Wall clock time and date at job start Tue Mar 31 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46872 * 2 1 4 4 C 1.42895 * 114.00145 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47476 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47299 * 180.02562 * 5 4 3 7 7 N 1.46508 * 109.47209 * 179.97438 * 6 5 4 8 8 C 1.36454 * 127.13428 * 85.43245 * 7 6 5 9 9 N 1.38583 * 126.47221 * 359.97438 * 8 7 6 10 10 C 1.46904 * 110.99792 * 237.38108 * 9 8 7 11 11 C 1.46906 * 110.99569 * 113.43505 * 9 8 7 12 12 H 1.09001 * 109.46904 * 309.99467 * 11 9 8 13 13 C 1.53000 * 109.47488 * 69.99495 * 11 9 8 14 14 C 1.50700 * 109.46869 * 189.99538 * 11 9 8 15 15 H 1.08002 * 120.00291 * 359.97438 * 14 11 9 16 16 C 1.37876 * 119.99900 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99901 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99843 * 180.02562 * 16 14 11 19 19 H 1.48491 * 109.47212 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47019 * 120.00291 * 18 16 14 21 21 H 1.48501 * 109.46962 * 239.99886 * 18 16 14 22 22 N 1.31220 * 107.05165 * 180.02562 * 8 7 6 23 23 N 1.28534 * 109.85802 * 359.97438 * 22 8 7 24 24 C 1.30288 * 110.05297 * 0.02562 * 23 22 8 25 25 C 1.50702 * 126.34643 * 179.73268 * 24 23 22 26 26 O 1.42895 * 115.55474 * 238.54555 * 25 24 23 27 27 C 1.53011 * 117.49477 * 92.87293 * 25 24 23 28 28 C 1.53000 * 117.49539 * 24.21563 * 25 24 23 29 29 H 1.09006 * 109.46740 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47160 * 299.99866 * 1 2 3 31 31 H 1.08996 * 109.47498 * 60.00195 * 1 2 3 32 32 H 1.08996 * 109.47160 * 240.00134 * 2 1 3 33 33 H 1.09001 * 109.46965 * 120.00267 * 2 1 3 34 34 H 1.08996 * 109.46907 * 59.99678 * 4 3 2 35 35 H 1.08999 * 109.47014 * 300.00033 * 4 3 2 36 36 H 1.09001 * 109.47263 * 59.99124 * 5 4 3 37 37 H 1.08999 * 109.46817 * 299.99898 * 5 4 3 38 38 H 1.08996 * 109.47607 * 59.99999 * 6 5 4 39 39 H 1.08997 * 109.46639 * 299.99210 * 6 5 4 40 40 H 1.08999 * 109.46976 * 65.62647 * 10 9 8 41 41 H 1.09007 * 109.46860 * 185.62407 * 10 9 8 42 42 H 1.08998 * 109.47479 * 305.62208 * 10 9 8 43 43 H 1.08991 * 109.47263 * 179.97438 * 13 11 9 44 44 H 1.08996 * 109.47046 * 300.00663 * 13 11 9 45 45 H 1.09001 * 109.46651 * 59.99739 * 13 11 9 46 46 H 0.96999 * 119.99882 * 179.97438 * 17 16 14 47 47 H 0.96701 * 114.00082 * 292.07057 * 26 25 24 48 48 H 1.09000 * 117.50051 * 0.02562 * 27 25 24 49 49 H 1.09001 * 117.49176 * 145.02606 * 27 25 24 50 50 H 1.09000 * 117.50001 * 214.97597 * 28 25 24 51 51 H 1.08999 * 117.50517 * 0.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3505 3.0593 -0.0012 7 7 5.7282 4.4749 -0.0011 8 6 5.8578 5.2928 1.0834 9 7 5.6553 4.9420 2.4087 10 6 4.6331 5.7955 3.0289 11 6 6.9137 4.9936 3.1650 12 1 7.6836 4.4401 2.6274 13 6 7.3521 6.4504 3.3270 14 6 6.7082 4.3767 4.5245 15 1 5.7397 3.9858 4.7994 16 6 7.7568 4.3112 5.4174 17 7 8.9361 4.7876 5.0829 18 14 7.5023 3.5459 7.1024 19 1 6.0955 3.0881 7.2307 20 1 8.4162 2.3865 7.2625 21 1 7.7931 4.5542 8.1530 22 7 6.2093 6.4746 0.6342 23 7 6.3060 6.4436 -0.6471 24 6 6.0238 5.2504 -1.0877 25 6 6.0180 4.8085 -2.5285 26 8 4.7766 4.2891 -3.0089 27 6 7.3039 4.1924 -3.0835 28 6 6.8813 5.5995 -3.5134 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8332 0.9768 -0.8908 35 1 3.8339 0.9766 0.8891 36 1 3.4228 3.4215 0.8905 37 1 3.4221 3.4225 -0.8894 38 1 5.7525 2.5765 -0.8918 39 1 5.7539 2.5753 0.8882 40 1 3.6691 5.6107 2.5548 41 1 4.5648 5.5663 4.0924 42 1 4.9068 6.8426 2.8998 43 1 8.2855 6.4886 3.8885 44 1 7.5006 6.8966 2.3437 45 1 6.5821 7.0038 3.8646 46 1 9.6736 4.7420 5.7112 47 1 4.5243 3.4437 -2.6129 48 1 8.1538 4.1062 -2.4065 49 1 7.2027 3.3910 -3.8155 50 1 6.5025 5.7232 -4.5279 51 1 7.4538 6.4392 -3.1192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122676345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:37 Heat of formation + Delta-G solvation = 27.855547 kcal Electronic energy + Delta-G solvation = -31042.832280 eV Core-core repulsion = 26980.682158 eV Total energy + Delta-G solvation = -4062.150122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65720 -38.61891 -38.36793 -37.15407 -35.72976 -34.25293 -32.88598 -32.46430 -30.66072 -29.62584 -28.48980 -26.17021 -25.33589 -25.19296 -23.49327 -23.04010 -22.78329 -22.18515 -21.28807 -20.34015 -19.46179 -17.83242 -16.96454 -16.61310 -16.43543 -16.33547 -15.70629 -15.52132 -15.33340 -15.00016 -14.69739 -14.46638 -14.45754 -13.67732 -13.44829 -13.11832 -13.10440 -12.90462 -12.42991 -12.40674 -12.10943 -11.94162 -11.85550 -11.70726 -11.53222 -11.36506 -11.25466 -11.18280 -11.08829 -10.99206 -10.80830 -10.68694 -10.55120 -10.42827 -10.19017 -10.09851 -9.92668 -9.83116 -9.78158 -8.94281 -8.53263 -8.48278 -7.78072 -6.10740 -4.17078 1.97501 2.45613 3.12666 3.23785 3.32224 3.35621 3.40140 3.50967 3.64960 4.20864 4.29396 4.46155 4.55621 4.67357 4.76736 4.80135 4.83935 4.85850 4.96387 5.03676 5.10079 5.18831 5.21316 5.33130 5.37367 5.42823 5.44828 5.61783 5.67419 5.72904 5.74905 5.83784 5.89888 5.97143 6.00492 6.10721 6.32031 6.38108 6.57303 6.77938 6.90125 6.98183 7.02826 7.15121 7.19865 7.45962 7.60328 7.72338 7.89334 8.22127 8.41463 8.86845 9.15012 9.48006 10.95967 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007583 B = 0.004241 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.673382 B = 6600.310224 C = 9400.487507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.069 3.931 5 C -0.134 4.134 6 C 0.116 3.884 7 N -0.463 5.463 8 C 0.386 3.614 9 N -0.470 5.470 10 C 0.045 3.955 11 C 0.226 3.774 12 H 0.035 0.965 13 C -0.175 4.175 14 C -0.506 4.506 15 H 0.066 0.934 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.311 5.311 23 N -0.273 5.273 24 C 0.167 3.833 25 C 0.130 3.870 26 O -0.513 6.513 27 C -0.190 4.190 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.036 0.964 45 H 0.032 0.968 46 H 0.262 0.738 47 H 0.374 0.626 48 H 0.104 0.896 49 H 0.109 0.891 50 H 0.110 0.890 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -9.405 -14.564 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.307 6.307 4 C -0.009 4.009 5 C -0.173 4.173 6 C -0.008 4.008 7 N -0.156 5.156 8 C 0.030 3.970 9 N -0.196 5.196 10 C -0.102 4.102 11 C 0.121 3.879 12 H 0.052 0.948 13 C -0.234 4.234 14 C -0.545 4.545 15 H 0.084 0.916 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 N -0.155 5.155 23 N -0.115 5.115 24 C -0.101 4.101 25 C 0.086 3.914 26 O -0.318 6.318 27 C -0.229 4.229 28 C -0.156 4.156 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.128 0.872 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.223 0.777 48 H 0.122 0.878 49 H 0.127 0.873 50 H 0.128 0.872 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.226 -7.736 -14.814 19.089 hybrid contribution 0.008 -1.844 1.407 2.319 sum -9.218 -9.579 -13.407 18.881 Atomic orbital electron populations 1.21746 0.93764 1.02178 1.03237 1.22459 0.95620 0.83719 1.00117 1.87891 1.20845 1.26493 1.95456 1.22307 0.81629 0.96252 1.00679 1.21853 0.94150 0.96249 1.05009 1.21651 0.95443 0.78593 1.05113 1.46246 1.51796 1.11199 1.06405 1.22966 0.98590 0.85675 0.89753 1.59455 1.13859 1.51949 0.94337 1.22254 0.92001 0.95220 1.00756 1.19404 0.82396 0.93908 0.92168 0.94755 1.22455 1.03300 0.97699 0.99973 1.21028 0.97183 1.38831 0.97454 0.91575 1.24911 0.95027 0.95425 0.98639 1.69921 1.01279 1.45630 1.35848 0.86414 0.78267 0.78867 0.83706 1.19645 1.21060 1.20974 1.74812 1.19873 1.18613 1.02154 1.73918 1.17410 1.15885 1.04242 1.23744 1.07400 0.89424 0.89489 1.18710 0.83257 1.04639 0.84805 1.86601 1.37052 1.41411 1.66689 1.23770 0.97582 0.97779 1.03737 1.23208 0.98382 0.95534 0.98498 0.91149 0.91722 0.91899 0.93474 0.93211 0.93204 0.92375 0.89283 0.90658 0.89554 0.87168 0.93650 0.89130 0.94090 0.89499 0.94538 0.94924 0.92831 0.77721 0.87799 0.87265 0.87190 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.39 -4.35 10.34 -35.23 -0.36 -4.71 16 4 C 0.07 0.66 5.94 37.16 0.22 0.88 16 5 C -0.13 -1.53 5.73 -26.73 -0.15 -1.68 16 6 C 0.12 1.43 5.61 -4.04 -0.02 1.40 16 7 N -0.46 -7.74 2.81 -114.08 -0.32 -8.06 16 8 C 0.39 7.91 6.26 -318.86 -2.00 5.91 16 9 N -0.47 -9.99 4.74 -176.07 -0.83 -10.82 16 10 C 0.05 0.89 8.53 60.07 0.51 1.41 16 11 C 0.23 5.60 2.28 -68.86 -0.16 5.44 16 12 H 0.03 0.95 8.05 -51.93 -0.42 0.54 16 13 C -0.18 -4.41 8.17 37.16 0.30 -4.10 16 14 C -0.51 -13.18 7.83 -34.44 -0.27 -13.45 16 15 H 0.07 1.70 7.17 -52.49 -0.38 1.32 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 18 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 N -0.31 -6.89 9.84 30.32 0.30 -6.59 16 23 N -0.27 -5.53 12.01 32.99 0.40 -5.14 16 24 C 0.17 2.81 7.41 -154.03 -1.14 1.67 16 25 C 0.13 1.68 2.79 -91.77 -0.26 1.42 16 26 O -0.51 -6.11 13.79 -35.23 -0.49 -6.60 16 27 C -0.19 -1.93 10.19 -26.68 -0.27 -2.20 16 28 C -0.12 -1.33 10.11 -26.69 -0.27 -1.60 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.85 6.91 -51.93 -0.36 0.49 16 38 H 0.09 0.78 7.48 -51.93 -0.39 0.40 16 39 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.09 1.81 6.65 -51.93 -0.35 1.47 16 42 H 0.04 0.84 6.59 -51.93 -0.34 0.50 16 43 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 44 H 0.04 0.91 6.00 -51.93 -0.31 0.60 16 45 H 0.03 0.79 6.54 -51.93 -0.34 0.45 16 46 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.37 3.25 6.84 45.56 0.31 3.56 16 48 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.12 1.42 8.09 -51.93 -0.42 1.00 16 LS Contribution 409.35 15.07 6.17 6.17 Total: -1.00 -32.07 409.35 -10.44 -42.51 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.94 Total: 5.22 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.97 Total: -3.36 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.17 Total: -54.73 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.85 Total: -11.31 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.07 -10.44 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122676345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.368 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds