16 5 C -0.12 -0.93 6.00 -26.61 -0.16 -1.09 16 6 C -0.11 -1.04 5.18 -26.65 -0.14 -1.18 16 7 C 0.07 0.85 1.40 -68.87 -0.10 0.76 16 8 H 0.06 0.77 6.52 -51.93 -0.34 0.43 16 9 C 0.52 7.85 6.15 -10.98 -0.07 7.79 16 10 O -0.53 -9.59 13.98 5.56 0.08 -9.51 16 11 N -0.61 -8.55 3.01 -172.44 -0.52 -9.07 16 12 C 0.11 1.37 5.75 -3.60 -0.02 1.35 16 13 C 0.02 0.33 5.12 -3.70 -0.02 0.31 16 14 N -0.51 -7.91 4.83 -235.75 -1.14 -9.05 16 15 C 0.04 0.69 5.84 -4.98 -0.03 0.66 16 16 C 0.40 8.87 7.18 -10.98 -0.08 8.79 16 17 O -0.59 -14.78 11.25 5.55 0.06 -14.71 16 18 N -0.55 -13.44 5.29 -10.96 -0.06 -13.50 16 19 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 20 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.90 -23.82 13.05 55.50 0.72 -23.10 16 23 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.02 0.39 5.21 -3.68 -0.02 0.38 16 28 C 0.12 1.73 6.60 -3.58 -0.02 1.71 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 31 H 0.09 1.46 5.62 -51.93 -0.29 1.17 16 32 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.63 7.18 -51.93 -0.37 0.25 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.86 5.27 -51.93 -0.27 0.58 16 42 H 0.08 1.53 5.72 -51.93 -0.30 1.23 16 43 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 44 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.08 1.63 5.74 -51.93 -0.30 1.33 16 49 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 50 H 0.09 1.37 7.06 -51.93 -0.37 1.00 16 51 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -31.31 385.37 -10.06 -41.37 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -8.40 Total: 12.00 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -0.53 Total: 11.82 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -2.06 Total: -62.41 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.14 Total: -24.23 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.31 -10.06 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113018849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.122 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds