Wall clock time and date at job start Tue Mar 31 2020 21:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47156 * 2 1 4 4 C 1.46897 * 110.99979 * 66.04563 * 3 2 1 5 5 C 1.52995 * 109.46734 * 199.96341 * 4 3 2 6 6 C 1.46898 * 110.99583 * 190.00152 * 3 2 1 7 7 C 1.50699 * 109.47347 * 76.20906 * 6 3 2 8 8 O 1.21281 * 119.99801 * 356.18943 * 7 6 3 9 9 N 1.34773 * 120.00289 * 176.19888 * 7 6 3 10 10 C 1.46501 * 120.00217 * 179.97438 * 9 7 6 11 11 H 1.08995 * 115.49440 * 350.38468 * 10 9 7 12 12 C 1.53005 * 117.44079 * 204.99745 * 10 9 7 13 13 H 1.08997 * 120.23204 * 3.81134 * 12 10 9 14 14 C 1.54385 * 118.12194 * 160.68513 * 12 10 9 15 15 N 1.48555 * 104.59127 * 87.23153 * 14 12 10 16 16 C 1.46903 * 110.99701 * 200.95239 * 15 14 12 17 17 C 1.50702 * 109.47115 * 170.00006 * 16 15 14 18 18 O 1.21292 * 119.99795 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00262 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00297 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99720 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00102 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99661 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99994 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47173 * 90.00005 * 24 22 20 26 26 H 1.48495 * 109.47081 * 209.99961 * 24 22 20 27 27 H 1.48504 * 109.46829 * 329.99775 * 24 22 20 28 28 C 1.48558 * 104.22588 * 320.51132 * 15 14 12 29 29 C 1.53003 * 117.44250 * 135.77383 * 10 9 7 30 30 H 1.08995 * 120.23291 * 356.18553 * 29 10 9 31 31 H 1.09006 * 109.47048 * 299.99907 * 1 2 3 32 32 H 1.08994 * 109.47126 * 60.00115 * 1 2 3 33 33 H 1.09002 * 109.46960 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47296 * 239.99543 * 2 1 3 35 35 H 1.09008 * 109.47460 * 119.99525 * 2 1 3 36 36 H 1.09003 * 109.47409 * 319.96078 * 4 3 2 37 37 H 1.09002 * 109.47035 * 79.96222 * 4 3 2 38 38 H 1.09007 * 109.47043 * 174.69154 * 5 4 3 39 39 H 1.09002 * 109.47146 * 294.68523 * 5 4 3 40 40 H 1.08996 * 109.47863 * 54.68839 * 5 4 3 41 41 H 1.08995 * 109.47557 * 316.20129 * 6 3 2 42 42 H 1.09000 * 109.46551 * 196.20135 * 6 3 2 43 43 H 0.97010 * 119.99839 * 359.97438 * 9 7 6 44 44 H 1.08999 * 110.40513 * 206.00497 * 14 12 10 45 45 H 1.09000 * 110.41462 * 328.33174 * 14 12 10 46 46 H 1.08998 * 109.47696 * 290.00033 * 16 15 14 47 47 H 1.09002 * 109.47075 * 50.00645 * 16 15 14 48 48 H 0.97000 * 119.99778 * 0.02562 * 19 17 16 49 49 H 0.96997 * 119.99224 * 179.97438 * 23 22 20 50 50 H 1.09001 * 110.41146 * 158.25751 * 28 15 14 51 51 H 1.08995 * 110.41405 * 280.59099 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6702 2.0670 1.2533 5 6 1.7325 3.5813 1.0443 6 6 3.4685 1.4311 -0.2382 7 6 3.7453 1.1888 -1.6996 8 8 2.8326 0.9282 -2.4546 9 7 5.0071 1.2614 -2.1676 10 6 5.2763 1.0252 -3.5881 11 1 4.4373 0.6388 -4.1667 12 6 6.6775 0.5434 -3.9697 13 1 7.4136 0.3282 -3.1953 14 6 6.8643 -0.1364 -5.3432 15 7 7.1193 0.9846 -6.2840 16 6 6.8311 0.5861 -7.6682 17 6 6.8619 1.8021 -8.5579 18 8 7.1010 2.8933 -8.0853 19 7 6.6238 1.6771 -9.8785 20 6 6.6513 2.7834 -10.6878 21 1 6.8642 3.7550 -10.2670 22 6 6.4053 2.6545 -12.0493 23 7 6.4312 3.7151 -12.8248 24 14 6.0365 0.9741 -12.7768 25 1 4.5721 0.7301 -12.7418 26 1 6.5124 0.9281 -14.1827 27 1 6.7318 -0.0718 -11.9844 28 6 6.1936 2.0561 -5.8347 29 6 6.2362 1.9857 -4.2931 30 1 6.6439 2.8442 -3.7594 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 0.6614 1.7827 1.5526 37 1 2.3754 1.7784 2.0328 38 1 1.3828 4.0870 1.9445 39 1 2.7609 3.8776 0.8375 40 1 1.0983 3.8584 0.2023 41 1 3.9593 0.6612 0.3572 42 1 3.8525 2.4106 0.0467 43 1 5.7371 1.4700 -1.5637 44 1 7.7178 -0.8139 -5.3189 45 1 5.9602 -0.6750 -5.6269 46 1 7.5819 -0.1291 -8.0043 47 1 5.8441 0.1261 -7.7158 48 1 6.4323 0.8045 -10.2564 49 1 6.2599 3.6251 -13.7753 50 1 6.5421 3.0293 -6.1805 51 1 5.1842 1.8634 -6.1981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114992658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:24 Heat of formation + Delta-G solvation = -9.188628 kcal Electronic energy + Delta-G solvation = -29065.735544 eV Core-core repulsion = 25001.979066 eV Total energy + Delta-G solvation = -4063.756478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.55078 -39.63202 -38.25153 -37.60734 -35.11949 -33.94582 -32.73229 -32.12801 -31.66795 -30.68775 -28.27285 -27.88360 -26.59523 -24.53689 -23.43175 -22.51673 -21.24859 -21.02680 -20.40614 -20.25408 -19.35999 -18.20270 -17.54565 -17.07382 -16.18534 -15.98471 -15.70617 -15.23950 -15.10305 -14.96838 -14.77793 -14.75485 -14.20830 -13.87474 -13.66633 -13.44513 -13.27461 -13.03872 -12.91036 -12.64122 -12.48708 -12.36060 -12.26778 -12.02828 -11.97888 -11.87522 -11.83526 -11.42965 -11.37059 -11.29453 -11.06528 -11.02893 -10.82998 -10.58512 -10.10036 -9.99378 -9.97061 -9.55312 -8.92892 -8.71034 -8.51730 -8.20176 -8.06262 -6.30980 -3.82351 2.36182 2.59831 3.03528 3.07786 3.15943 3.52039 3.60231 3.72233 4.04075 4.11066 4.38084 4.48904 4.52487 4.63132 4.69111 4.76159 4.76881 4.78588 4.89888 4.93283 5.06569 5.10234 5.12070 5.21747 5.23759 5.32639 5.34830 5.46237 5.52239 5.61845 5.62150 5.69283 5.71143 5.72473 5.79830 5.88858 5.90656 5.95593 6.02253 6.11102 6.32904 6.55209 6.59423 6.67618 7.05941 7.14562 7.24203 7.58057 8.02337 8.14514 8.59519 8.94982 9.42102 9.82041 10.81993 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.001880 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.170776 B =14891.682472 C =15239.347111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 N -0.521 5.521 4 C 0.046 3.954 5 C -0.149 4.149 6 C 0.036 3.964 7 C 0.516 3.484 8 O -0.514 6.514 9 N -0.704 5.704 10 C 0.110 3.890 11 H 0.133 0.867 12 C -0.172 4.172 13 H 0.117 0.883 14 C 0.060 3.940 15 N -0.487 5.487 16 C 0.031 3.969 17 C 0.451 3.549 18 O -0.562 6.562 19 N -0.588 5.588 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.064 3.936 29 C -0.165 4.165 30 H 0.118 0.882 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.028 0.972 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.400 0.600 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.093 0.907 47 H 0.051 0.949 48 H 0.371 0.629 49 H 0.273 0.727 50 H 0.122 0.878 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.130 -10.164 29.357 31.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 N -0.246 5.246 4 C -0.081 4.081 5 C -0.207 4.207 6 C -0.096 4.096 7 C 0.302 3.698 8 O -0.388 6.388 9 N -0.354 5.354 10 C 0.004 3.996 11 H 0.150 0.850 12 C -0.192 4.192 13 H 0.135 0.865 14 C -0.068 4.068 15 N -0.211 5.211 16 C -0.101 4.101 17 C 0.237 3.763 18 O -0.445 6.445 19 N -0.227 5.227 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.064 4.064 29 C -0.185 4.185 30 H 0.136 0.864 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.234 0.766 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.111 0.889 47 H 0.069 0.931 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.140 0.860 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.367 -9.098 28.514 30.600 hybrid contribution -0.142 -1.889 0.099 1.897 sum -6.509 -10.987 28.613 31.333 Atomic orbital electron populations 1.21786 0.94597 1.01543 1.02494 1.22150 0.96567 0.88038 1.00808 1.61645 1.11182 1.16893 1.34927 1.22200 1.01318 0.95157 0.89417 1.21802 1.02185 0.94525 1.02185 1.21966 0.90722 1.03475 0.93391 1.20559 0.82157 0.76690 0.90393 1.90720 1.43602 1.45950 1.58479 1.45302 1.08957 1.72427 1.08750 1.21763 0.93939 1.01637 0.82280 0.84986 1.23835 0.97536 0.98676 0.99168 0.86472 1.22677 1.00482 0.93854 0.89788 1.65422 1.49619 1.05672 1.00390 1.22136 1.00613 0.97634 0.89721 1.19586 0.84092 0.89934 0.82704 1.90490 1.52597 1.27807 1.73588 1.42189 1.64004 1.09514 1.07007 1.19429 1.45676 0.89185 0.89025 0.86220 1.25045 0.97644 0.97560 0.95920 1.69624 1.48327 1.28429 1.05632 0.86673 0.79234 0.83719 0.79798 1.19622 1.20147 1.19454 1.22876 0.94469 0.99475 0.89532 1.24114 1.03585 0.93827 0.96986 0.86420 0.92882 0.91417 0.92321 0.89870 0.95353 0.90038 0.94691 0.92225 0.92933 0.91467 0.91586 0.87802 0.76563 0.89517 0.93664 0.88860 0.93057 0.79660 0.91601 0.85971 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.88 37.16 0.37 -0.74 16 2 C 0.05 0.43 5.28 -3.82 -0.02 0.41 16 3 N -0.52 -4.45 4.01 -236.07 -0.95 -5.40 16 4 C 0.05 0.29 5.55 -3.83 -0.02 0.27 16 5 C -0.15 -0.92 9.96 37.15 0.37 -0.55 16 6 C 0.04 0.26 5.30 -4.98 -0.03 0.23 16 7 C 0.52 5.43 7.56 -10.99 -0.08 5.35 16 8 O -0.51 -7.68 14.66 5.56 0.08 -7.60 16 9 N -0.70 -6.27 5.56 -53.80 -0.30 -6.57 16 10 C 0.11 1.26 5.98 -67.93 -0.41 0.85 16 11 H 0.13 1.80 7.40 -51.93 -0.38 1.42 16 12 C -0.17 -1.86 7.05 -89.23 -0.63 -2.49 16 13 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 14 C 0.06 0.74 6.29 -2.18 -0.01 0.72 16 15 N -0.49 -7.91 5.33 -231.41 -1.23 -9.14 16 16 C 0.03 0.52 5.55 -4.97 -0.03 0.50 16 17 C 0.45 10.26 7.50 -10.98 -0.08 10.18 16 18 O -0.56 -14.78 13.24 5.55 0.07 -14.71 16 19 N -0.59 -14.08 5.09 -10.96 -0.06 -14.14 16 20 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 21 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.81 13.96 55.50 0.77 -25.04 16 24 Si 0.88 19.50 27.74 -169.99 -4.71 14.78 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 28 C 0.06 1.06 5.12 -2.18 -0.01 1.05 16 29 C -0.16 -2.10 7.05 -89.24 -0.63 -2.73 16 30 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.05 0.34 6.25 -51.93 -0.32 0.01 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.86 6.63 -51.93 -0.34 0.51 16 35 H 0.03 0.20 8.12 -51.92 -0.42 -0.23 16 36 H 0.08 0.48 5.88 -51.93 -0.31 0.18 16 37 H 0.03 0.18 8.00 -51.93 -0.42 -0.23 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.05 0.31 6.91 -51.93 -0.36 -0.05 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.35 7.99 -51.93 -0.42 -0.06 16 42 H 0.10 0.58 6.57 -51.93 -0.34 0.24 16 43 H 0.40 2.31 8.83 -40.82 -0.36 1.95 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.54 7.82 -51.93 -0.41 0.13 16 46 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 48 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 49 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.12 2.45 6.05 -51.93 -0.31 2.14 16 51 H 0.04 0.71 7.99 -51.93 -0.42 0.29 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -34.60 402.96 -10.10 -44.70 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -8.39 Total: 11.71 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.46 Total: 5.33 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -1.76 Total: -60.28 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.15 Total: -22.31 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.60 -10.10 -44.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114992658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.510 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds