Wall clock time and date at job start Tue Mar 31 2020 22:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46849 * 111.00050 * 2 1 4 4 C 1.53034 * 109.52390 * 185.83975 * 3 2 1 5 5 C 1.53123 * 109.27791 * 300.82888 * 4 3 2 6 6 C 1.50704 * 109.51825 * 177.55780 * 5 4 3 7 7 O 1.21277 * 120.00335 * 325.26341 * 6 5 4 8 8 N 1.34775 * 119.99623 * 145.26137 * 6 5 4 9 9 C 1.47076 * 120.88325 * 5.08069 * 8 6 5 10 10 C 1.53702 * 108.27971 * 128.75429 * 9 8 6 11 11 N 1.46899 * 109.25319 * 54.07884 * 10 9 8 12 12 C 1.46902 * 110.99868 * 172.60979 * 11 10 9 13 13 C 1.50704 * 109.47032 * 294.30386 * 12 11 10 14 14 O 1.21287 * 119.99923 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99753 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00066 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00095 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00362 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99916 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46724 * 89.99768 * 20 18 16 22 22 H 1.48495 * 109.47194 * 209.99438 * 20 18 16 23 23 H 1.48498 * 109.46741 * 329.99876 * 20 18 16 24 24 C 1.46900 * 111.27522 * 296.76018 * 11 10 9 25 25 C 1.47082 * 120.87971 * 185.35948 * 8 6 5 26 26 C 1.53115 * 109.16425 * 57.65311 * 5 4 3 27 27 C 1.46845 * 111.00218 * 124.21813 * 2 1 3 28 28 H 1.08996 * 109.47025 * 59.99379 * 1 2 3 29 29 H 1.08999 * 109.46980 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46528 * 299.99532 * 1 2 3 31 31 H 1.09008 * 109.45743 * 65.82805 * 3 2 1 32 32 H 1.08996 * 109.46821 * 305.86532 * 3 2 1 33 33 H 1.08999 * 109.50034 * 60.76706 * 4 3 2 34 34 H 1.09000 * 109.50311 * 180.84429 * 4 3 2 35 35 H 1.08999 * 109.52422 * 297.74138 * 5 4 3 36 36 H 1.09003 * 109.62956 * 248.51858 * 9 8 6 37 37 H 1.09002 * 109.63126 * 9.10154 * 9 8 6 38 38 H 1.09000 * 109.64405 * 294.08163 * 10 9 8 39 39 H 1.08991 * 109.42237 * 173.94956 * 10 9 8 40 40 H 1.09002 * 109.47293 * 54.30228 * 12 11 10 41 41 H 1.08996 * 109.47122 * 174.30246 * 12 11 10 42 42 H 0.97005 * 120.00669 * 0.02562 * 15 13 12 43 43 H 0.96997 * 120.00283 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.49089 * 303.15033 * 24 11 10 45 45 H 1.08999 * 109.49481 * 183.06578 * 24 11 10 46 46 H 1.09002 * 109.62577 * 350.89495 * 25 8 6 47 47 H 1.08991 * 109.63250 * 111.47823 * 25 8 6 48 48 H 1.09004 * 109.50551 * 62.28202 * 26 5 4 49 49 H 1.08993 * 109.50251 * 182.40134 * 26 5 4 50 50 H 1.08994 * 109.46167 * 54.14139 * 27 2 1 51 51 H 1.09006 * 109.45709 * 294.17533 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1468 5 6 4.1188 0.5368 1.0143 6 6 5.6134 0.4462 0.8429 7 8 6.0924 0.3624 -0.2681 8 7 6.4176 0.4582 1.9244 9 6 5.8553 0.4473 3.2834 10 6 6.5340 -0.6806 4.0768 11 7 7.9916 -0.5110 4.0095 12 6 8.6738 -1.4628 4.8965 13 6 8.3343 -1.1456 6.3301 14 8 7.5969 -0.2177 6.5876 15 7 8.8499 -1.8931 7.3259 16 6 8.5407 -1.6049 8.6301 17 1 7.8841 -0.7786 8.8595 18 6 9.0727 -2.3751 9.6569 19 7 9.8720 -3.3803 9.3779 20 14 8.6518 -1.9820 11.4340 21 1 7.4363 -2.7358 11.8331 22 1 9.7860 -2.3724 12.3093 23 1 8.3985 -0.5253 11.5719 24 6 8.4795 -0.6349 2.6295 25 6 7.8806 0.4888 1.7768 26 6 3.5182 -0.8716 1.0206 27 6 1.9954 -0.7709 1.1336 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.7325 1.8608 0.9377 32 1 1.5634 1.9259 -0.8328 33 1 3.7813 0.8569 -1.0907 34 1 3.9099 2.3513 -0.1317 35 1 3.8889 1.0352 1.9560 36 1 6.0469 1.4054 3.7666 37 1 4.7814 0.2672 3.2340 38 1 6.2600 -1.6453 3.6497 39 1 6.2103 -0.6377 5.1167 40 1 8.3479 -2.4761 4.6616 41 1 9.7514 -1.3853 4.7526 42 1 9.4399 -2.6350 7.1201 43 1 10.2431 -3.9182 10.0947 44 1 8.1783 -1.6002 2.2225 45 1 9.5668 -0.5588 2.6199 46 1 8.1464 0.3360 0.7308 47 1 8.2631 1.4507 2.1179 48 1 3.7813 -1.3837 0.0950 49 1 3.9100 -1.4305 1.8704 50 1 1.5635 -1.7716 1.1240 51 1 1.7325 -0.2710 2.0659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113295454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:14 Heat of formation + Delta-G solvation = -77.277799 kcal Electronic energy + Delta-G solvation = -30250.662160 eV Core-core repulsion = 26183.953114 eV Total energy + Delta-G solvation = -4066.709046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67085 -40.43383 -39.47138 -38.50755 -36.05751 -35.46145 -34.58913 -33.25191 -32.16253 -31.85895 -30.25355 -28.26135 -27.20236 -25.56554 -24.94353 -24.18535 -24.06310 -22.27744 -21.09158 -20.90082 -19.89782 -19.70754 -18.35575 -17.79621 -17.28623 -16.62124 -16.48242 -16.43530 -16.31811 -16.09372 -16.02591 -15.53997 -15.48660 -15.33510 -15.28398 -14.89905 -14.56112 -14.37577 -13.98888 -13.78920 -13.51015 -13.40209 -13.33804 -13.19803 -12.97278 -12.79569 -12.53992 -12.43471 -12.40130 -12.34354 -12.27896 -12.16819 -12.12538 -12.07907 -11.62301 -11.46869 -11.42731 -10.68406 -10.33256 -9.98767 -9.77534 -9.27410 -9.22978 -8.44594 -5.92770 1.39050 1.43222 1.51881 1.55522 1.89401 2.07384 2.29289 2.71821 2.98344 3.22542 3.35067 3.37787 3.69455 3.75913 3.86295 3.95769 4.11656 4.13463 4.15195 4.20438 4.26125 4.34921 4.38506 4.46890 4.48470 4.51291 4.53883 4.56038 4.59893 4.68613 4.72290 4.72802 4.81050 4.85797 4.92096 4.92492 5.00571 5.04025 5.05829 5.13696 5.29371 5.42473 5.43793 5.81573 6.04638 6.11472 6.12717 6.13055 6.36099 6.62396 7.08504 7.15140 7.59042 8.13866 8.72769 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.002277 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.327302 B =12294.911287 C =13434.969007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.561 5.561 3 C 0.061 3.939 4 C -0.095 4.095 5 C -0.105 4.105 6 C 0.521 3.479 7 O -0.579 6.579 8 N -0.612 5.612 9 C 0.122 3.878 10 C 0.042 3.958 11 N -0.530 5.530 12 C 0.058 3.942 13 C 0.444 3.556 14 O -0.610 6.610 15 N -0.575 5.575 16 C -0.328 4.328 17 H 0.081 0.919 18 C -0.015 4.015 19 N -0.922 5.922 20 Si 0.991 3.009 21 H -0.271 1.271 22 H -0.274 1.274 23 H -0.272 1.272 24 C 0.047 3.953 25 C 0.117 3.883 26 C -0.100 4.100 27 C 0.060 3.940 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.034 0.966 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.395 0.605 43 H 0.276 0.724 44 H 0.037 0.963 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.077 0.923 50 H 0.087 0.913 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.562 4.985 -17.598 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.286 5.286 3 C -0.067 4.067 4 C -0.134 4.134 5 C -0.126 4.126 6 C 0.311 3.689 7 O -0.459 6.459 8 N -0.344 5.344 9 C 0.000 4.000 10 C -0.086 4.086 11 N -0.256 5.256 12 C -0.073 4.073 13 C 0.231 3.769 14 O -0.495 6.495 15 N -0.213 5.213 16 C -0.457 4.457 17 H 0.099 0.901 18 C -0.215 4.215 19 N -0.563 5.563 20 Si 0.815 3.185 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.081 4.081 25 C -0.005 4.005 26 C -0.139 4.139 27 C -0.068 4.068 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.052 0.948 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.129 0.871 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.122 0.878 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.105 0.895 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.430 5.670 -18.154 23.282 hybrid contribution 0.149 -0.834 1.437 1.668 sum -13.281 4.836 -16.716 21.891 Atomic orbital electron populations 1.22384 0.85906 1.02712 1.01217 1.61917 1.08833 1.14089 1.43802 1.22079 0.93924 0.89190 1.01518 1.21407 0.94926 0.99654 0.97384 1.21456 0.89471 0.99569 1.02113 1.21063 0.89973 0.74527 0.83354 1.90646 1.77641 1.51722 1.25916 1.48363 1.07075 1.72443 1.06569 1.21978 0.98655 0.99305 0.80092 1.22611 0.87576 0.96814 1.01621 1.61482 1.05213 1.51608 1.07260 1.21722 1.01089 0.94854 0.89608 1.20659 0.84065 0.84409 0.87751 1.90452 1.41178 1.32943 1.84972 1.41951 1.44026 1.29816 1.05478 1.19647 1.28431 1.14904 0.82761 0.90070 1.26027 0.96034 0.95405 1.03987 1.69674 1.32383 1.19084 1.35174 0.84945 0.78043 0.78522 0.76958 1.19666 1.19865 1.19688 1.22527 1.01399 0.97402 0.86800 1.21699 0.79071 0.99231 1.00515 1.21483 0.95562 0.94081 1.02723 1.22067 0.93729 0.99171 0.91802 0.90690 0.90817 0.95132 0.93864 0.89446 0.91886 0.90925 0.87645 0.90664 0.87149 0.94771 0.89790 0.91776 0.87067 0.77129 0.91423 0.94498 0.87756 0.88896 0.90401 0.92013 0.90492 0.89506 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.59 127.69 1.22 1.51 16 2 N -0.56 -8.62 4.91 -922.58 -4.53 -13.15 16 3 C 0.06 0.87 5.46 86.32 0.47 1.34 16 4 C -0.10 -1.72 5.08 30.65 0.16 -1.57 16 5 C -0.10 -1.96 1.79 -11.46 -0.02 -1.98 16 6 C 0.52 12.98 6.70 87.66 0.59 13.57 16 7 O -0.58 -18.40 15.68 -3.02 -0.05 -18.45 16 8 N -0.61 -14.69 3.00 -817.04 -2.45 -17.14 16 9 C 0.12 2.84 6.32 86.51 0.55 3.38 16 10 C 0.04 1.23 5.27 86.54 0.46 1.68 16 11 N -0.53 -16.06 4.37 -898.86 -3.93 -19.99 16 12 C 0.06 1.91 5.45 85.56 0.47 2.38 16 13 C 0.44 20.02 7.44 87.66 0.65 20.67 16 14 O -0.61 -31.39 13.91 -3.05 -0.04 -31.44 16 15 N -0.58 -28.50 5.29 -306.99 -1.62 -30.12 16 16 C -0.33 -18.04 9.68 84.04 0.81 -17.22 16 17 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 18 C -0.02 -0.79 5.50 84.93 0.47 -0.32 16 19 N -0.92 -49.03 13.05 21.66 0.28 -48.74 16 20 Si 0.99 42.06 29.55 68.60 2.03 44.09 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 C 0.05 1.12 5.62 86.38 0.49 1.60 16 25 C 0.12 2.78 6.61 86.35 0.57 3.36 16 26 C -0.10 -1.76 5.29 30.64 0.16 -1.60 16 27 C 0.06 0.88 5.46 86.32 0.47 1.35 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 30 H 0.03 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.09 1.09 8.12 -2.39 -0.02 1.07 16 33 H 0.06 1.43 7.78 -2.39 -0.02 1.41 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 1.64 6.24 -2.39 -0.01 1.62 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.11 1.97 5.50 -2.39 -0.01 1.96 16 38 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 3.02 5.77 -2.39 -0.01 3.01 16 40 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 41 H 0.11 3.21 7.97 -2.39 -0.02 3.19 16 42 H 0.40 18.74 7.90 -92.70 -0.73 18.01 16 43 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 44 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 2.12 7.99 -2.39 -0.02 2.10 16 46 H 0.09 2.24 7.04 -2.39 -0.02 2.23 16 47 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.08 1.28 7.97 -2.39 -0.02 1.26 16 50 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 51 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -68.39 395.82 -2.61 -71.00 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 0.19 Total: 35.78 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 7.51 Total: 28.16 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -12.25 Total: -129.14 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -0.09 Total: -49.88 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -68.39 -2.61 -71.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113295454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.277 kcal (2) G-P(sol) polarization free energy of solvation -68.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds