Wall clock time and date at job start Tue Mar 31 2020 21:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47391 * 2 1 4 4 C 1.46899 * 111.00355 * 293.95790 * 3 2 1 5 5 C 1.46901 * 111.00538 * 170.00175 * 3 2 1 6 6 C 1.52995 * 109.47683 * 190.00444 * 5 3 2 7 7 C 1.50698 * 109.47320 * 179.97438 * 6 5 3 8 8 O 1.21277 * 119.99944 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99976 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00017 * 179.97438 * 9 7 6 11 11 H 1.09002 * 115.51464 * 9.42222 * 10 9 7 12 12 C 1.52999 * 117.44544 * 223.99980 * 10 9 7 13 13 H 1.08999 * 119.52780 * 4.13758 * 12 10 9 14 14 C 1.54377 * 118.12648 * 160.73121 * 12 10 9 15 15 N 1.48563 * 104.59920 * 87.23046 * 14 12 10 16 16 C 1.46891 * 111.00249 * 200.95980 * 15 14 12 17 17 C 1.50695 * 109.47244 * 189.99866 * 16 15 14 18 18 O 1.21296 * 120.00309 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00230 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00178 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99469 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99942 * 179.97438 * 20 19 17 23 23 N 1.31402 * 120.00036 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99622 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47663 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47075 * 120.00273 * 24 22 20 27 27 H 1.48501 * 109.47235 * 240.00103 * 24 22 20 28 28 C 1.51832 * 104.41540 * 320.24562 * 15 14 12 29 29 C 1.53002 * 117.44339 * 154.83888 * 10 9 7 30 30 H 1.09001 * 119.52495 * 355.87427 * 29 10 9 31 31 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46844 * 299.99513 * 1 2 3 33 33 H 1.08999 * 109.47345 * 59.99764 * 1 2 3 34 34 H 1.09008 * 109.46951 * 240.00529 * 2 1 3 35 35 H 1.09003 * 109.47547 * 120.00693 * 2 1 3 36 36 H 1.09000 * 109.47244 * 296.04561 * 4 3 2 37 37 H 1.09004 * 109.46801 * 56.04726 * 4 3 2 38 38 H 1.09003 * 109.47240 * 176.03970 * 4 3 2 39 39 H 1.09005 * 109.47012 * 69.99853 * 5 3 2 40 40 H 1.09006 * 109.46439 * 310.00574 * 5 3 2 41 41 H 1.08998 * 109.47124 * 59.99935 * 6 5 3 42 42 H 1.08999 * 109.46937 * 300.00174 * 6 5 3 43 43 H 0.97002 * 120.00198 * 0.02562 * 9 7 6 44 44 H 1.09001 * 110.41153 * 206.00927 * 14 12 10 45 45 H 1.08997 * 110.41183 * 328.44827 * 14 12 10 46 46 H 1.09002 * 109.46906 * 309.99907 * 16 15 14 47 47 H 1.09001 * 109.47342 * 69.99484 * 16 15 14 48 48 H 0.96997 * 120.00189 * 359.97438 * 19 17 16 49 49 H 0.97005 * 120.00008 * 179.97438 * 23 22 20 50 50 H 1.09003 * 111.93122 * 281.05239 * 28 15 14 51 51 H 1.08998 * 110.44807 * 157.53028 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0670 -1.2532 5 6 3.4685 1.4311 0.2381 6 6 3.9000 2.8790 0.4792 7 6 5.3862 2.9263 0.7240 8 8 6.0362 1.9026 0.7078 9 7 5.9929 4.1061 0.9610 10 6 7.4376 4.1520 1.1996 11 1 7.9742 3.2218 1.0124 12 6 7.9354 5.0348 2.3458 13 1 7.2134 5.5419 2.9858 14 6 9.3474 4.7677 2.9097 15 7 10.2525 5.5733 2.0501 16 6 11.6301 5.0678 2.1171 17 6 12.5566 6.0433 1.4380 18 8 12.1129 7.0594 0.9462 19 7 13.8782 5.7861 1.3763 20 6 14.7212 6.6738 0.7589 21 1 14.3261 7.5789 0.3218 22 6 16.0837 6.4090 0.6958 23 7 16.5644 5.3079 1.2281 24 14 17.2321 7.6181 -0.1460 25 1 16.4482 8.7702 -0.6592 26 1 18.2421 8.1023 0.8291 27 1 17.9191 6.9434 -1.2765 28 6 9.6888 5.4095 0.6499 29 6 8.1635 5.4609 0.8823 30 1 7.6115 6.2857 0.4317 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.1769 1.5791 -2.0859 37 1 0.5919 2.0180 -1.4050 38 1 1.9824 3.1099 -1.1986 39 1 3.9925 1.0359 -0.6322 40 1 3.7122 0.8288 1.1134 41 1 3.3760 3.2742 1.3494 42 1 3.6562 3.4813 -0.3961 43 1 5.4729 4.9249 0.9743 44 1 9.4121 5.0998 3.9459 45 1 9.5933 3.7086 2.8331 46 1 11.9247 4.9529 3.1602 47 1 11.6877 4.1022 1.6148 48 1 14.2331 4.9734 1.7692 49 1 17.5156 5.1229 1.1837 50 1 9.9737 4.4558 0.2053 51 1 10.0045 6.2360 0.0132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115074345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:27 Heat of formation + Delta-G solvation = -51.467085 kcal Electronic energy + Delta-G solvation = -28302.957078 eV Core-core repulsion = 24237.367269 eV Total energy + Delta-G solvation = -4065.589809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.44159 -40.49849 -39.66574 -38.62896 -36.31529 -35.75162 -33.91570 -33.28218 -33.01536 -30.39989 -29.44884 -29.00302 -27.63026 -26.53332 -24.54206 -23.27478 -22.03768 -21.82451 -21.29596 -21.14988 -20.88016 -19.85522 -18.30736 -17.99724 -17.61809 -17.00970 -16.66294 -16.48104 -16.34691 -16.13384 -16.04913 -15.60582 -15.22050 -15.11229 -14.84781 -14.76996 -14.47291 -14.12465 -13.94045 -13.69384 -13.54802 -13.32902 -13.13936 -13.10223 -12.93983 -12.81198 -12.68938 -12.52999 -12.41578 -12.39047 -12.27269 -12.11340 -11.89479 -11.86415 -11.75532 -11.49199 -11.13930 -10.97147 -10.32525 -10.00615 -9.82507 -9.40609 -9.36864 -8.46339 -5.94990 1.36486 1.41453 1.49651 1.55827 1.85747 2.05765 2.28558 2.65324 2.78212 2.96631 3.20341 3.37019 3.55762 3.67298 3.74842 3.84477 3.91447 4.08154 4.10634 4.14561 4.25358 4.28249 4.30798 4.39613 4.48925 4.52429 4.54817 4.56445 4.61748 4.62369 4.63973 4.79154 4.89641 4.90814 4.93978 5.01411 5.04014 5.10973 5.12744 5.13865 5.37296 5.41249 5.43989 5.69950 5.84841 6.02188 6.06647 6.07924 6.47772 6.61050 7.13500 7.18820 7.56856 8.12832 8.71475 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.001482 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.130427 B =18892.046974 C =19008.534288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.546 5.546 4 C 0.013 3.987 5 C 0.072 3.928 6 C -0.123 4.123 7 C 0.517 3.483 8 O -0.586 6.586 9 N -0.685 5.685 10 C 0.112 3.888 11 H 0.112 0.888 12 C -0.153 4.153 13 H 0.143 0.857 14 C 0.058 3.942 15 N -0.502 5.502 16 C 0.043 3.957 17 C 0.443 3.557 18 O -0.614 6.614 19 N -0.576 5.576 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.063 3.937 29 C -0.163 4.163 30 H 0.133 0.867 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.020 0.980 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.421 0.579 44 H 0.102 0.898 45 H 0.052 0.948 46 H 0.111 0.889 47 H 0.068 0.932 48 H 0.395 0.605 49 H 0.277 0.723 50 H 0.046 0.954 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.671 -8.509 0.197 32.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.271 5.271 4 C -0.135 4.135 5 C -0.056 4.056 6 C -0.163 4.163 7 C 0.306 3.694 8 O -0.465 6.465 9 N -0.336 5.336 10 C 0.005 3.995 11 H 0.129 0.871 12 C -0.173 4.173 13 H 0.161 0.839 14 C -0.070 4.070 15 N -0.227 5.227 16 C -0.088 4.088 17 C 0.231 3.769 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.064 4.064 29 C -0.183 4.183 30 H 0.151 0.849 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.039 0.961 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.259 0.741 44 H 0.120 0.880 45 H 0.070 0.930 46 H 0.129 0.871 47 H 0.086 0.914 48 H 0.229 0.771 49 H 0.087 0.913 50 H 0.064 0.936 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -31.540 -7.825 0.425 32.499 hybrid contribution 1.611 -0.816 -1.145 2.138 sum -29.929 -8.642 -0.721 31.160 Atomic orbital electron populations 1.21762 0.93529 1.02266 1.02519 1.22157 0.97105 0.88313 1.00695 1.62059 1.12746 1.16623 1.35647 1.22600 1.02223 0.99770 0.88906 1.21727 0.87250 0.95997 1.00659 1.21584 0.89091 0.99041 1.06579 1.21243 0.91187 0.82483 0.74509 1.90715 1.68051 1.35129 1.52642 1.45191 1.06633 1.10309 1.71443 1.21536 0.82254 0.95144 1.00602 0.87067 1.23952 0.98095 1.03998 0.91241 0.83906 1.22723 0.89788 0.96025 0.98444 1.66259 1.00029 1.50233 1.06166 1.21911 0.89524 0.95165 1.02238 1.20702 0.83024 0.88758 0.84461 1.90477 1.76688 1.30519 1.52331 1.41937 1.05797 1.22148 1.51453 1.19701 0.89093 1.03291 1.34060 0.90317 1.26029 0.98350 0.98939 0.97941 1.69680 1.15311 1.25783 1.45510 0.84871 0.77615 0.77809 0.78036 1.19749 1.19583 1.19661 1.23126 0.92261 1.00179 0.90858 1.23743 0.94703 0.99347 1.00513 0.84871 0.91411 0.92018 0.92247 0.95293 0.90957 0.96135 0.90085 0.89897 0.95732 0.91251 0.85678 0.86472 0.74120 0.87967 0.93025 0.87077 0.91437 0.77103 0.91350 0.93599 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.84 71.98 0.71 -0.49 16 2 C 0.05 0.52 5.68 86.30 0.49 1.01 16 3 N -0.55 -6.66 4.76 -922.44 -4.39 -11.06 16 4 C 0.01 0.12 9.13 127.69 1.17 1.28 16 5 C 0.07 1.06 4.25 86.30 0.37 1.43 16 6 C -0.12 -1.30 5.62 29.85 0.17 -1.13 16 7 C 0.52 9.30 7.83 87.66 0.69 9.98 16 8 O -0.59 -16.35 15.55 -3.02 -0.05 -16.39 16 9 N -0.69 -10.08 5.56 -442.54 -2.46 -12.55 16 10 C 0.11 2.29 5.97 44.99 0.27 2.55 16 11 H 0.11 2.86 7.40 -2.39 -0.02 2.84 16 12 C -0.15 -3.03 7.05 -9.94 -0.07 -3.10 16 13 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 14 C 0.06 1.39 6.27 86.45 0.54 1.93 16 15 N -0.50 -16.59 5.02 -876.65 -4.40 -20.99 16 16 C 0.04 1.56 5.32 85.56 0.46 2.02 16 17 C 0.44 21.66 7.63 87.66 0.67 22.32 16 18 O -0.61 -34.63 14.84 -3.08 -0.05 -34.67 16 19 N -0.58 -30.20 5.29 -306.98 -1.62 -31.82 16 20 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 24 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 28 C 0.06 2.00 5.90 85.79 0.51 2.50 16 29 C -0.16 -3.69 6.95 -9.94 -0.07 -3.76 16 30 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.45 6.47 -2.39 -0.02 0.43 16 34 H 0.03 0.36 8.12 -2.38 -0.02 0.34 16 35 H 0.07 0.87 7.93 -2.39 -0.02 0.85 16 36 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.08 0.60 6.30 -2.38 -0.02 0.59 16 38 H 0.08 0.54 6.47 -2.39 -0.02 0.52 16 39 H 0.02 0.45 8.08 -2.38 -0.02 0.43 16 40 H 0.07 1.21 7.89 -2.38 -0.02 1.19 16 41 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.12 0.76 6.55 -2.39 -0.02 0.74 16 43 H 0.42 3.29 8.83 -92.71 -0.82 2.47 16 44 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.05 1.20 8.00 -2.39 -0.02 1.18 16 46 H 0.11 3.50 8.08 -2.39 -0.02 3.48 16 47 H 0.07 2.21 7.84 -2.39 -0.02 2.19 16 48 H 0.40 19.74 7.90 -92.71 -0.73 19.00 16 49 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 50 H 0.05 1.44 7.88 -2.39 -0.02 1.42 16 51 H 0.07 2.66 7.31 -2.39 -0.02 2.64 16 Total: -1.00 -75.24 411.08 -4.10 -79.35 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.61 Total: 34.83 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 7.17 Total: 17.96 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -12.60 Total: -126.58 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.09 Total: -51.07 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -75.24 -4.10 -79.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115074345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.879 kcal (2) G-P(sol) polarization free energy of solvation -75.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds