Wall clock time and date at job start Tue Mar 31 2020 22:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46849 * 111.00050 * 2 1 4 4 C 1.53034 * 109.52390 * 185.83975 * 3 2 1 5 5 C 1.53123 * 109.27791 * 300.82888 * 4 3 2 6 6 C 1.50704 * 109.51825 * 177.55780 * 5 4 3 7 7 O 1.21277 * 120.00335 * 325.26341 * 6 5 4 8 8 N 1.34775 * 119.99623 * 145.26137 * 6 5 4 9 9 C 1.47076 * 120.88325 * 5.08069 * 8 6 5 10 10 C 1.53702 * 108.27971 * 128.75429 * 9 8 6 11 11 N 1.46899 * 109.25319 * 54.07884 * 10 9 8 12 12 C 1.46902 * 110.99868 * 172.60979 * 11 10 9 13 13 C 1.50704 * 109.47032 * 294.30386 * 12 11 10 14 14 O 1.21287 * 119.99923 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99753 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00066 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00095 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00362 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99916 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46724 * 89.99768 * 20 18 16 22 22 H 1.48495 * 109.47194 * 209.99438 * 20 18 16 23 23 H 1.48498 * 109.46741 * 329.99876 * 20 18 16 24 24 C 1.46900 * 111.27522 * 296.76018 * 11 10 9 25 25 C 1.47082 * 120.87971 * 185.35948 * 8 6 5 26 26 C 1.53115 * 109.16425 * 57.65311 * 5 4 3 27 27 C 1.46845 * 111.00218 * 124.21813 * 2 1 3 28 28 H 1.08996 * 109.47025 * 59.99379 * 1 2 3 29 29 H 1.08999 * 109.46980 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46528 * 299.99532 * 1 2 3 31 31 H 1.09008 * 109.45743 * 65.82805 * 3 2 1 32 32 H 1.08996 * 109.46821 * 305.86532 * 3 2 1 33 33 H 1.08999 * 109.50034 * 60.76706 * 4 3 2 34 34 H 1.09000 * 109.50311 * 180.84429 * 4 3 2 35 35 H 1.08999 * 109.52422 * 297.74138 * 5 4 3 36 36 H 1.09003 * 109.62956 * 248.51858 * 9 8 6 37 37 H 1.09002 * 109.63126 * 9.10154 * 9 8 6 38 38 H 1.09000 * 109.64405 * 294.08163 * 10 9 8 39 39 H 1.08991 * 109.42237 * 173.94956 * 10 9 8 40 40 H 1.09002 * 109.47293 * 54.30228 * 12 11 10 41 41 H 1.08996 * 109.47122 * 174.30246 * 12 11 10 42 42 H 0.97005 * 120.00669 * 0.02562 * 15 13 12 43 43 H 0.96997 * 120.00283 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.49089 * 303.15033 * 24 11 10 45 45 H 1.08999 * 109.49481 * 183.06578 * 24 11 10 46 46 H 1.09002 * 109.62577 * 350.89495 * 25 8 6 47 47 H 1.08991 * 109.63250 * 111.47823 * 25 8 6 48 48 H 1.09004 * 109.50551 * 62.28202 * 26 5 4 49 49 H 1.08993 * 109.50251 * 182.40134 * 26 5 4 50 50 H 1.08994 * 109.46167 * 54.14139 * 27 2 1 51 51 H 1.09006 * 109.45709 * 294.17533 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1468 5 6 4.1188 0.5368 1.0143 6 6 5.6134 0.4462 0.8429 7 8 6.0924 0.3624 -0.2681 8 7 6.4176 0.4582 1.9244 9 6 5.8553 0.4473 3.2834 10 6 6.5340 -0.6806 4.0768 11 7 7.9916 -0.5110 4.0095 12 6 8.6738 -1.4628 4.8965 13 6 8.3343 -1.1456 6.3301 14 8 7.5969 -0.2177 6.5876 15 7 8.8499 -1.8931 7.3259 16 6 8.5407 -1.6049 8.6301 17 1 7.8841 -0.7786 8.8595 18 6 9.0727 -2.3751 9.6569 19 7 9.8720 -3.3803 9.3779 20 14 8.6518 -1.9820 11.4340 21 1 7.4363 -2.7358 11.8331 22 1 9.7860 -2.3724 12.3093 23 1 8.3985 -0.5253 11.5719 24 6 8.4795 -0.6349 2.6295 25 6 7.8806 0.4888 1.7768 26 6 3.5182 -0.8716 1.0206 27 6 1.9954 -0.7709 1.1336 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.7325 1.8608 0.9377 32 1 1.5634 1.9259 -0.8328 33 1 3.7813 0.8569 -1.0907 34 1 3.9099 2.3513 -0.1317 35 1 3.8889 1.0352 1.9560 36 1 6.0469 1.4054 3.7666 37 1 4.7814 0.2672 3.2340 38 1 6.2600 -1.6453 3.6497 39 1 6.2103 -0.6377 5.1167 40 1 8.3479 -2.4761 4.6616 41 1 9.7514 -1.3853 4.7526 42 1 9.4399 -2.6350 7.1201 43 1 10.2431 -3.9182 10.0947 44 1 8.1783 -1.6002 2.2225 45 1 9.5668 -0.5588 2.6199 46 1 8.1464 0.3360 0.7308 47 1 8.2631 1.4507 2.1179 48 1 3.7813 -1.3837 0.0950 49 1 3.9100 -1.4305 1.8704 50 1 1.5635 -1.7716 1.1240 51 1 1.7325 -0.2710 2.0659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113295454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:15 Heat of formation + Delta-G solvation = -53.994188 kcal Electronic energy + Delta-G solvation = -30249.652507 eV Core-core repulsion = 26183.953114 eV Total energy + Delta-G solvation = -4065.699393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68024 -39.11807 -38.36953 -37.20886 -34.56237 -33.97506 -33.67253 -31.30498 -31.24969 -31.02018 -28.96678 -27.43826 -25.71314 -24.19859 -23.81751 -23.49187 -23.15341 -21.27061 -20.14446 -19.29511 -18.75185 -17.92570 -17.32526 -16.47617 -16.09367 -15.56325 -15.51777 -15.27760 -15.09431 -14.93180 -14.82875 -14.60802 -14.22002 -14.01322 -13.82667 -13.64710 -13.61485 -13.43405 -12.81987 -12.75985 -12.70232 -12.43185 -11.98946 -11.91723 -11.68369 -11.59701 -11.55862 -11.43711 -11.32184 -11.18366 -11.15260 -10.86665 -10.80247 -10.76201 -10.42467 -10.25836 -9.67401 -9.51686 -8.86446 -8.68196 -8.40012 -8.02632 -7.92552 -6.45691 -3.86717 2.53441 2.89283 3.14414 3.23700 3.29168 3.57275 3.84278 3.91392 4.19227 4.24789 4.45678 4.49161 4.75306 4.80669 4.88630 4.97536 4.99843 5.05567 5.07428 5.15037 5.18211 5.20058 5.23549 5.29445 5.33170 5.39672 5.40937 5.48470 5.49533 5.52134 5.61116 5.69236 5.72759 5.77715 5.83112 5.87753 5.89825 6.07322 6.11443 6.16369 6.21789 6.47403 6.69907 6.72134 7.11549 7.27718 7.38981 7.51224 8.01850 8.10589 8.56880 9.13674 9.49868 10.00931 10.71906 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.002277 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.327302 B =12294.911287 C =13434.969007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.057 3.943 4 C -0.099 4.099 5 C -0.109 4.109 6 C 0.522 3.478 7 O -0.546 6.546 8 N -0.612 5.612 9 C 0.113 3.887 10 C 0.040 3.960 11 N -0.515 5.515 12 C 0.046 3.954 13 C 0.443 3.557 14 O -0.579 6.579 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.041 3.959 25 C 0.118 3.882 26 C -0.105 4.105 27 C 0.058 3.942 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.027 0.973 39 H 0.116 0.884 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.035 0.965 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.079 0.921 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.722 4.907 -17.451 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.137 4.137 5 C -0.131 4.131 6 C 0.310 3.690 7 O -0.423 6.423 8 N -0.346 5.346 9 C -0.010 4.010 10 C -0.089 4.089 11 N -0.239 5.239 12 C -0.085 4.085 13 C 0.229 3.771 14 O -0.464 6.464 15 N -0.199 5.199 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.088 4.088 25 C -0.005 4.005 26 C -0.143 4.143 27 C -0.070 4.070 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.133 0.867 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.091 0.909 50 H 0.098 0.902 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.588 5.598 -17.994 22.662 hybrid contribution -0.110 -0.836 1.474 1.698 sum -12.699 4.762 -16.520 21.374 Atomic orbital electron populations 1.22353 0.87128 1.02168 1.00669 1.61919 1.07631 1.13873 1.43502 1.22108 0.95248 0.89073 1.00686 1.21457 0.93630 0.99920 0.98735 1.21419 0.91614 0.98846 1.01188 1.20571 0.88867 0.75556 0.83988 1.90662 1.76850 1.50147 1.24667 1.48299 1.06908 1.72851 1.06497 1.22042 0.97504 1.00645 0.80780 1.22717 0.87672 0.95410 1.03061 1.61498 1.04811 1.51759 1.05879 1.21853 0.99690 0.93773 0.93152 1.19707 0.85753 0.85754 0.85931 1.90470 1.40203 1.31782 1.83897 1.41879 1.43249 1.29116 1.05678 1.19686 1.27528 1.14634 0.81012 0.87884 1.25273 0.96418 0.95756 1.00507 1.69609 1.32006 1.18647 1.33947 0.85858 0.77880 0.78994 0.81569 1.20427 1.20918 1.19395 1.22502 1.00350 0.97247 0.88706 1.21692 0.78970 0.99198 1.00630 1.21528 0.94465 0.94770 1.03541 1.22084 0.94860 0.98589 0.91494 0.91319 0.91302 0.95632 0.94728 0.90354 0.89655 0.91209 0.89218 0.90051 0.89675 0.95467 0.86657 0.93457 0.89179 0.77473 0.91835 0.94716 0.89538 0.88885 0.90638 0.90160 0.90872 0.90219 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.59 60.07 0.58 0.74 16 2 N -0.54 -4.65 4.91 -242.96 -1.19 -5.84 16 3 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 4 C -0.10 -0.94 5.08 -26.65 -0.14 -1.08 16 5 C -0.11 -1.09 1.79 -91.65 -0.16 -1.26 16 6 C 0.52 6.74 6.70 -10.98 -0.07 6.66 16 7 O -0.55 -8.72 15.68 5.56 0.09 -8.63 16 8 N -0.61 -7.73 3.00 -172.18 -0.52 -8.25 16 9 C 0.11 1.39 6.32 -3.36 -0.02 1.37 16 10 C 0.04 0.59 5.27 -3.46 -0.02 0.58 16 11 N -0.51 -8.13 4.37 -235.46 -1.03 -9.16 16 12 C 0.05 0.79 5.45 -4.97 -0.03 0.77 16 13 C 0.44 9.96 7.44 -10.99 -0.08 9.88 16 14 O -0.58 -14.67 13.91 5.55 0.08 -14.60 16 15 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 16 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 17 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 20 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 C 0.04 0.53 5.62 -3.70 -0.02 0.51 16 25 C 0.12 1.47 6.61 -3.60 -0.02 1.45 16 26 C -0.10 -0.98 5.29 -26.65 -0.14 -1.13 16 27 C 0.06 0.47 5.46 -3.84 -0.02 0.45 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.03 0.27 8.14 -51.92 -0.42 -0.16 16 32 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.08 0.97 7.78 -51.93 -0.40 0.56 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.80 6.24 -51.93 -0.32 0.48 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 0.85 5.50 -51.93 -0.29 0.56 16 38 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.12 2.06 5.77 -51.93 -0.30 1.76 16 40 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 42 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.99 7.99 -51.93 -0.41 0.57 16 46 H 0.09 1.17 7.04 -51.93 -0.37 0.80 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.66 7.97 -51.93 -0.41 0.25 16 50 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 51 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 395.82 15.07 5.96 5.96 Total: -1.00 -31.62 395.82 -10.05 -41.66 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -8.67 Total: 8.83 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -0.41 Total: 11.62 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -2.07 Total: -60.43 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.16 Total: -23.23 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.62 -10.05 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113295454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.329 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds