Wall clock time and date at job start Tue Mar 31 2020 21:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47156 * 2 1 4 4 C 1.46897 * 110.99979 * 66.04563 * 3 2 1 5 5 C 1.52995 * 109.46734 * 199.96341 * 4 3 2 6 6 C 1.46898 * 110.99583 * 190.00152 * 3 2 1 7 7 C 1.50699 * 109.47347 * 76.20906 * 6 3 2 8 8 O 1.21281 * 119.99801 * 356.18943 * 7 6 3 9 9 N 1.34773 * 120.00289 * 176.19888 * 7 6 3 10 10 C 1.46501 * 120.00217 * 179.97438 * 9 7 6 11 11 H 1.08995 * 115.49440 * 350.38468 * 10 9 7 12 12 C 1.53005 * 117.44079 * 204.99745 * 10 9 7 13 13 H 1.08997 * 120.23204 * 3.81134 * 12 10 9 14 14 C 1.54385 * 118.12194 * 160.68513 * 12 10 9 15 15 N 1.48555 * 104.59127 * 87.23153 * 14 12 10 16 16 C 1.46903 * 110.99701 * 200.95239 * 15 14 12 17 17 C 1.50702 * 109.47115 * 170.00006 * 16 15 14 18 18 O 1.21292 * 119.99795 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00262 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00297 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99720 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00102 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99661 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99994 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47173 * 90.00005 * 24 22 20 26 26 H 1.48495 * 109.47081 * 209.99961 * 24 22 20 27 27 H 1.48504 * 109.46829 * 329.99775 * 24 22 20 28 28 C 1.48558 * 104.22588 * 320.51132 * 15 14 12 29 29 C 1.53003 * 117.44250 * 135.77383 * 10 9 7 30 30 H 1.08995 * 120.23291 * 356.18553 * 29 10 9 31 31 H 1.09006 * 109.47048 * 299.99907 * 1 2 3 32 32 H 1.08994 * 109.47126 * 60.00115 * 1 2 3 33 33 H 1.09002 * 109.46960 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47296 * 239.99543 * 2 1 3 35 35 H 1.09008 * 109.47460 * 119.99525 * 2 1 3 36 36 H 1.09003 * 109.47409 * 319.96078 * 4 3 2 37 37 H 1.09002 * 109.47035 * 79.96222 * 4 3 2 38 38 H 1.09007 * 109.47043 * 174.69154 * 5 4 3 39 39 H 1.09002 * 109.47146 * 294.68523 * 5 4 3 40 40 H 1.08996 * 109.47863 * 54.68839 * 5 4 3 41 41 H 1.08995 * 109.47557 * 316.20129 * 6 3 2 42 42 H 1.09000 * 109.46551 * 196.20135 * 6 3 2 43 43 H 0.97010 * 119.99839 * 359.97438 * 9 7 6 44 44 H 1.08999 * 110.40513 * 206.00497 * 14 12 10 45 45 H 1.09000 * 110.41462 * 328.33174 * 14 12 10 46 46 H 1.08998 * 109.47696 * 290.00033 * 16 15 14 47 47 H 1.09002 * 109.47075 * 50.00645 * 16 15 14 48 48 H 0.97000 * 119.99778 * 0.02562 * 19 17 16 49 49 H 0.96997 * 119.99224 * 179.97438 * 23 22 20 50 50 H 1.09001 * 110.41146 * 158.25751 * 28 15 14 51 51 H 1.08995 * 110.41405 * 280.59099 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6702 2.0670 1.2533 5 6 1.7325 3.5813 1.0443 6 6 3.4685 1.4311 -0.2382 7 6 3.7453 1.1888 -1.6996 8 8 2.8326 0.9282 -2.4546 9 7 5.0071 1.2614 -2.1676 10 6 5.2763 1.0252 -3.5881 11 1 4.4373 0.6388 -4.1667 12 6 6.6775 0.5434 -3.9697 13 1 7.4136 0.3282 -3.1953 14 6 6.8643 -0.1364 -5.3432 15 7 7.1193 0.9846 -6.2840 16 6 6.8311 0.5861 -7.6682 17 6 6.8619 1.8021 -8.5579 18 8 7.1010 2.8933 -8.0853 19 7 6.6238 1.6771 -9.8785 20 6 6.6513 2.7834 -10.6878 21 1 6.8642 3.7550 -10.2670 22 6 6.4053 2.6545 -12.0493 23 7 6.4312 3.7151 -12.8248 24 14 6.0365 0.9741 -12.7768 25 1 4.5721 0.7301 -12.7418 26 1 6.5124 0.9281 -14.1827 27 1 6.7318 -0.0718 -11.9844 28 6 6.1936 2.0561 -5.8347 29 6 6.2362 1.9857 -4.2931 30 1 6.6439 2.8442 -3.7594 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 0.6614 1.7827 1.5526 37 1 2.3754 1.7784 2.0328 38 1 1.3828 4.0870 1.9445 39 1 2.7609 3.8776 0.8375 40 1 1.0983 3.8584 0.2023 41 1 3.9593 0.6612 0.3572 42 1 3.8525 2.4106 0.0467 43 1 5.7371 1.4700 -1.5637 44 1 7.7178 -0.8139 -5.3189 45 1 5.9602 -0.6750 -5.6269 46 1 7.5819 -0.1291 -8.0043 47 1 5.8441 0.1261 -7.7158 48 1 6.4323 0.8045 -10.2564 49 1 6.2599 3.6251 -13.7753 50 1 6.5421 3.0293 -6.1805 51 1 5.1842 1.8634 -6.1981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114992658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:23 Heat of formation + Delta-G solvation = -38.204572 kcal Electronic energy + Delta-G solvation = -29066.993770 eV Core-core repulsion = 25001.979066 eV Total energy + Delta-G solvation = -4065.014704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.55895 -40.68870 -39.80105 -38.36167 -36.39259 -35.77823 -33.88386 -33.64965 -32.67587 -31.30083 -29.40159 -29.25714 -27.40626 -26.27727 -23.99520 -23.67998 -22.08866 -21.93840 -21.41908 -21.23889 -21.06253 -20.13020 -18.31145 -17.97979 -17.62606 -16.86468 -16.81335 -16.59054 -16.34541 -16.09016 -15.79950 -15.59051 -15.32727 -15.00661 -14.89241 -14.74902 -14.43186 -14.35666 -14.08322 -13.81411 -13.61401 -13.32822 -13.19000 -13.11106 -12.98174 -12.83820 -12.54444 -12.50518 -12.46182 -12.39200 -12.36605 -12.01271 -11.97448 -11.82232 -11.56202 -11.50923 -11.10143 -10.85675 -10.32355 -10.24951 -9.79019 -9.41734 -9.25142 -8.42975 -6.03769 1.28798 1.33982 1.43005 1.56211 1.83494 1.91486 2.21433 2.58144 2.75423 2.96115 3.12845 3.18729 3.60112 3.67947 3.75667 3.83589 4.01076 4.05245 4.12799 4.19211 4.23832 4.28207 4.31208 4.34319 4.42587 4.48185 4.54990 4.56224 4.58123 4.63533 4.70987 4.81257 4.84312 4.95665 4.98552 5.11436 5.12875 5.15152 5.23035 5.33118 5.40759 5.47084 5.51310 5.77787 5.87186 6.00222 6.01088 6.15679 6.56520 6.57142 6.86169 7.27945 7.36579 7.93386 8.74533 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.001880 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.170776 B =14891.682472 C =15239.347111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 N -0.548 5.548 4 C 0.048 3.952 5 C -0.148 4.148 6 C 0.042 3.958 7 C 0.512 3.488 8 O -0.566 6.566 9 N -0.688 5.688 10 C 0.117 3.883 11 H 0.107 0.893 12 C -0.143 4.143 13 H 0.150 0.850 14 C 0.057 3.943 15 N -0.503 5.503 16 C 0.041 3.959 17 C 0.448 3.552 18 O -0.605 6.605 19 N -0.590 5.590 20 C -0.327 4.327 21 H 0.056 0.944 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.273 1.273 27 H -0.230 1.230 28 C 0.065 3.935 29 C -0.179 4.179 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.419 0.581 44 H 0.113 0.887 45 H 0.053 0.947 46 H 0.126 0.874 47 H 0.077 0.923 48 H 0.389 0.611 49 H 0.279 0.721 50 H 0.077 0.923 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 -13.996 32.008 35.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 N -0.273 5.273 4 C -0.078 4.078 5 C -0.205 4.205 6 C -0.089 4.089 7 C 0.300 3.700 8 O -0.443 6.443 9 N -0.340 5.340 10 C 0.009 3.991 11 H 0.125 0.875 12 C -0.162 4.162 13 H 0.168 0.832 14 C -0.070 4.070 15 N -0.228 5.228 16 C -0.090 4.090 17 C 0.236 3.764 18 O -0.490 6.490 19 N -0.231 5.231 20 C -0.457 4.457 21 H 0.074 0.926 22 C -0.214 4.214 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.184 1.184 26 H -0.198 1.198 27 H -0.153 1.153 28 C -0.063 4.063 29 C -0.199 4.199 30 H 0.144 0.856 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.142 0.858 43 H 0.257 0.743 44 H 0.131 0.869 45 H 0.071 0.929 46 H 0.144 0.856 47 H 0.094 0.906 48 H 0.225 0.775 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.738 -12.940 31.224 34.283 hybrid contribution -0.320 -0.548 -0.652 0.909 sum -6.057 -13.488 30.572 33.960 Atomic orbital electron populations 1.21759 0.94494 1.01985 1.01874 1.22075 0.96701 0.88166 1.00373 1.61575 1.12143 1.17135 1.36488 1.22226 1.01956 0.94740 0.88908 1.21794 1.01948 0.94825 1.01966 1.22009 0.90510 1.05438 0.90967 1.21280 0.81734 0.75388 0.91612 1.90706 1.45198 1.48384 1.60018 1.45162 1.09370 1.71614 1.07859 1.21462 0.93524 1.00770 0.83324 0.87496 1.23955 0.97255 0.95880 0.99157 0.83197 1.22832 1.02019 0.92860 0.89280 1.65418 1.49625 1.07142 1.00626 1.22099 1.03153 0.94703 0.89064 1.20821 0.81474 0.91374 0.82748 1.90499 1.53606 1.30411 1.74436 1.42017 1.64908 1.09020 1.07192 1.18994 1.47729 0.88563 0.90367 0.92594 1.26122 0.96431 1.03250 0.95631 1.69805 1.49358 1.31885 1.06322 0.85375 0.79828 0.77543 0.78861 1.18373 1.19829 1.15349 1.22597 0.93277 0.97831 0.92606 1.23921 1.05921 0.95704 0.94387 0.85617 0.91529 0.93912 0.91392 0.92398 0.93452 0.89862 0.92779 0.90738 0.92578 0.93734 0.88785 0.85811 0.74291 0.86880 0.92882 0.85569 0.90559 0.77508 0.91124 0.90483 0.95932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.88 71.98 0.71 -1.39 16 2 C 0.05 0.84 5.28 86.30 0.46 1.30 16 3 N -0.55 -8.58 4.01 -900.79 -3.62 -12.19 16 4 C 0.05 0.51 5.55 86.30 0.48 0.99 16 5 C -0.15 -1.59 9.96 71.98 0.72 -0.88 16 6 C 0.04 0.50 5.30 85.56 0.45 0.96 16 7 C 0.51 10.20 7.56 87.66 0.66 10.86 16 8 O -0.57 -17.24 14.66 -3.03 -0.04 -17.28 16 9 N -0.69 -10.86 5.56 -442.53 -2.46 -13.32 16 10 C 0.12 2.51 5.98 44.99 0.27 2.78 16 11 H 0.11 2.93 7.40 -2.39 -0.02 2.92 16 12 C -0.14 -2.64 7.05 -9.89 -0.07 -2.71 16 13 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 14 C 0.06 1.22 6.29 86.45 0.54 1.76 16 15 N -0.50 -15.70 5.33 -886.05 -4.73 -20.43 16 16 C 0.04 1.33 5.55 85.56 0.47 1.80 16 17 C 0.45 20.78 7.50 87.66 0.66 21.44 16 18 O -0.61 -33.80 13.24 -3.07 -0.04 -33.84 16 19 N -0.59 -28.49 5.09 -306.98 -1.56 -30.05 16 20 C -0.33 -19.50 10.16 84.04 0.85 -18.65 16 21 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 22 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 23 N -0.93 -57.03 13.96 21.66 0.30 -56.73 16 24 Si 0.96 39.52 27.74 68.60 1.90 41.42 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 28 C 0.06 2.23 5.12 86.45 0.44 2.68 16 29 C -0.18 -4.44 7.05 -9.90 -0.07 -4.51 16 30 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.07 0.77 6.25 -2.38 -0.01 0.75 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.19 6.63 -2.39 -0.02 1.18 16 35 H 0.05 0.54 8.12 -2.38 -0.02 0.52 16 36 H 0.08 0.83 5.88 -2.39 -0.01 0.81 16 37 H 0.05 0.38 8.00 -2.39 -0.02 0.36 16 38 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 39 H 0.06 0.55 6.91 -2.39 -0.02 0.53 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 0.64 7.99 -2.39 -0.02 0.63 16 42 H 0.12 1.00 6.57 -2.39 -0.02 0.98 16 43 H 0.42 3.44 8.83 -92.70 -0.82 2.62 16 44 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.05 1.08 7.82 -2.39 -0.02 1.06 16 46 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 47 H 0.08 2.12 7.88 -2.39 -0.02 2.10 16 48 H 0.39 15.62 5.76 -92.71 -0.53 15.08 16 49 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 50 H 0.08 3.35 6.05 -2.39 -0.01 3.34 16 51 H 0.02 0.83 7.99 -2.39 -0.02 0.81 16 Total: -1.00 -84.71 402.96 -3.66 -88.37 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.46 Total: 38.04 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 7.05 Total: 16.01 kcal Atomic # 7 Polarization: -120.66 SS G_CDS: -12.06 Total: -132.72 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.09 Total: -51.12 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.90 Total: 41.42 kcal Total: -84.71 -3.66 -88.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114992658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.167 kcal (2) G-P(sol) polarization free energy of solvation -84.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds