Wall clock time and date at job start Tue Mar 31 2020 21:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47049 * 2 1 4 4 C 1.36735 * 127.13638 * 91.29780 * 3 2 1 5 5 C 1.50703 * 126.34778 * 0.02562 * 4 3 2 6 6 C 1.52998 * 109.47633 * 89.99850 * 5 4 3 7 7 C 1.50695 * 109.47427 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99927 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99936 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99361 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 119.99831 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47270 * 90.00002 * 11 9 7 13 13 H 1.48503 * 109.46839 * 209.99767 * 11 9 7 14 14 H 1.48500 * 109.47431 * 329.99756 * 11 9 7 15 15 N 1.30292 * 107.30546 * 180.25822 * 4 3 2 16 16 N 1.28521 * 110.05335 * 359.56165 * 15 4 3 17 17 C 1.31216 * 109.86211 * 0.44904 * 16 15 4 18 18 N 1.38577 * 126.47939 * 179.73120 * 17 16 15 19 19 C 1.46843 * 111.00052 * 63.27562 * 18 17 16 20 20 C 1.53040 * 109.52550 * 174.16441 * 19 18 17 21 21 C 1.53119 * 109.27762 * 59.18337 * 20 19 18 22 22 C 1.52995 * 109.52143 * 182.44134 * 21 20 19 23 23 O 1.42898 * 109.47390 * 299.68260 * 22 21 20 24 24 C 1.52995 * 109.52258 * 62.25062 * 21 20 19 25 25 O 1.42895 * 109.47216 * 60.31793 * 24 21 20 26 26 C 1.53121 * 109.15593 * 302.34526 * 21 20 19 27 27 C 1.46853 * 110.99864 * 299.07309 * 18 17 16 28 28 H 1.08996 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47174 * 300.00323 * 1 2 3 30 30 H 1.09003 * 109.46934 * 59.99880 * 1 2 3 31 31 H 1.09003 * 109.46851 * 240.00075 * 2 1 3 32 32 H 1.09003 * 109.46934 * 120.00120 * 2 1 3 33 33 H 1.09007 * 109.46650 * 329.99759 * 5 4 3 34 34 H 1.09002 * 109.47141 * 210.00274 * 5 4 3 35 35 H 1.08996 * 109.46785 * 59.99875 * 6 5 4 36 36 H 1.09003 * 109.46749 * 300.00664 * 6 5 4 37 37 H 0.97011 * 119.99110 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.46849 * 294.18488 * 19 18 17 39 39 H 1.09007 * 109.46261 * 54.14518 * 19 18 17 40 40 H 1.09002 * 109.50052 * 299.23569 * 20 19 18 41 41 H 1.09005 * 109.53387 * 179.14048 * 20 19 18 42 42 H 1.09009 * 109.47588 * 59.68097 * 22 21 20 43 43 H 1.09001 * 109.47619 * 179.67857 * 22 21 20 44 44 H 0.96698 * 114.00403 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.47034 * 180.31483 * 24 21 20 46 46 H 1.08994 * 109.47337 * 300.31573 * 24 21 20 47 47 H 0.96703 * 114.00024 * 179.97438 * 25 24 21 48 48 H 1.09001 * 109.50410 * 297.71303 * 26 21 20 49 49 H 1.09005 * 109.52939 * 177.62263 * 26 21 20 50 50 H 1.09004 * 109.45855 * 305.84969 * 27 18 17 51 51 H 1.08992 * 109.46542 * 65.81727 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3168 2.1513 1.0898 5 6 2.2053 1.7363 2.5342 6 6 3.5273 1.1156 2.9901 7 6 3.4157 0.7001 4.4343 8 1 2.4938 0.8620 4.9731 9 6 4.4901 0.1121 5.0676 10 7 4.3923 -0.2510 6.3278 11 14 6.0843 -0.1687 4.1355 12 1 6.9624 1.0192 4.2875 13 1 6.7725 -1.3661 4.6814 14 1 5.7855 -0.3825 2.6967 15 7 2.7106 3.3121 0.6480 16 7 2.6902 3.3246 -0.6370 17 6 2.2698 2.1661 -1.0875 18 7 2.1111 1.8074 -2.4166 19 6 3.3984 1.8220 -3.1230 20 6 3.2089 1.2831 -4.5427 21 6 2.1898 2.1543 -5.2824 22 6 1.9506 1.5846 -6.6820 23 8 3.1799 1.5788 -7.4105 24 6 2.7249 3.5831 -5.3950 25 8 3.9536 3.5755 -6.1246 26 6 0.8732 2.1610 -4.5006 27 6 1.1304 2.6745 -3.0822 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.4044 1.0047 2.6413 34 1 1.9836 2.6099 3.1472 35 1 4.3282 1.8472 2.8830 36 1 3.7490 0.2420 2.3771 37 1 5.1484 -0.6643 6.7734 38 1 3.7756 2.8437 -3.1696 39 1 4.1128 1.1955 -2.5889 40 1 2.8450 0.2566 -4.4967 41 1 4.1614 1.3081 -5.0722 42 1 1.5721 0.5657 -6.5999 43 1 1.2208 2.2020 -7.2058 44 1 3.1030 1.2299 -8.3091 45 1 1.9964 4.2038 -5.9167 46 1 2.8974 3.9863 -4.3972 47 1 4.3507 4.4503 -6.2353 48 1 0.4725 1.1484 -4.4540 49 1 0.1565 2.8133 -4.9996 50 1 0.1974 2.6671 -2.5185 51 1 1.5181 3.6921 -3.1291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121759337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:20 Heat of formation + Delta-G solvation = -46.846358 kcal Electronic energy + Delta-G solvation = -30976.729274 eV Core-core repulsion = 26911.339835 eV Total energy + Delta-G solvation = -4065.389440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.08179 -41.06846 -38.03832 -36.85318 -36.81958 -35.96944 -34.83206 -33.71217 -32.06220 -31.48250 -30.61259 -28.21308 -27.07670 -26.81616 -25.04158 -24.36193 -23.76140 -23.14974 -21.81607 -21.43036 -19.41814 -19.03397 -18.50220 -18.33924 -17.71006 -17.45863 -17.18683 -16.60052 -16.37991 -15.86899 -15.81935 -15.63851 -15.18318 -14.92371 -14.83376 -14.59875 -14.36027 -14.24791 -14.17158 -14.05319 -13.52529 -13.34923 -13.23655 -13.17467 -13.02489 -12.97619 -12.56249 -12.38021 -12.26901 -12.20022 -12.06801 -11.83888 -11.65824 -11.57924 -11.46939 -11.43724 -11.32458 -11.11619 -10.80192 -10.75151 -10.62494 -10.02035 -9.84425 -8.32237 -6.35866 0.66461 1.21494 1.31422 1.34105 1.43203 1.70742 2.31508 2.59547 3.03126 3.23612 3.35363 3.40132 3.61497 3.67671 3.89607 3.97493 4.02859 4.05127 4.09036 4.19459 4.21465 4.28719 4.35402 4.40394 4.47843 4.50443 4.58418 4.60905 4.62743 4.64569 4.68184 4.73902 4.76263 4.80436 4.87231 4.91290 5.01346 5.08605 5.15965 5.17518 5.25488 5.27710 5.30033 5.38612 5.50360 5.62049 5.68843 6.19424 6.22494 6.71014 6.98013 7.10895 7.28665 7.65167 8.83686 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.002682 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.301441 B =10436.011034 C =10896.888262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 N -0.458 5.458 4 C 0.200 3.800 5 C -0.010 4.010 6 C 0.005 3.995 7 C -0.525 4.525 8 H 0.049 0.951 9 C 0.017 3.983 10 N -0.942 5.942 11 Si 0.938 3.062 12 H -0.275 1.275 13 H -0.278 1.278 14 H -0.256 1.256 15 N -0.331 5.331 16 N -0.347 5.347 17 C 0.339 3.661 18 N -0.447 5.447 19 C 0.069 3.931 20 C -0.081 4.081 21 C -0.060 4.060 22 C 0.094 3.906 23 O -0.570 6.570 24 C 0.085 3.915 25 O -0.563 6.563 26 C -0.093 4.093 27 C 0.065 3.935 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.006 0.994 36 H 0.019 0.981 37 H 0.268 0.732 38 H 0.037 0.963 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.384 0.616 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.382 0.618 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.080 0.920 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.430 0.521 -31.590 33.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.150 5.150 4 C -0.069 4.069 5 C -0.050 4.050 6 C -0.034 4.034 7 C -0.563 4.563 8 H 0.068 0.932 9 C -0.182 4.182 10 N -0.582 5.582 11 Si 0.763 3.237 12 H -0.200 1.200 13 H -0.203 1.203 14 H -0.180 1.180 15 N -0.171 5.171 16 N -0.191 5.191 17 C -0.018 4.018 18 N -0.174 5.174 19 C -0.058 4.058 20 C -0.119 4.119 21 C -0.060 4.060 22 C 0.016 3.984 23 O -0.376 6.376 24 C 0.007 3.993 25 O -0.369 6.369 26 C -0.130 4.130 27 C -0.061 4.061 28 H 0.123 0.877 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.025 0.975 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.232 0.768 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.229 0.771 48 H 0.114 0.886 49 H 0.120 0.880 50 H 0.098 0.902 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.945 0.963 -30.940 32.514 hybrid contribution 0.808 -0.057 0.105 0.817 sum -9.137 0.905 -30.836 32.174 Atomic orbital electron populations 1.22050 0.91904 1.04780 1.02459 1.22206 0.97372 0.77023 1.05811 1.46628 1.48570 1.14751 1.05039 1.25281 1.00417 0.88377 0.92806 1.19965 1.00038 1.01817 0.83157 1.19375 0.93572 0.95319 0.95104 1.21281 1.00010 1.39259 0.95795 0.93245 1.25776 1.02049 0.94871 0.95455 1.70024 1.32911 1.43091 1.12177 0.85844 0.79927 0.78106 0.79841 1.20049 1.20294 1.18011 1.73951 1.20581 1.19298 1.03282 1.74413 1.20995 1.19826 1.03819 1.22538 1.02271 0.87681 0.89298 1.58865 1.11764 1.52642 0.94133 1.22159 0.87970 1.00234 0.95397 1.21383 1.00318 0.99218 0.91018 1.20744 0.95594 0.94472 0.95176 1.22053 0.86329 0.99491 0.90555 1.86681 1.32403 1.87779 1.30730 1.22211 0.86739 0.96143 0.94239 1.86642 1.38294 1.34789 1.77141 1.21576 0.95693 1.04335 0.91429 1.22237 0.94230 0.93937 0.95728 0.87730 0.92995 0.91615 0.86791 0.88609 0.88618 0.89381 0.97523 0.96231 0.92330 0.94510 0.92210 0.90405 0.90771 0.92562 0.92676 0.76779 0.92824 0.95224 0.77121 0.88580 0.88045 0.90155 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 10.24 71.98 0.74 -1.97 16 2 C 0.10 2.21 6.62 86.38 0.57 2.78 16 3 N -0.46 -14.24 2.81 -514.84 -1.45 -15.69 16 4 C 0.20 7.58 7.32 137.64 1.01 8.59 16 5 C -0.01 -0.39 5.35 29.85 0.16 -0.23 16 6 C 0.00 0.23 4.02 29.85 0.12 0.35 16 7 C -0.53 -29.34 9.66 25.60 0.25 -29.10 16 8 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 9 C 0.02 0.95 5.47 84.66 0.46 1.42 16 10 N -0.94 -57.82 13.96 21.45 0.30 -57.52 16 11 Si 0.94 44.86 27.47 68.60 1.88 46.75 16 12 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.26 -11.63 6.54 99.48 0.65 -10.97 16 15 N -0.33 -14.01 12.18 -49.54 -0.60 -14.61 16 16 N -0.35 -13.35 12.19 -58.01 -0.71 -14.06 16 17 C 0.34 10.63 6.41 260.11 1.67 12.30 16 18 N -0.45 -10.39 4.67 -706.15 -3.30 -13.69 16 19 C 0.07 1.64 5.14 86.33 0.44 2.09 16 20 C -0.08 -1.49 4.59 30.65 0.14 -1.35 16 21 C -0.06 -0.84 0.52 -52.10 -0.03 -0.87 16 22 C 0.09 1.03 5.92 71.98 0.43 1.45 16 23 O -0.57 -8.24 11.05 -127.98 -1.41 -9.66 16 24 C 0.08 1.36 5.33 71.98 0.38 1.74 16 25 O -0.56 -10.25 10.97 -127.98 -1.40 -11.65 16 26 C -0.09 -1.04 4.88 30.65 0.15 -0.89 16 27 C 0.07 1.20 5.12 86.32 0.44 1.65 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.10 2.33 7.80 -2.39 -0.02 2.31 16 33 H 0.10 3.32 7.88 -2.38 -0.02 3.30 16 34 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 35 H 0.01 0.32 7.57 -2.39 -0.02 0.30 16 36 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 37 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 38 H 0.04 1.00 6.51 -2.39 -0.02 0.99 16 39 H 0.06 1.58 8.10 -2.38 -0.02 1.56 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.63 7.26 -2.38 -0.02 1.62 16 42 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.38 2.38 9.12 -74.06 -0.68 1.70 16 45 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.03 0.58 4.92 -2.39 -0.01 0.57 16 47 H 0.38 4.34 9.12 -74.06 -0.68 3.67 16 48 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 50 H 0.08 1.47 8.10 -2.38 -0.02 1.45 16 51 H 0.04 0.89 6.51 -2.39 -0.02 0.88 16 Total: -1.00 -77.16 398.62 -0.22 -77.38 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -0.46 Total: 14.78 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 6.93 Total: -2.04 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -5.75 Total: -115.56 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -2.82 Total: -21.31 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -77.16 -0.22 -77.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121759337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.535 kcal (2) G-P(sol) polarization free energy of solvation -77.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds