Wall clock time and date at job start Tue Mar 31 2020 22:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 110.99826 * 2 1 4 4 C 1.53055 * 109.36109 * 176.80945 * 3 2 1 5 5 N 1.46957 * 109.36182 * 58.40273 * 4 3 2 6 6 C 1.46901 * 110.99825 * 176.80901 * 5 4 3 7 7 C 1.46961 * 110.90198 * 300.68921 * 5 4 3 8 8 H 1.09005 * 109.46598 * 299.33539 * 7 5 4 9 9 C 1.53002 * 109.50944 * 179.26852 * 7 5 4 10 10 N 1.46495 * 109.47074 * 305.77701 * 9 7 5 11 11 C 1.34776 * 119.99834 * 184.99000 * 10 9 7 12 12 O 1.21342 * 120.00206 * 0.02562 * 11 10 9 13 13 C 1.49452 * 119.99636 * 179.97438 * 11 10 9 14 14 O 1.21354 * 120.00594 * 354.85742 * 13 11 10 15 15 N 1.34776 * 119.99918 * 174.85497 * 13 11 10 16 16 C 1.46498 * 120.00306 * 184.93670 * 15 13 11 17 17 C 1.53002 * 109.47130 * 184.94420 * 16 15 13 18 18 C 1.50696 * 115.55148 * 279.67018 * 17 16 15 19 19 H 1.07998 * 119.99829 * 95.52398 * 18 17 16 20 20 C 1.37880 * 120.00213 * 275.53210 * 18 17 16 21 21 N 1.31518 * 119.99690 * 5.41161 * 20 18 17 22 22 Si 1.86800 * 120.00192 * 185.41295 * 20 18 17 23 23 H 1.48505 * 109.46924 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47294 * 119.99350 * 22 20 18 25 25 H 1.48500 * 109.47227 * 239.99808 * 22 20 18 26 26 C 1.53004 * 117.49635 * 133.96529 * 17 16 15 27 27 C 1.52998 * 59.99913 * 252.50805 * 26 17 16 28 28 C 1.46957 * 110.99825 * 236.20057 * 2 1 3 29 29 H 1.08998 * 109.47004 * 183.79502 * 1 2 3 30 30 H 1.08999 * 109.47540 * 303.79880 * 1 2 3 31 31 H 1.09005 * 109.47317 * 63.80179 * 1 2 3 32 32 H 1.09001 * 109.49017 * 296.77221 * 3 2 1 33 33 H 1.08998 * 109.48904 * 56.82347 * 3 2 1 34 34 H 1.08999 * 109.48568 * 178.36341 * 4 3 2 35 35 H 1.08996 * 109.49306 * 298.43383 * 4 3 2 36 36 H 1.09007 * 109.47210 * 60.88827 * 6 5 4 37 37 H 1.08999 * 109.47292 * 180.88515 * 6 5 4 38 38 H 1.09003 * 109.47268 * 300.88513 * 6 5 4 39 39 H 1.09000 * 109.46808 * 65.77488 * 9 7 5 40 40 H 1.08995 * 109.46619 * 185.77402 * 9 7 5 41 41 H 0.97002 * 120.00124 * 4.98993 * 10 9 7 42 42 H 0.97000 * 120.00130 * 4.93524 * 15 13 11 43 43 H 1.08999 * 109.46960 * 304.94012 * 16 15 13 44 44 H 1.08999 * 109.47347 * 64.94185 * 16 15 13 45 45 H 0.97000 * 119.99526 * 185.00333 * 21 20 18 46 46 H 1.08991 * 117.50228 * 359.97438 * 26 17 16 47 47 H 1.09002 * 117.49769 * 145.02053 * 26 17 16 48 48 H 1.09002 * 117.50070 * 252.51357 * 27 26 17 49 49 H 1.08999 * 117.49862 * 107.49203 * 27 26 17 50 50 H 1.08998 * 109.49115 * 303.15372 * 28 2 1 51 51 H 1.09002 * 109.48959 * 63.20013 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3290 0.0804 5 7 4.0500 0.5658 -1.0597 6 6 5.5191 0.5658 -1.0597 7 6 3.5234 -0.8062 -1.0603 8 1 3.8256 -1.3117 -0.1431 9 6 4.0765 -1.5653 -2.2682 10 7 3.7876 -0.8132 -3.4917 11 6 4.0934 -1.3395 -4.6942 12 8 4.6076 -2.4364 -4.7634 13 6 3.7981 -0.5725 -5.9424 14 8 3.1993 0.4812 -5.8799 15 7 4.1968 -1.0510 -7.1376 16 6 4.0040 -0.2497 -8.3488 17 6 4.4253 -1.0657 -9.5726 18 6 5.9071 -1.1147 -9.8424 19 1 6.4950 -1.9447 -9.4793 20 6 6.5124 -0.0997 -10.5528 21 7 5.8194 0.9619 -10.9027 22 14 8.3167 -0.2325 -11.0180 23 1 8.8660 -1.5149 -10.5092 24 1 8.4513 -0.1876 -12.4961 25 1 9.0672 0.8997 -10.4180 26 6 3.4865 -1.0632 -10.7807 27 6 3.6049 -2.3132 -9.9065 28 6 1.9956 -0.7632 -1.1401 29 1 -0.3633 -1.0254 0.0680 30 1 -0.3634 0.5716 0.8540 31 1 -0.3634 0.4537 -0.9221 32 1 1.6938 1.8774 -0.9174 33 1 1.6010 1.9130 0.8600 34 1 3.9178 2.3448 0.0512 35 1 3.8254 0.8479 1.0106 36 1 5.8824 0.0978 -0.1447 37 1 5.8824 0.0074 -1.9224 38 1 5.8824 1.5922 -1.1120 39 1 5.1548 -1.6834 -2.1603 40 1 3.6074 -2.5474 -2.3259 41 1 3.3762 0.0635 -3.4364 42 1 4.6115 -1.9260 -7.1959 43 1 2.9530 0.0247 -8.4394 44 1 4.6114 0.6533 -8.2876 45 1 6.2241 1.6418 -11.4638 46 1 2.5686 -0.4806 -10.7035 47 1 3.9406 -1.0968 -11.7710 48 1 4.1369 -3.1692 -10.3217 49 1 2.7650 -2.5527 -9.2543 50 1 1.6013 -1.7790 -1.1110 51 1 1.6934 -0.2823 -2.0704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117318696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:47 Heat of formation + Delta-G solvation = -48.695060 kcal Electronic energy + Delta-G solvation = -30094.104034 eV Core-core repulsion = 26028.634428 eV Total energy + Delta-G solvation = -4065.469605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.73522 -40.64433 -39.53490 -38.47844 -36.94005 -35.78570 -34.88159 -33.96476 -32.36644 -30.25741 -28.95659 -27.88766 -27.20980 -26.27166 -24.68281 -24.17181 -22.99159 -22.60911 -21.38964 -21.24071 -20.49145 -19.59426 -18.05360 -17.87332 -17.29744 -17.06370 -16.73363 -16.55629 -16.48064 -16.17576 -15.81477 -15.72403 -15.48435 -15.45579 -15.08255 -14.95396 -14.75988 -14.38130 -13.96975 -13.62518 -13.45546 -13.42500 -13.19368 -13.14706 -13.00747 -12.82544 -12.80785 -12.74796 -12.42958 -12.35727 -12.31369 -12.04659 -11.80647 -11.65323 -11.52120 -10.87269 -10.75577 -10.48054 -10.27345 -10.06507 -10.04023 -9.47094 -9.30713 -8.12597 -6.25075 0.40409 1.39043 1.41078 1.44527 1.54130 2.19972 2.42557 2.65787 2.88172 2.90843 3.16581 3.44422 3.60470 3.63482 3.76474 3.98535 4.18849 4.19724 4.22029 4.35489 4.45080 4.52555 4.52575 4.56703 4.59548 4.60370 4.61817 4.69988 4.71496 4.74194 4.85722 4.91009 4.95513 5.00044 5.01115 5.02920 5.06109 5.18418 5.25511 5.35464 5.56700 5.63420 5.76571 5.88792 5.90300 6.00895 6.08821 6.10750 6.35412 6.47004 6.78381 6.84027 7.02310 7.44876 8.95808 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.002396 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.807610 B =11685.665359 C =12274.559502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.053 3.947 4 C 0.061 3.939 5 N -0.555 5.555 6 C 0.023 3.977 7 C 0.084 3.916 8 H 0.079 0.921 9 C 0.123 3.877 10 N -0.676 5.676 11 C 0.514 3.486 12 O -0.542 6.542 13 C 0.495 3.505 14 O -0.557 6.557 15 N -0.673 5.673 16 C 0.177 3.823 17 C 0.000 4.000 18 C -0.508 4.508 19 H 0.057 0.943 20 C 0.027 3.973 21 N -0.904 5.904 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.286 1.286 26 C -0.152 4.152 27 C -0.178 4.178 28 C 0.059 3.941 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.021 0.979 32 H 0.031 0.969 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.419 0.581 42 H 0.414 0.586 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.261 0.739 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 -1.951 24.674 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.273 5.273 3 C -0.075 4.075 4 C -0.066 4.066 5 N -0.281 5.281 6 C -0.125 4.125 7 C -0.025 4.025 8 H 0.097 0.903 9 C 0.000 4.000 10 N -0.329 5.329 11 C 0.294 3.706 12 O -0.420 6.420 13 C 0.276 3.724 14 O -0.437 6.437 15 N -0.323 5.323 16 C 0.054 3.946 17 C 0.000 4.000 18 C -0.546 4.546 19 H 0.075 0.925 20 C -0.174 4.174 21 N -0.541 5.541 22 Si 0.773 3.227 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.212 1.212 26 C -0.190 4.190 27 C -0.215 4.215 28 C -0.069 4.069 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.257 0.743 42 H 0.251 0.749 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.107 0.893 50 H 0.109 0.891 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.417 -1.765 24.647 25.799 hybrid contribution 0.970 0.397 -0.844 1.346 sum -6.447 -1.368 23.803 24.698 Atomic orbital electron populations 1.22400 0.86111 1.02975 1.00896 1.62217 1.08856 1.14114 1.42151 1.22253 0.94674 0.89225 1.01360 1.22175 0.94211 0.98918 0.91326 1.62088 1.08796 1.13129 1.44074 1.22411 0.86272 1.02884 1.00929 1.21886 0.94573 0.89346 0.96739 0.90292 1.21689 1.01537 0.95269 0.81528 1.45636 1.60523 1.22681 1.04068 1.19919 0.79663 0.85858 0.85177 1.90740 1.43113 1.20771 1.87389 1.20445 0.80544 0.85878 0.85580 1.90709 1.41599 1.24023 1.87329 1.45864 1.58500 1.21994 1.05943 1.20851 0.97951 0.93271 0.82567 1.19065 0.92544 0.96118 0.92304 1.20731 0.91878 1.06144 1.35801 0.92452 1.25652 1.01354 0.94389 0.96016 1.70115 1.38666 1.09341 1.36020 0.85676 0.81096 0.78013 0.77890 1.19120 1.20574 1.21222 1.22464 0.99977 1.00687 0.95842 1.22979 1.02380 0.92171 1.04010 1.22218 0.93431 0.99393 0.91894 0.90629 0.90107 0.96035 0.95022 0.88664 0.89152 0.93460 0.94209 0.91968 0.90747 0.90373 0.89372 0.74257 0.74920 0.93374 0.93925 0.93038 0.90650 0.91564 0.89590 0.89252 0.89110 0.95066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.60 127.69 1.23 1.52 16 2 N -0.55 -8.03 4.97 -921.93 -4.58 -12.61 16 3 C 0.05 0.73 5.62 86.31 0.49 1.21 16 4 C 0.06 0.82 5.62 86.31 0.49 1.30 16 5 N -0.56 -8.93 4.12 -896.51 -3.69 -12.63 16 6 C 0.02 0.34 9.22 127.69 1.18 1.52 16 7 C 0.08 1.27 2.23 44.92 0.10 1.37 16 8 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 9 C 0.12 2.27 4.63 86.38 0.40 2.67 16 10 N -0.68 -16.58 5.06 -464.43 -2.35 -18.93 16 11 C 0.51 16.29 7.89 87.27 0.69 16.98 16 12 O -0.54 -18.86 16.48 -3.22 -0.05 -18.92 16 13 C 0.49 18.61 7.88 87.27 0.69 19.29 16 14 O -0.56 -23.13 16.47 -3.26 -0.05 -23.18 16 15 N -0.67 -26.83 5.51 -464.41 -2.56 -29.39 16 16 C 0.18 8.08 5.59 86.38 0.48 8.56 16 17 C 0.00 0.02 1.33 -52.93 -0.07 -0.05 16 18 C -0.51 -26.63 8.82 25.60 0.23 -26.41 16 19 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 20 C 0.03 1.43 5.40 84.65 0.46 1.89 16 21 N -0.90 -50.70 12.93 21.45 0.28 -50.43 16 22 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 26 C -0.15 -6.81 9.40 30.60 0.29 -6.52 16 27 C -0.18 -7.15 9.91 30.59 0.30 -6.85 16 28 C 0.06 0.93 4.80 86.31 0.41 1.35 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.02 0.29 8.14 -2.38 -0.02 0.27 16 32 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 1.01 8.13 -2.39 -0.02 0.99 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.06 1.10 6.22 -2.39 -0.01 1.09 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.45 6.64 -2.39 -0.02 1.43 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.42 10.61 6.91 -92.71 -0.64 9.96 16 42 H 0.41 15.96 7.96 -92.71 -0.74 15.22 16 43 H 0.05 2.16 7.90 -2.39 -0.02 2.14 16 44 H 0.04 2.24 8.12 -2.39 -0.02 2.22 16 45 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 46 H 0.08 3.19 8.08 -2.39 -0.02 3.17 16 47 H 0.07 3.19 8.14 -2.39 -0.02 3.18 16 48 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 49 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 50 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.03 0.61 7.31 -2.39 -0.02 0.59 16 Total: -1.00 -62.17 411.72 -4.08 -66.25 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: -0.45 Total: 37.18 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 7.35 Total: 17.85 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -12.90 Total: -123.98 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -0.11 Total: -42.10 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -62.17 -4.08 -66.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117318696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.559 kcal (2) G-P(sol) polarization free energy of solvation -62.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds