Wall clock time and date at job start Tue Mar 31 2020 21:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47391 * 2 1 4 4 C 1.46899 * 111.00355 * 293.95790 * 3 2 1 5 5 C 1.46901 * 111.00538 * 170.00175 * 3 2 1 6 6 C 1.52995 * 109.47683 * 190.00444 * 5 3 2 7 7 C 1.50698 * 109.47320 * 179.97438 * 6 5 3 8 8 O 1.21277 * 119.99944 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99976 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00017 * 179.97438 * 9 7 6 11 11 H 1.09002 * 115.51464 * 9.42222 * 10 9 7 12 12 C 1.52999 * 117.44544 * 223.99980 * 10 9 7 13 13 H 1.08999 * 119.52780 * 4.13758 * 12 10 9 14 14 C 1.54377 * 118.12648 * 160.73121 * 12 10 9 15 15 N 1.48563 * 104.59920 * 87.23046 * 14 12 10 16 16 C 1.46891 * 111.00249 * 200.95980 * 15 14 12 17 17 C 1.50695 * 109.47244 * 189.99866 * 16 15 14 18 18 O 1.21296 * 120.00309 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00230 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00178 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99469 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99942 * 179.97438 * 20 19 17 23 23 N 1.31402 * 120.00036 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99622 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47663 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47075 * 120.00273 * 24 22 20 27 27 H 1.48501 * 109.47235 * 240.00103 * 24 22 20 28 28 C 1.51832 * 104.41540 * 320.24562 * 15 14 12 29 29 C 1.53002 * 117.44339 * 154.83888 * 10 9 7 30 30 H 1.09001 * 119.52495 * 355.87427 * 29 10 9 31 31 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46844 * 299.99513 * 1 2 3 33 33 H 1.08999 * 109.47345 * 59.99764 * 1 2 3 34 34 H 1.09008 * 109.46951 * 240.00529 * 2 1 3 35 35 H 1.09003 * 109.47547 * 120.00693 * 2 1 3 36 36 H 1.09000 * 109.47244 * 296.04561 * 4 3 2 37 37 H 1.09004 * 109.46801 * 56.04726 * 4 3 2 38 38 H 1.09003 * 109.47240 * 176.03970 * 4 3 2 39 39 H 1.09005 * 109.47012 * 69.99853 * 5 3 2 40 40 H 1.09006 * 109.46439 * 310.00574 * 5 3 2 41 41 H 1.08998 * 109.47124 * 59.99935 * 6 5 3 42 42 H 1.08999 * 109.46937 * 300.00174 * 6 5 3 43 43 H 0.97002 * 120.00198 * 0.02562 * 9 7 6 44 44 H 1.09001 * 110.41153 * 206.00927 * 14 12 10 45 45 H 1.08997 * 110.41183 * 328.44827 * 14 12 10 46 46 H 1.09002 * 109.46906 * 309.99907 * 16 15 14 47 47 H 1.09001 * 109.47342 * 69.99484 * 16 15 14 48 48 H 0.96997 * 120.00189 * 359.97438 * 19 17 16 49 49 H 0.97005 * 120.00008 * 179.97438 * 23 22 20 50 50 H 1.09003 * 111.93122 * 281.05239 * 28 15 14 51 51 H 1.08998 * 110.44807 * 157.53028 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0670 -1.2532 5 6 3.4685 1.4311 0.2381 6 6 3.9000 2.8790 0.4792 7 6 5.3862 2.9263 0.7240 8 8 6.0362 1.9026 0.7078 9 7 5.9929 4.1061 0.9610 10 6 7.4376 4.1520 1.1996 11 1 7.9742 3.2218 1.0124 12 6 7.9354 5.0348 2.3458 13 1 7.2134 5.5419 2.9858 14 6 9.3474 4.7677 2.9097 15 7 10.2525 5.5733 2.0501 16 6 11.6301 5.0678 2.1171 17 6 12.5566 6.0433 1.4380 18 8 12.1129 7.0594 0.9462 19 7 13.8782 5.7861 1.3763 20 6 14.7212 6.6738 0.7589 21 1 14.3261 7.5789 0.3218 22 6 16.0837 6.4090 0.6958 23 7 16.5644 5.3079 1.2281 24 14 17.2321 7.6181 -0.1460 25 1 16.4482 8.7702 -0.6592 26 1 18.2421 8.1023 0.8291 27 1 17.9191 6.9434 -1.2765 28 6 9.6888 5.4095 0.6499 29 6 8.1635 5.4609 0.8823 30 1 7.6115 6.2857 0.4317 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.1769 1.5791 -2.0859 37 1 0.5919 2.0180 -1.4050 38 1 1.9824 3.1099 -1.1986 39 1 3.9925 1.0359 -0.6322 40 1 3.7122 0.8288 1.1134 41 1 3.3760 3.2742 1.3494 42 1 3.6562 3.4813 -0.3961 43 1 5.4729 4.9249 0.9743 44 1 9.4121 5.0998 3.9459 45 1 9.5933 3.7086 2.8331 46 1 11.9247 4.9529 3.1602 47 1 11.6877 4.1022 1.6148 48 1 14.2331 4.9734 1.7692 49 1 17.5156 5.1229 1.1837 50 1 9.9737 4.4558 0.2053 51 1 10.0045 6.2360 0.0132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115074345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:28 Heat of formation + Delta-G solvation = -24.710169 kcal Electronic energy + Delta-G solvation = -28301.796811 eV Core-core repulsion = 24237.367269 eV Total energy + Delta-G solvation = -4064.429542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.50620 -39.43002 -38.17117 -37.82465 -35.09584 -33.85453 -33.04308 -32.33211 -31.16641 -29.86891 -28.33122 -27.65466 -27.00933 -24.76797 -23.68389 -22.22411 -21.26807 -21.08304 -20.41763 -20.20351 -19.08367 -17.82303 -17.58988 -17.05085 -16.42372 -15.94202 -15.79219 -15.44053 -15.23301 -14.79170 -14.68758 -14.49424 -14.22828 -13.99029 -13.69281 -13.51927 -13.39560 -13.25222 -12.83629 -12.61764 -12.50721 -12.33862 -12.26628 -12.07318 -11.90665 -11.77767 -11.49909 -11.43220 -11.34883 -11.31199 -11.25503 -11.05115 -10.77544 -10.32640 -10.21102 -10.20431 -10.06681 -9.47948 -8.97640 -8.83812 -8.49457 -8.01450 -7.92312 -6.39001 -3.79610 2.26289 2.61539 3.18054 3.28372 3.35569 3.48137 3.58582 3.93131 4.01718 4.25069 4.35509 4.43942 4.53614 4.58380 4.63521 4.67094 4.74765 4.80046 4.96641 5.00635 5.04104 5.05416 5.09257 5.21546 5.26385 5.28008 5.33758 5.44350 5.46050 5.53388 5.54195 5.55262 5.60933 5.71863 5.76783 5.80299 5.85424 5.98939 6.03015 6.25106 6.30256 6.37298 6.54704 6.56086 6.96020 7.14776 7.18517 7.57918 7.89456 8.09416 8.65173 9.21331 9.57957 10.10056 10.78983 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.001482 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.130427 B =18892.046974 C =19008.534288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.015 3.985 5 C 0.070 3.930 6 C -0.136 4.136 7 C 0.519 3.481 8 O -0.538 6.538 9 N -0.700 5.700 10 C 0.102 3.898 11 H 0.133 0.867 12 C -0.166 4.166 13 H 0.118 0.882 14 C 0.060 3.940 15 N -0.480 5.480 16 C 0.031 3.969 17 C 0.447 3.553 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.066 3.934 29 C -0.162 4.162 30 H 0.118 0.882 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.403 0.597 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.090 0.910 47 H 0.052 0.948 48 H 0.392 0.608 49 H 0.270 0.730 50 H 0.049 0.951 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.881 -8.816 -0.355 31.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.270 5.270 4 C -0.133 4.133 5 C -0.059 4.059 6 C -0.176 4.176 7 C 0.305 3.695 8 O -0.414 6.414 9 N -0.349 5.349 10 C -0.004 4.004 11 H 0.151 0.849 12 C -0.187 4.187 13 H 0.136 0.864 14 C -0.068 4.068 15 N -0.204 5.204 16 C -0.101 4.101 17 C 0.232 3.768 18 O -0.460 6.460 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.061 4.061 29 C -0.182 4.182 30 H 0.136 0.864 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.237 0.763 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.070 0.930 48 H 0.225 0.775 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -29.718 -8.137 -0.143 30.812 hybrid contribution 1.090 -0.690 -0.969 1.614 sum -28.628 -8.827 -1.112 29.979 Atomic orbital electron populations 1.21807 0.94710 1.01657 1.02488 1.22089 0.96149 0.88493 1.01083 1.62002 1.13728 1.16308 1.34925 1.22518 1.01651 0.99333 0.89768 1.21818 0.86658 0.95291 1.02096 1.21625 0.91697 0.99588 1.04738 1.20653 0.90030 0.83104 0.75693 1.90726 1.66822 1.33409 1.50480 1.45322 1.07685 1.09636 1.72253 1.21837 0.81072 0.96627 1.00888 0.84921 1.23888 0.98635 1.04529 0.91632 0.86390 1.22634 0.89603 0.96137 0.98462 1.66308 1.00256 1.48788 1.05095 1.22065 0.89693 0.96568 1.01757 1.19682 0.83039 0.88483 0.85632 1.90508 1.76054 1.28517 1.50948 1.41867 1.05156 1.22244 1.51079 1.19745 0.87839 1.02971 1.32137 0.87890 1.25246 0.97568 0.97307 0.97852 1.69619 1.14600 1.24842 1.45347 0.85813 0.79753 0.80141 0.78706 1.19234 1.20781 1.20818 1.23255 0.89444 1.01814 0.91569 1.23894 0.96951 0.98069 0.99328 0.86448 0.92232 0.91781 0.92662 0.94773 0.90591 0.95479 0.91000 0.91170 0.93788 0.89820 0.87815 0.88722 0.76250 0.89362 0.93639 0.89226 0.93032 0.77531 0.91975 0.93304 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.84 37.16 0.37 -0.36 16 2 C 0.05 0.30 5.68 -3.83 -0.02 0.28 16 3 N -0.55 -3.69 4.76 -242.91 -1.16 -4.84 16 4 C 0.02 0.08 9.13 60.06 0.55 0.63 16 5 C 0.07 0.54 4.25 -3.83 -0.02 0.52 16 6 C -0.14 -0.88 5.62 -27.89 -0.16 -1.03 16 7 C 0.52 5.05 7.83 -10.99 -0.09 4.97 16 8 O -0.54 -7.53 15.55 5.56 0.09 -7.44 16 9 N -0.70 -5.98 5.56 -53.81 -0.30 -6.28 16 10 C 0.10 1.12 5.97 -67.93 -0.41 0.72 16 11 H 0.13 1.73 7.40 -51.93 -0.38 1.35 16 12 C -0.17 -1.86 7.05 -89.31 -0.63 -2.49 16 13 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 14 C 0.06 0.78 6.27 -2.18 -0.01 0.77 16 15 N -0.48 -8.07 5.02 -228.44 -1.15 -9.22 16 16 C 0.03 0.56 5.32 -4.98 -0.03 0.54 16 17 C 0.45 10.65 7.63 -10.99 -0.08 10.56 16 18 O -0.58 -15.68 14.84 5.54 0.08 -15.60 16 19 N -0.57 -14.49 5.29 -10.96 -0.06 -14.55 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 24 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.07 1.04 5.90 -0.30 0.00 1.03 16 29 C -0.16 -1.95 6.95 -89.31 -0.62 -2.57 16 30 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.25 6.47 -51.93 -0.34 -0.08 16 34 H 0.03 0.21 8.12 -51.92 -0.42 -0.21 16 35 H 0.08 0.46 7.93 -51.93 -0.41 0.05 16 36 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.07 0.34 6.30 -51.93 -0.33 0.01 16 38 H 0.07 0.33 6.47 -51.93 -0.34 -0.01 16 39 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.08 0.72 7.89 -51.93 -0.41 0.31 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.46 6.55 -51.93 -0.34 0.12 16 43 H 0.40 2.28 8.83 -40.82 -0.36 1.92 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.57 8.00 -51.93 -0.42 0.15 16 46 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 47 H 0.05 0.86 7.84 -51.93 -0.41 0.45 16 48 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 49 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 50 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 51 H 0.10 1.89 7.31 -51.93 -0.38 1.51 16 LS Contribution 411.08 15.07 6.19 6.19 Total: -1.00 -33.73 411.08 -10.56 -44.28 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -8.57 Total: 9.74 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.39 Total: 5.57 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -1.94 Total: -58.92 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.17 Total: -23.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.73 -10.56 -44.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115074345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.573 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds