Wall clock time and date at job start Tue Mar 31 2020 22:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 110.99826 * 2 1 4 4 C 1.53055 * 109.36109 * 176.80945 * 3 2 1 5 5 N 1.46957 * 109.36182 * 58.40273 * 4 3 2 6 6 C 1.46901 * 110.99825 * 176.80901 * 5 4 3 7 7 C 1.46961 * 110.90198 * 300.68921 * 5 4 3 8 8 H 1.09005 * 109.46598 * 299.33539 * 7 5 4 9 9 C 1.53002 * 109.50944 * 179.26852 * 7 5 4 10 10 N 1.46495 * 109.47074 * 305.77701 * 9 7 5 11 11 C 1.34776 * 119.99834 * 184.99000 * 10 9 7 12 12 O 1.21342 * 120.00206 * 0.02562 * 11 10 9 13 13 C 1.49452 * 119.99636 * 179.97438 * 11 10 9 14 14 O 1.21354 * 120.00594 * 354.85742 * 13 11 10 15 15 N 1.34776 * 119.99918 * 174.85497 * 13 11 10 16 16 C 1.46498 * 120.00306 * 184.93670 * 15 13 11 17 17 C 1.53002 * 109.47130 * 184.94420 * 16 15 13 18 18 C 1.50696 * 115.55148 * 279.67018 * 17 16 15 19 19 H 1.07998 * 119.99829 * 95.52398 * 18 17 16 20 20 C 1.37880 * 120.00213 * 275.53210 * 18 17 16 21 21 N 1.31518 * 119.99690 * 5.41161 * 20 18 17 22 22 Si 1.86800 * 120.00192 * 185.41295 * 20 18 17 23 23 H 1.48505 * 109.46924 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47294 * 119.99350 * 22 20 18 25 25 H 1.48500 * 109.47227 * 239.99808 * 22 20 18 26 26 C 1.53004 * 117.49635 * 133.96529 * 17 16 15 27 27 C 1.52998 * 59.99913 * 252.50805 * 26 17 16 28 28 C 1.46957 * 110.99825 * 236.20057 * 2 1 3 29 29 H 1.08998 * 109.47004 * 183.79502 * 1 2 3 30 30 H 1.08999 * 109.47540 * 303.79880 * 1 2 3 31 31 H 1.09005 * 109.47317 * 63.80179 * 1 2 3 32 32 H 1.09001 * 109.49017 * 296.77221 * 3 2 1 33 33 H 1.08998 * 109.48904 * 56.82347 * 3 2 1 34 34 H 1.08999 * 109.48568 * 178.36341 * 4 3 2 35 35 H 1.08996 * 109.49306 * 298.43383 * 4 3 2 36 36 H 1.09007 * 109.47210 * 60.88827 * 6 5 4 37 37 H 1.08999 * 109.47292 * 180.88515 * 6 5 4 38 38 H 1.09003 * 109.47268 * 300.88513 * 6 5 4 39 39 H 1.09000 * 109.46808 * 65.77488 * 9 7 5 40 40 H 1.08995 * 109.46619 * 185.77402 * 9 7 5 41 41 H 0.97002 * 120.00124 * 4.98993 * 10 9 7 42 42 H 0.97000 * 120.00130 * 4.93524 * 15 13 11 43 43 H 1.08999 * 109.46960 * 304.94012 * 16 15 13 44 44 H 1.08999 * 109.47347 * 64.94185 * 16 15 13 45 45 H 0.97000 * 119.99526 * 185.00333 * 21 20 18 46 46 H 1.08991 * 117.50228 * 359.97438 * 26 17 16 47 47 H 1.09002 * 117.49769 * 145.02053 * 26 17 16 48 48 H 1.09002 * 117.50070 * 252.51357 * 27 26 17 49 49 H 1.08999 * 117.49862 * 107.49203 * 27 26 17 50 50 H 1.08998 * 109.49115 * 303.15372 * 28 2 1 51 51 H 1.09002 * 109.48959 * 63.20013 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3290 0.0804 5 7 4.0500 0.5658 -1.0597 6 6 5.5191 0.5658 -1.0597 7 6 3.5234 -0.8062 -1.0603 8 1 3.8256 -1.3117 -0.1431 9 6 4.0765 -1.5653 -2.2682 10 7 3.7876 -0.8132 -3.4917 11 6 4.0934 -1.3395 -4.6942 12 8 4.6076 -2.4364 -4.7634 13 6 3.7981 -0.5725 -5.9424 14 8 3.1993 0.4812 -5.8799 15 7 4.1968 -1.0510 -7.1376 16 6 4.0040 -0.2497 -8.3488 17 6 4.4253 -1.0657 -9.5726 18 6 5.9071 -1.1147 -9.8424 19 1 6.4950 -1.9447 -9.4793 20 6 6.5124 -0.0997 -10.5528 21 7 5.8194 0.9619 -10.9027 22 14 8.3167 -0.2325 -11.0180 23 1 8.8660 -1.5149 -10.5092 24 1 8.4513 -0.1876 -12.4961 25 1 9.0672 0.8997 -10.4180 26 6 3.4865 -1.0632 -10.7807 27 6 3.6049 -2.3132 -9.9065 28 6 1.9956 -0.7632 -1.1401 29 1 -0.3633 -1.0254 0.0680 30 1 -0.3634 0.5716 0.8540 31 1 -0.3634 0.4537 -0.9221 32 1 1.6938 1.8774 -0.9174 33 1 1.6010 1.9130 0.8600 34 1 3.9178 2.3448 0.0512 35 1 3.8254 0.8479 1.0106 36 1 5.8824 0.0978 -0.1447 37 1 5.8824 0.0074 -1.9224 38 1 5.8824 1.5922 -1.1120 39 1 5.1548 -1.6834 -2.1603 40 1 3.6074 -2.5474 -2.3259 41 1 3.3762 0.0635 -3.4364 42 1 4.6115 -1.9260 -7.1959 43 1 2.9530 0.0247 -8.4394 44 1 4.6114 0.6533 -8.2876 45 1 6.2241 1.6418 -11.4638 46 1 2.5686 -0.4806 -10.7035 47 1 3.9406 -1.0968 -11.7710 48 1 4.1369 -3.1692 -10.3217 49 1 2.7650 -2.5527 -9.2543 50 1 1.6013 -1.7790 -1.1110 51 1 1.6934 -0.2823 -2.0704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117318696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:48 Heat of formation + Delta-G solvation = -26.328856 kcal Electronic energy + Delta-G solvation = -30093.134162 eV Core-core repulsion = 26028.634428 eV Total energy + Delta-G solvation = -4064.499734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52571 -39.68695 -38.11619 -36.72299 -36.17060 -34.76926 -33.31328 -31.97149 -31.51776 -29.64055 -27.56446 -26.57551 -25.66751 -25.36458 -23.67886 -23.20828 -21.86194 -21.22218 -20.03689 -19.68828 -19.46742 -18.09199 -16.70784 -16.37266 -16.28065 -16.07744 -15.52488 -15.36245 -15.08888 -15.02011 -14.69341 -14.66116 -14.48338 -14.21376 -14.09267 -13.65415 -13.32772 -12.96638 -12.85134 -12.65088 -12.51901 -12.45694 -12.15346 -11.82892 -11.78504 -11.66363 -11.58798 -11.27404 -11.17723 -11.05879 -10.97669 -10.90826 -10.51964 -10.28575 -9.68621 -9.24277 -9.18110 -8.99191 -8.81392 -8.65987 -8.50549 -8.34014 -8.24136 -6.09928 -4.17830 1.82729 2.71902 3.26035 3.35167 3.38824 3.46639 3.49902 3.64346 4.12901 4.33944 4.36783 4.44720 4.61927 4.82417 4.87243 4.95259 4.96726 5.09884 5.13443 5.19153 5.19363 5.26165 5.30324 5.33032 5.35621 5.42137 5.51518 5.52335 5.58076 5.67518 5.73359 5.96700 6.26666 6.31060 6.38749 6.51131 6.52210 6.54025 6.66311 6.70655 6.73121 6.75541 7.02195 7.05622 7.31991 7.38645 7.45423 7.81611 7.90530 8.17517 8.32539 8.54376 8.85094 9.49784 10.98675 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.002396 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.807610 B =11685.665359 C =12274.559502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.053 3.947 4 C 0.059 3.941 5 N -0.540 5.540 6 C 0.020 3.980 7 C 0.074 3.926 8 H 0.068 0.932 9 C 0.124 3.876 10 N -0.694 5.694 11 C 0.506 3.494 12 O -0.525 6.525 13 C 0.495 3.505 14 O -0.537 6.537 15 N -0.672 5.672 16 C 0.159 3.841 17 C 0.025 3.975 18 C -0.498 4.498 19 H 0.062 0.938 20 C 0.072 3.928 21 N -0.875 5.875 22 Si 0.890 3.110 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 C -0.146 4.146 27 C -0.208 4.208 28 C 0.058 3.942 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.419 0.581 42 H 0.411 0.589 43 H 0.047 0.953 44 H 0.078 0.922 45 H 0.261 0.739 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.083 0.917 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 -1.052 22.853 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.075 4.075 4 C -0.069 4.069 5 N -0.266 5.266 6 C -0.128 4.128 7 C -0.035 4.035 8 H 0.086 0.914 9 C 0.000 4.000 10 N -0.350 5.350 11 C 0.287 3.713 12 O -0.401 6.401 13 C 0.275 3.725 14 O -0.416 6.416 15 N -0.322 5.322 16 C 0.037 3.963 17 C 0.024 3.976 18 C -0.536 4.536 19 H 0.080 0.920 20 C -0.132 4.132 21 N -0.511 5.511 22 Si 0.717 3.283 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.184 4.184 27 C -0.246 4.246 28 C -0.070 4.070 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.257 0.743 42 H 0.247 0.753 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.085 0.915 50 H 0.101 0.899 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.320 -0.858 22.785 23.947 hybrid contribution 0.988 0.089 -0.360 1.055 sum -6.332 -0.770 22.425 23.314 Atomic orbital electron populations 1.22353 0.86841 1.02400 1.00778 1.62167 1.08131 1.13964 1.42723 1.22217 0.94501 0.89406 1.01426 1.22159 0.94368 0.98661 0.91727 1.62085 1.08444 1.12923 1.43127 1.22455 0.86520 1.02809 1.00996 1.21976 0.94741 0.89417 0.97328 0.91396 1.21473 1.01054 0.95056 0.82456 1.45653 1.62293 1.22825 1.04229 1.20504 0.79178 0.86319 0.85275 1.90740 1.41797 1.20267 1.87324 1.19952 0.81524 0.86082 0.84982 1.90723 1.40878 1.23060 1.86922 1.45988 1.58027 1.22085 1.06134 1.21301 0.98887 0.94426 0.81654 1.19051 0.93250 0.93696 0.91579 1.20464 0.90368 1.06547 1.36211 0.91957 1.24984 0.97899 0.94552 0.95741 1.70018 1.37191 1.08722 1.35219 0.86576 0.85327 0.78170 0.78213 1.19639 1.20931 1.21010 1.22521 0.99961 0.98989 0.96916 1.22990 1.02887 0.93250 1.05447 1.22235 0.93342 0.99030 0.92425 0.91239 0.91298 0.95238 0.93533 0.90187 0.89898 0.93866 0.95369 0.90633 0.90972 0.90768 0.90149 0.74307 0.75327 0.93438 0.90332 0.92909 0.91602 0.89722 0.90115 0.91527 0.89891 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.60 60.07 0.58 0.74 16 2 N -0.55 -4.45 4.97 -242.75 -1.21 -5.66 16 3 C 0.05 0.40 5.62 -3.77 -0.02 0.38 16 4 C 0.06 0.45 5.62 -3.76 -0.02 0.42 16 5 N -0.54 -4.75 4.12 -234.72 -0.97 -5.72 16 6 C 0.02 0.17 9.22 60.07 0.55 0.72 16 7 C 0.07 0.63 2.23 -67.65 -0.15 0.48 16 8 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 9 C 0.12 1.24 4.63 -4.04 -0.02 1.23 16 10 N -0.69 -8.86 5.06 -60.74 -0.31 -9.17 16 11 C 0.51 8.22 7.89 -11.58 -0.09 8.13 16 12 O -0.53 -9.42 16.48 5.50 0.09 -9.33 16 13 C 0.50 9.35 7.88 -11.58 -0.09 9.26 16 14 O -0.54 -11.12 16.47 5.49 0.09 -11.03 16 15 N -0.67 -13.43 5.51 -60.73 -0.33 -13.77 16 16 C 0.16 3.60 5.59 -4.04 -0.02 3.58 16 17 C 0.03 0.59 1.33 -155.66 -0.21 0.38 16 18 C -0.50 -13.02 8.82 -34.44 -0.30 -13.33 16 19 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 20 C 0.07 1.92 5.40 -17.82 -0.10 1.82 16 21 N -0.88 -24.16 12.93 55.43 0.72 -23.45 16 22 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.15 -3.29 9.40 -26.73 -0.25 -3.55 16 27 C -0.21 -4.34 9.91 -26.73 -0.27 -4.60 16 28 C 0.06 0.50 4.80 -3.77 -0.02 0.48 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.07 0.71 6.22 -51.93 -0.32 0.39 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.75 6.64 -51.93 -0.34 0.41 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.42 5.44 6.91 -40.82 -0.28 5.16 16 42 H 0.41 8.01 7.96 -40.82 -0.32 7.68 16 43 H 0.05 1.06 7.90 -51.93 -0.41 0.65 16 44 H 0.08 2.00 8.12 -51.93 -0.42 1.58 16 45 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 46 H 0.07 1.41 8.08 -51.93 -0.42 0.99 16 47 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 48 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 49 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.05 0.50 7.31 -51.93 -0.38 0.12 16 LS Contribution 411.72 15.07 6.20 6.20 Total: -1.00 -29.38 411.72 -9.95 -39.34 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -8.79 Total: 10.70 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.43 Total: 6.16 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -2.10 Total: -57.76 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: 0.18 Total: -20.35 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.38 -9.95 -39.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117318696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.006 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds