Wall clock time and date at job start Tue Mar 31 2020 21:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47049 * 2 1 4 4 C 1.36735 * 127.13638 * 91.29780 * 3 2 1 5 5 C 1.50703 * 126.34778 * 0.02562 * 4 3 2 6 6 C 1.52998 * 109.47633 * 89.99850 * 5 4 3 7 7 C 1.50695 * 109.47427 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99927 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99936 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99361 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 119.99831 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47270 * 90.00002 * 11 9 7 13 13 H 1.48503 * 109.46839 * 209.99767 * 11 9 7 14 14 H 1.48500 * 109.47431 * 329.99756 * 11 9 7 15 15 N 1.30292 * 107.30546 * 180.25822 * 4 3 2 16 16 N 1.28521 * 110.05335 * 359.56165 * 15 4 3 17 17 C 1.31216 * 109.86211 * 0.44904 * 16 15 4 18 18 N 1.38577 * 126.47939 * 179.73120 * 17 16 15 19 19 C 1.46843 * 111.00052 * 63.27562 * 18 17 16 20 20 C 1.53040 * 109.52550 * 174.16441 * 19 18 17 21 21 C 1.53119 * 109.27762 * 59.18337 * 20 19 18 22 22 C 1.52995 * 109.52143 * 182.44134 * 21 20 19 23 23 O 1.42898 * 109.47390 * 299.68260 * 22 21 20 24 24 C 1.52995 * 109.52258 * 62.25062 * 21 20 19 25 25 O 1.42895 * 109.47216 * 60.31793 * 24 21 20 26 26 C 1.53121 * 109.15593 * 302.34526 * 21 20 19 27 27 C 1.46853 * 110.99864 * 299.07309 * 18 17 16 28 28 H 1.08996 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47174 * 300.00323 * 1 2 3 30 30 H 1.09003 * 109.46934 * 59.99880 * 1 2 3 31 31 H 1.09003 * 109.46851 * 240.00075 * 2 1 3 32 32 H 1.09003 * 109.46934 * 120.00120 * 2 1 3 33 33 H 1.09007 * 109.46650 * 329.99759 * 5 4 3 34 34 H 1.09002 * 109.47141 * 210.00274 * 5 4 3 35 35 H 1.08996 * 109.46785 * 59.99875 * 6 5 4 36 36 H 1.09003 * 109.46749 * 300.00664 * 6 5 4 37 37 H 0.97011 * 119.99110 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.46849 * 294.18488 * 19 18 17 39 39 H 1.09007 * 109.46261 * 54.14518 * 19 18 17 40 40 H 1.09002 * 109.50052 * 299.23569 * 20 19 18 41 41 H 1.09005 * 109.53387 * 179.14048 * 20 19 18 42 42 H 1.09009 * 109.47588 * 59.68097 * 22 21 20 43 43 H 1.09001 * 109.47619 * 179.67857 * 22 21 20 44 44 H 0.96698 * 114.00403 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.47034 * 180.31483 * 24 21 20 46 46 H 1.08994 * 109.47337 * 300.31573 * 24 21 20 47 47 H 0.96703 * 114.00024 * 179.97438 * 25 24 21 48 48 H 1.09001 * 109.50410 * 297.71303 * 26 21 20 49 49 H 1.09005 * 109.52939 * 177.62263 * 26 21 20 50 50 H 1.09004 * 109.45855 * 305.84969 * 27 18 17 51 51 H 1.08992 * 109.46542 * 65.81727 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3168 2.1513 1.0898 5 6 2.2053 1.7363 2.5342 6 6 3.5273 1.1156 2.9901 7 6 3.4157 0.7001 4.4343 8 1 2.4938 0.8620 4.9731 9 6 4.4901 0.1121 5.0676 10 7 4.3923 -0.2510 6.3278 11 14 6.0843 -0.1687 4.1355 12 1 6.9624 1.0192 4.2875 13 1 6.7725 -1.3661 4.6814 14 1 5.7855 -0.3825 2.6967 15 7 2.7106 3.3121 0.6480 16 7 2.6902 3.3246 -0.6370 17 6 2.2698 2.1661 -1.0875 18 7 2.1111 1.8074 -2.4166 19 6 3.3984 1.8220 -3.1230 20 6 3.2089 1.2831 -4.5427 21 6 2.1898 2.1543 -5.2824 22 6 1.9506 1.5846 -6.6820 23 8 3.1799 1.5788 -7.4105 24 6 2.7249 3.5831 -5.3950 25 8 3.9536 3.5755 -6.1246 26 6 0.8732 2.1610 -4.5006 27 6 1.1304 2.6745 -3.0822 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.4044 1.0047 2.6413 34 1 1.9836 2.6099 3.1472 35 1 4.3282 1.8472 2.8830 36 1 3.7490 0.2420 2.3771 37 1 5.1484 -0.6643 6.7734 38 1 3.7756 2.8437 -3.1696 39 1 4.1128 1.1955 -2.5889 40 1 2.8450 0.2566 -4.4967 41 1 4.1614 1.3081 -5.0722 42 1 1.5721 0.5657 -6.5999 43 1 1.2208 2.2020 -7.2058 44 1 3.1030 1.2299 -8.3091 45 1 1.9964 4.2038 -5.9167 46 1 2.8974 3.9863 -4.3972 47 1 4.3507 4.4503 -6.2353 48 1 0.4725 1.1484 -4.4540 49 1 0.1565 2.8133 -4.9996 50 1 0.1974 2.6671 -2.5185 51 1 1.5181 3.6921 -3.1291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121759337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:21 Heat of formation + Delta-G solvation = -22.375590 kcal Electronic energy + Delta-G solvation = -30975.668142 eV Core-core repulsion = 26911.339835 eV Total energy + Delta-G solvation = -4064.328307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.72720 -40.28108 -37.24605 -36.19403 -35.58493 -34.44054 -33.66794 -31.84571 -31.23591 -30.40334 -29.15435 -27.14646 -26.18540 -25.42840 -23.97529 -23.54855 -22.76895 -21.46117 -20.67076 -19.96773 -18.65181 -17.86147 -17.34931 -17.08593 -16.83918 -16.34038 -16.03529 -15.72672 -15.24532 -14.90785 -14.47572 -14.22515 -14.11904 -13.76421 -13.65064 -13.44007 -13.34044 -13.26721 -13.02109 -12.68353 -12.55014 -12.48767 -12.32268 -12.26843 -11.61379 -11.50559 -11.39058 -11.19948 -11.11016 -10.86999 -10.83530 -10.73320 -10.42869 -10.39330 -10.12879 -10.08016 -9.93970 -9.87382 -9.85030 -9.31122 -8.78195 -8.59974 -8.55407 -6.11070 -4.10524 1.98710 2.42518 3.15283 3.28824 3.36086 3.39590 3.63505 3.79148 3.97435 4.31777 4.40297 4.61218 4.68888 4.75686 4.80662 4.85471 4.90183 4.97127 5.01662 5.08910 5.12070 5.13831 5.20522 5.21713 5.24064 5.32851 5.34284 5.40606 5.53115 5.57317 5.59647 5.65370 5.66191 5.74436 5.81401 5.96967 6.01534 6.10676 6.19543 6.26625 6.32701 6.50948 6.62057 6.84496 7.12079 7.25181 7.40227 7.43622 7.52227 7.67910 8.43075 8.92073 9.06015 9.50748 11.01766 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.002682 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.301441 B =10436.011034 C =10896.888262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.462 5.462 4 C 0.211 3.789 5 C -0.023 4.023 6 C -0.004 4.004 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.071 3.929 10 N -0.899 5.899 11 Si 0.878 3.122 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.268 1.268 15 N -0.297 5.297 16 N -0.314 5.314 17 C 0.322 3.678 18 N -0.459 5.459 19 C 0.065 3.935 20 C -0.094 4.094 21 C -0.058 4.058 22 C 0.092 3.908 23 O -0.546 6.546 24 C 0.084 3.916 25 O -0.546 6.546 26 C -0.104 4.104 27 C 0.068 3.932 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.021 0.979 36 H 0.013 0.987 37 H 0.264 0.736 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.368 0.632 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.369 0.631 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.328 1.722 -28.448 29.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.155 5.155 4 C -0.056 4.056 5 C -0.063 4.063 6 C -0.042 4.042 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.705 3.295 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.193 1.193 15 N -0.137 5.137 16 N -0.158 5.158 17 C -0.035 4.035 18 N -0.185 5.185 19 C -0.062 4.062 20 C -0.131 4.131 21 C -0.058 4.058 22 C 0.014 3.986 23 O -0.349 6.349 24 C 0.006 3.994 25 O -0.349 6.349 26 C -0.142 4.142 27 C -0.059 4.059 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.039 0.961 36 H 0.031 0.969 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.213 0.787 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.214 0.786 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.826 2.168 -27.768 29.218 hybrid contribution 0.505 -0.458 -0.827 1.072 sum -8.321 1.710 -28.596 29.831 Atomic orbital electron populations 1.22086 0.94005 1.03139 1.02838 1.21857 0.95651 0.79001 1.05209 1.46434 1.49308 1.13786 1.05949 1.25632 0.99322 0.88026 0.92601 1.20242 1.01602 1.01858 0.82565 1.19544 0.91827 0.95421 0.97446 1.21002 1.01080 1.40023 0.93974 0.90582 1.24961 0.98553 0.94856 0.94678 1.69903 1.31644 1.41676 1.10503 0.86816 0.84080 0.78061 0.80555 1.20046 1.21263 1.19307 1.74050 1.19608 1.17920 1.02160 1.74478 1.19066 1.17879 1.04413 1.22131 1.04803 0.88608 0.87917 1.58561 1.11396 1.52667 0.95859 1.22211 0.88414 1.01436 0.94151 1.21510 1.00296 0.98471 0.92862 1.20685 0.95781 0.95176 0.94164 1.22041 0.86447 0.98541 0.91580 1.86728 1.31449 1.87407 1.29294 1.22193 0.86607 0.95482 0.95110 1.86678 1.37739 1.33377 1.77141 1.21598 0.95751 1.03064 0.93789 1.22102 0.95137 0.94711 0.93984 0.90418 0.91789 0.92114 0.88606 0.88017 0.90547 0.88709 0.96106 0.96875 0.92584 0.92767 0.90604 0.91340 0.89199 0.93894 0.94232 0.78685 0.94338 0.93348 0.78557 0.89993 0.90587 0.90387 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.24 37.16 0.38 -1.27 16 2 C 0.11 1.32 6.62 -4.04 -0.03 1.29 16 3 N -0.46 -7.43 2.81 -114.08 -0.32 -7.75 16 4 C 0.21 4.02 7.32 -154.02 -1.13 2.89 16 5 C -0.02 -0.45 5.35 -27.88 -0.15 -0.60 16 6 C 0.00 -0.09 4.02 -27.89 -0.11 -0.20 16 7 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 11 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 15 N -0.30 -6.21 12.18 32.99 0.40 -5.80 16 16 N -0.31 -5.99 12.19 30.31 0.37 -5.62 16 17 C 0.32 5.15 6.41 -318.88 -2.05 3.11 16 18 N -0.46 -5.66 4.67 -174.55 -0.82 -6.48 16 19 C 0.06 0.79 5.14 -3.83 -0.02 0.77 16 20 C -0.09 -0.93 4.59 -26.65 -0.12 -1.06 16 21 C -0.06 -0.48 0.52 -154.39 -0.08 -0.56 16 22 C 0.09 0.66 5.92 37.16 0.22 0.88 16 23 O -0.55 -4.60 11.05 -57.20 -0.63 -5.23 16 24 C 0.08 0.74 5.33 37.15 0.20 0.94 16 25 O -0.55 -5.25 10.97 -57.20 -0.63 -5.88 16 26 C -0.10 -0.76 4.88 -26.65 -0.13 -0.89 16 27 C 0.07 0.69 5.12 -3.83 -0.02 0.67 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.33 7.80 -51.93 -0.41 0.93 16 33 H 0.08 1.35 7.88 -51.93 -0.41 0.94 16 34 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 37 H 0.26 7.50 8.31 -40.81 -0.34 7.16 16 38 H 0.05 0.73 6.51 -51.93 -0.34 0.39 16 39 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.03 7.26 -51.93 -0.38 0.65 16 42 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 43 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.37 1.58 9.12 45.56 0.42 2.00 16 45 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.05 0.48 4.92 -51.93 -0.26 0.23 16 47 H 0.37 2.22 9.12 45.56 0.42 2.64 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 51 H 0.05 0.61 6.51 -51.93 -0.34 0.27 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -35.16 398.62 -10.11 -45.27 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.14 Total: 1.57 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.47 Total: -6.81 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.41 Total: -52.05 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.26 Total: -11.11 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.16 -10.11 -45.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121759337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.899 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds