Wall clock time and date at job start Tue Mar 31 2020 22:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46850 * 111.00048 * 2 1 4 4 C 1.53037 * 109.52256 * 185.84216 * 3 2 1 5 5 C 1.53121 * 109.27922 * 300.82079 * 4 3 2 6 6 C 1.53119 * 109.15016 * 57.66200 * 5 4 3 7 7 C 1.46849 * 111.00364 * 124.21100 * 2 1 3 8 8 H 1.08993 * 109.46033 * 294.16592 * 7 2 1 9 9 C 1.50705 * 109.45811 * 54.14217 * 7 2 1 10 10 O 1.21279 * 119.99951 * 20.02428 * 9 7 2 11 11 N 1.34777 * 119.99835 * 200.02046 * 9 7 2 12 12 C 1.47083 * 120.88040 * 359.71995 * 11 9 7 13 13 C 1.53241 * 108.51645 * 129.08593 * 12 11 9 14 14 N 1.46894 * 109.34123 * 53.83496 * 13 12 11 15 15 C 1.46897 * 111.00314 * 172.74248 * 14 13 12 16 16 C 1.50697 * 109.47067 * 59.55405 * 15 14 13 17 17 O 1.21294 * 120.00261 * 5.60118 * 16 15 14 18 18 N 1.34781 * 120.00075 * 185.59473 * 16 15 14 19 19 C 1.37096 * 119.99799 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00483 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00023 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99949 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00419 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47256 * 89.99550 * 23 21 19 25 25 H 1.48500 * 109.47122 * 210.00044 * 23 21 19 26 26 H 1.48508 * 109.46612 * 329.99784 * 23 21 19 27 27 C 1.46905 * 111.26805 * 296.89104 * 14 13 12 28 28 C 1.47074 * 120.88071 * 180.02562 * 11 9 7 29 29 H 1.09001 * 109.46759 * 295.78991 * 1 2 3 30 30 H 1.08997 * 109.46824 * 55.78416 * 1 2 3 31 31 H 1.09000 * 109.47017 * 175.79143 * 1 2 3 32 32 H 1.08996 * 109.46332 * 305.85333 * 3 2 1 33 33 H 1.08997 * 109.45974 * 65.82813 * 3 2 1 34 34 H 1.09002 * 109.50713 * 60.76172 * 4 3 2 35 35 H 1.09001 * 109.50297 * 180.84033 * 4 3 2 36 36 H 1.09000 * 109.52509 * 177.56222 * 5 4 3 37 37 H 1.08999 * 109.52652 * 297.75022 * 5 4 3 38 38 H 1.09007 * 109.48890 * 182.39425 * 6 5 4 39 39 H 1.08991 * 109.51237 * 62.27783 * 6 5 4 40 40 H 1.08993 * 109.62944 * 248.79671 * 12 11 9 41 41 H 1.09007 * 109.62602 * 9.38359 * 12 11 9 42 42 H 1.08996 * 109.49627 * 293.86826 * 13 12 11 43 43 H 1.09004 * 109.51181 * 173.80535 * 13 12 11 44 44 H 1.09003 * 109.47341 * 179.55520 * 15 14 13 45 45 H 1.08997 * 109.47071 * 299.56012 * 15 14 13 46 46 H 0.96989 * 120.00171 * 0.02562 * 18 16 15 47 47 H 0.97005 * 120.00534 * 180.02562 * 22 21 19 48 48 H 1.08993 * 109.49021 * 303.14652 * 27 14 13 49 49 H 1.08994 * 109.51552 * 183.07669 * 27 14 13 50 50 H 1.08994 * 109.62982 * 350.62382 * 28 11 9 51 51 H 1.08999 * 109.62887 * 111.00726 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1468 5 6 4.1189 0.5369 1.0143 6 6 3.5182 -0.8715 1.0204 7 6 1.9954 -0.7708 1.1337 8 1 1.7328 -0.2708 2.0659 9 6 1.3982 -2.1544 1.1205 10 8 0.9168 -2.5974 0.0993 11 7 1.3993 -2.8996 2.2436 12 6 1.9835 -2.3840 3.4910 13 6 0.9599 -2.5615 4.6176 14 7 0.5294 -3.9651 4.6670 15 6 -0.3197 -4.2145 5.8394 16 6 -1.5370 -3.3284 5.7756 17 8 -1.7348 -2.6390 4.7974 18 7 -2.4061 -3.3020 6.8054 19 6 -3.5137 -2.4963 6.7471 20 1 -3.6898 -1.8824 5.8761 21 6 -4.4095 -2.4686 7.8090 22 7 -4.1951 -3.2151 8.8690 23 14 -5.9191 -1.3713 7.7293 24 1 -7.0463 -2.1235 7.1219 25 1 -6.2923 -0.9424 9.1012 26 1 -5.6187 -0.1756 6.9013 27 6 -0.1559 -4.3562 3.4279 28 6 0.8223 -4.2524 2.2524 29 1 -0.3633 0.4471 0.9253 30 1 -0.3633 0.5779 -0.8498 31 1 -0.3633 -1.0249 -0.0754 32 1 1.5635 1.9257 -0.8330 33 1 1.7326 1.8608 0.9376 34 1 3.7814 0.8568 -1.0907 35 1 3.9099 2.3513 -0.1318 36 1 5.1998 0.4714 0.8904 37 1 3.8889 1.0353 1.9560 38 1 3.9102 -1.4304 1.8703 39 1 3.7812 -1.3835 0.0949 40 1 2.8897 -2.9410 3.7286 41 1 2.2201 -1.3263 3.3747 42 1 0.0970 -1.9228 4.4290 43 1 1.4147 -2.2869 5.5693 44 1 -0.6307 -5.2591 5.8473 45 1 0.2417 -3.9956 6.7477 46 1 -2.2478 -3.8529 7.5878 47 1 -4.8205 -3.1961 9.6102 48 1 -1.0032 -3.6926 3.2559 49 1 -0.5103 -5.3832 3.5163 50 1 0.2914 -4.4302 1.3173 51 1 1.6176 -4.9889 2.3676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113018849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:32 Heat of formation + Delta-G solvation = -71.565319 kcal Electronic energy + Delta-G solvation = -31236.400546 eV Core-core repulsion = 27169.939212 eV Total energy + Delta-G solvation = -4066.461334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.82301 -40.75650 -39.28093 -38.24067 -36.18720 -35.33214 -34.41047 -33.35718 -32.82936 -31.65433 -30.09196 -27.96997 -27.31126 -25.73547 -25.04616 -24.40720 -23.78905 -22.25123 -21.21482 -20.77093 -20.15036 -19.68875 -18.40711 -17.80817 -17.41659 -16.67686 -16.61519 -16.35081 -16.24930 -16.09882 -15.88220 -15.70663 -15.49311 -15.33674 -15.23133 -14.92685 -14.68267 -14.17908 -14.02279 -13.81120 -13.62243 -13.50676 -13.28183 -13.04338 -12.94784 -12.79451 -12.72428 -12.48572 -12.38357 -12.26354 -12.15686 -12.13404 -12.05187 -11.82961 -11.63247 -11.42277 -11.34581 -11.01734 -10.59636 -10.03076 -9.78838 -9.37795 -9.05036 -8.50334 -6.00038 1.31966 1.37012 1.48604 1.51110 1.86142 1.98518 2.24941 2.83291 2.92882 3.15902 3.23104 3.35968 3.76911 3.84095 3.93779 4.00367 4.02951 4.09432 4.13773 4.28092 4.32802 4.34036 4.35784 4.44179 4.46403 4.53999 4.57801 4.60183 4.68266 4.69566 4.73264 4.78398 4.83387 4.92349 4.98783 5.03806 5.09316 5.17278 5.23222 5.24436 5.37156 5.42807 5.44920 5.77810 5.86501 5.97352 5.98768 6.04268 6.38789 6.55042 7.08126 7.12111 7.51751 8.07177 8.64987 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.002850 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.816587 B = 9820.712107 C =10724.328131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.534 5.534 3 C 0.051 3.949 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.102 4.102 7 C 0.072 3.928 8 H 0.065 0.935 9 C 0.514 3.486 10 O -0.568 6.568 11 N -0.609 5.609 12 C 0.118 3.882 13 C 0.022 3.978 14 N -0.495 5.495 15 C 0.050 3.950 16 C 0.406 3.594 17 O -0.625 6.625 18 N -0.569 5.569 19 C -0.333 4.333 20 H 0.074 0.926 21 C -0.009 4.009 22 N -0.917 5.917 23 Si 0.988 3.012 24 H -0.273 1.273 25 H -0.268 1.268 26 H -0.275 1.275 27 C 0.030 3.970 28 C 0.127 3.873 29 H 0.015 0.985 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.033 0.967 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.032 0.968 49 H 0.089 0.911 50 H 0.074 0.926 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.980 4.392 -9.623 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.076 4.076 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.140 4.140 7 C -0.040 4.040 8 H 0.082 0.918 9 C 0.303 3.697 10 O -0.447 6.447 11 N -0.342 5.342 12 C -0.004 4.004 13 C -0.107 4.107 14 N -0.217 5.217 15 C -0.082 4.082 16 C 0.193 3.807 17 O -0.513 6.513 18 N -0.205 5.205 19 C -0.463 4.463 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.557 5.557 23 Si 0.812 3.188 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.200 1.200 27 C -0.098 4.098 28 C 0.004 3.996 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.051 0.949 43 H 0.115 0.885 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.231 0.769 47 H 0.088 0.912 48 H 0.051 0.949 49 H 0.108 0.892 50 H 0.092 0.908 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.077 4.066 -11.003 22.395 hybrid contribution -2.574 0.901 1.227 2.990 sum 16.503 4.967 -9.776 19.814 Atomic orbital electron populations 1.22448 0.87567 1.02442 1.00320 1.61701 1.07554 1.14687 1.41988 1.22284 0.97066 0.87126 1.01095 1.21624 0.92830 1.01516 0.99321 1.21600 1.01085 0.93613 0.99030 1.21583 0.89371 0.99671 1.03355 1.21696 0.98068 0.90481 0.93723 0.91787 1.20921 0.78467 0.87762 0.82592 1.90621 1.47521 1.73459 1.33068 1.48270 1.58783 1.16615 1.10569 1.22072 0.96212 1.00864 0.81246 1.22695 0.98332 0.89627 1.00041 1.62557 1.37025 1.20486 1.01662 1.22182 0.90157 0.99717 0.96097 1.22212 0.87489 0.87296 0.83664 1.90449 1.78119 1.48557 1.34165 1.42116 1.21145 1.39362 1.17903 1.19584 1.01233 1.21776 1.03706 0.90810 1.25975 1.01683 0.98859 0.94461 1.69656 1.38817 1.40174 1.07079 0.85008 0.77760 0.78143 0.77924 1.19829 1.19299 1.20037 1.22585 0.96008 1.01358 0.89897 1.21617 0.96932 0.83357 0.97702 0.96678 0.89873 0.92425 0.89735 0.94667 0.91577 0.89150 0.89217 0.91083 0.89226 0.91701 0.87798 0.88196 0.94857 0.88497 0.87003 0.86495 0.76916 0.91211 0.94942 0.89237 0.90758 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.10 127.69 1.16 1.74 16 2 N -0.53 -13.55 4.51 -901.60 -4.06 -17.62 16 3 C 0.05 0.95 5.46 86.33 0.47 1.42 16 4 C -0.12 -1.58 6.09 30.65 0.19 -1.39 16 5 C -0.12 -1.44 6.00 30.67 0.18 -1.26 16 6 C -0.10 -1.76 5.18 30.65 0.16 -1.60 16 7 C 0.07 1.73 1.40 44.19 0.06 1.79 16 8 H 0.06 1.51 6.52 -2.39 -0.02 1.49 16 9 C 0.51 15.66 6.15 87.66 0.54 16.20 16 10 O -0.57 -21.53 13.98 -3.03 -0.04 -21.57 16 11 N -0.61 -16.83 3.01 -817.87 -2.46 -19.29 16 12 C 0.12 2.59 5.75 86.35 0.50 3.09 16 13 C 0.02 0.63 5.12 86.39 0.44 1.07 16 14 N -0.49 -14.50 4.83 -899.76 -4.34 -18.85 16 15 C 0.05 1.58 5.84 85.56 0.50 2.08 16 16 C 0.41 18.11 7.18 87.66 0.63 18.74 16 17 O -0.62 -32.43 11.25 -3.07 -0.03 -32.46 16 18 N -0.57 -28.11 5.29 -306.98 -1.62 -29.73 16 19 C -0.33 -18.58 9.68 84.04 0.81 -17.77 16 20 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 21 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 22 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 23 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 C 0.03 0.97 5.21 86.40 0.45 1.42 16 28 C 0.13 3.56 6.60 86.36 0.57 4.13 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 31 H 0.06 2.02 5.62 -2.39 -0.01 2.01 16 32 H 0.08 1.42 8.09 -2.39 -0.02 1.41 16 33 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 1.24 7.18 -2.38 -0.02 1.22 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 1.84 5.27 -2.38 -0.01 1.83 16 42 H 0.03 1.30 5.72 -2.39 -0.01 1.29 16 43 H 0.10 2.39 8.11 -2.38 -0.02 2.38 16 44 H 0.11 3.12 8.07 -2.39 -0.02 3.10 16 45 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 46 H 0.40 18.62 7.90 -92.72 -0.73 17.89 16 47 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 48 H 0.03 1.37 5.74 -2.39 -0.01 1.36 16 49 H 0.09 2.58 8.06 -2.39 -0.02 2.56 16 50 H 0.07 2.34 7.06 -2.39 -0.02 2.32 16 51 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -71.90 385.37 -2.92 -74.82 By element: Atomic # 1 Polarization: 38.51 SS G_CDS: 0.20 Total: 38.71 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 7.13 Total: 29.63 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -12.21 Total: -133.84 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -0.08 Total: -54.03 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.90 -2.92 -74.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113018849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.257 kcal (2) G-P(sol) polarization free energy of solvation -71.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds