Wall clock time and date at job start Tue Mar 31 2020 21:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46872 * 2 1 4 4 C 1.42895 * 114.00145 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47476 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47299 * 180.02562 * 5 4 3 7 7 N 1.46508 * 109.47209 * 179.97438 * 6 5 4 8 8 C 1.36454 * 127.13428 * 85.43245 * 7 6 5 9 9 N 1.38583 * 126.47221 * 359.97438 * 8 7 6 10 10 C 1.46904 * 110.99792 * 237.38108 * 9 8 7 11 11 C 1.46906 * 110.99569 * 113.43505 * 9 8 7 12 12 H 1.09001 * 109.46904 * 309.99467 * 11 9 8 13 13 C 1.53000 * 109.47488 * 69.99495 * 11 9 8 14 14 C 1.50700 * 109.46869 * 189.99538 * 11 9 8 15 15 H 1.08002 * 120.00291 * 359.97438 * 14 11 9 16 16 C 1.37876 * 119.99900 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99901 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99843 * 180.02562 * 16 14 11 19 19 H 1.48491 * 109.47212 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47019 * 120.00291 * 18 16 14 21 21 H 1.48501 * 109.46962 * 239.99886 * 18 16 14 22 22 N 1.31220 * 107.05165 * 180.02562 * 8 7 6 23 23 N 1.28534 * 109.85802 * 359.97438 * 22 8 7 24 24 C 1.30288 * 110.05297 * 0.02562 * 23 22 8 25 25 C 1.50702 * 126.34643 * 179.73268 * 24 23 22 26 26 O 1.42895 * 115.55474 * 238.54555 * 25 24 23 27 27 C 1.53011 * 117.49477 * 92.87293 * 25 24 23 28 28 C 1.53000 * 117.49539 * 24.21563 * 25 24 23 29 29 H 1.09006 * 109.46740 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47160 * 299.99866 * 1 2 3 31 31 H 1.08996 * 109.47498 * 60.00195 * 1 2 3 32 32 H 1.08996 * 109.47160 * 240.00134 * 2 1 3 33 33 H 1.09001 * 109.46965 * 120.00267 * 2 1 3 34 34 H 1.08996 * 109.46907 * 59.99678 * 4 3 2 35 35 H 1.08999 * 109.47014 * 300.00033 * 4 3 2 36 36 H 1.09001 * 109.47263 * 59.99124 * 5 4 3 37 37 H 1.08999 * 109.46817 * 299.99898 * 5 4 3 38 38 H 1.08996 * 109.47607 * 59.99999 * 6 5 4 39 39 H 1.08997 * 109.46639 * 299.99210 * 6 5 4 40 40 H 1.08999 * 109.46976 * 65.62647 * 10 9 8 41 41 H 1.09007 * 109.46860 * 185.62407 * 10 9 8 42 42 H 1.08998 * 109.47479 * 305.62208 * 10 9 8 43 43 H 1.08991 * 109.47263 * 179.97438 * 13 11 9 44 44 H 1.08996 * 109.47046 * 300.00663 * 13 11 9 45 45 H 1.09001 * 109.46651 * 59.99739 * 13 11 9 46 46 H 0.96999 * 119.99882 * 179.97438 * 17 16 14 47 47 H 0.96701 * 114.00082 * 292.07057 * 26 25 24 48 48 H 1.09000 * 117.50051 * 0.02562 * 27 25 24 49 49 H 1.09001 * 117.49176 * 145.02606 * 27 25 24 50 50 H 1.09000 * 117.50001 * 214.97597 * 28 25 24 51 51 H 1.08999 * 117.50517 * 0.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3505 3.0593 -0.0012 7 7 5.7282 4.4749 -0.0011 8 6 5.8578 5.2928 1.0834 9 7 5.6553 4.9420 2.4087 10 6 4.6331 5.7955 3.0289 11 6 6.9137 4.9936 3.1650 12 1 7.6836 4.4401 2.6274 13 6 7.3521 6.4504 3.3270 14 6 6.7082 4.3767 4.5245 15 1 5.7397 3.9858 4.7994 16 6 7.7568 4.3112 5.4174 17 7 8.9361 4.7876 5.0829 18 14 7.5023 3.5459 7.1024 19 1 6.0955 3.0881 7.2307 20 1 8.4162 2.3865 7.2625 21 1 7.7931 4.5542 8.1530 22 7 6.2093 6.4746 0.6342 23 7 6.3060 6.4436 -0.6471 24 6 6.0238 5.2504 -1.0877 25 6 6.0180 4.8085 -2.5285 26 8 4.7766 4.2891 -3.0089 27 6 7.3039 4.1924 -3.0835 28 6 6.8813 5.5995 -3.5134 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8332 0.9768 -0.8908 35 1 3.8339 0.9766 0.8891 36 1 3.4228 3.4215 0.8905 37 1 3.4221 3.4225 -0.8894 38 1 5.7525 2.5765 -0.8918 39 1 5.7539 2.5753 0.8882 40 1 3.6691 5.6107 2.5548 41 1 4.5648 5.5663 4.0924 42 1 4.9068 6.8426 2.8998 43 1 8.2855 6.4886 3.8885 44 1 7.5006 6.8966 2.3437 45 1 6.5821 7.0038 3.8646 46 1 9.6736 4.7420 5.7112 47 1 4.5243 3.4437 -2.6129 48 1 8.1538 4.1062 -2.4065 49 1 7.2027 3.3910 -3.8155 50 1 6.5025 5.7232 -4.5279 51 1 7.4538 6.4392 -3.1192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122676345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:36 Heat of formation + Delta-G solvation = 7.626016 kcal Electronic energy + Delta-G solvation = -31043.709498 eV Core-core repulsion = 26980.682158 eV Total energy + Delta-G solvation = -4063.027340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.10030 -39.65856 -39.15678 -38.81868 -36.86802 -35.17957 -34.83663 -33.42244 -31.48265 -31.33232 -30.22688 -27.37699 -27.33399 -26.73810 -24.71351 -23.77081 -23.66500 -23.24416 -22.76702 -21.46497 -21.07715 -18.93511 -18.39314 -17.93822 -17.62490 -17.35699 -17.05156 -16.93909 -16.51226 -16.43461 -15.82276 -15.51475 -15.35531 -15.29811 -14.83671 -14.39995 -14.18980 -13.98244 -13.89522 -13.44211 -13.16066 -13.14948 -13.10993 -12.89040 -12.77944 -12.70034 -12.61225 -12.56784 -12.50228 -12.34751 -12.14966 -12.04690 -11.94175 -11.92670 -11.67272 -11.63610 -11.21950 -11.09651 -10.88816 -10.54367 -10.53310 -10.00282 -9.53656 -8.14936 -6.28478 0.59524 1.15786 1.43602 1.46036 1.57615 1.67421 2.40631 2.51922 2.59639 2.71074 3.03711 3.15559 3.21441 3.47102 3.78085 3.86654 3.93267 4.00505 4.05986 4.15150 4.20967 4.27583 4.34922 4.41579 4.48660 4.53783 4.58238 4.62276 4.64951 4.68268 4.70282 4.78632 4.87072 4.93070 4.96730 5.02556 5.05142 5.06174 5.08539 5.12077 5.15272 5.28616 5.34593 5.59800 5.60538 5.77418 5.98833 6.18678 6.28363 6.43699 6.57826 6.81376 7.40810 7.65632 8.92096 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007583 B = 0.004241 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.673382 B = 6600.310224 C = 9400.487507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.414 6.414 4 C 0.072 3.928 5 C -0.121 4.121 6 C 0.110 3.890 7 N -0.457 5.457 8 C 0.362 3.638 9 N -0.462 5.462 10 C 0.051 3.949 11 C 0.238 3.762 12 H -0.002 1.002 13 C -0.158 4.158 14 C -0.515 4.515 15 H 0.070 0.930 16 C 0.015 3.985 17 N -0.921 5.921 18 Si 0.967 3.033 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.283 1.283 22 N -0.345 5.345 23 N -0.312 5.312 24 C 0.187 3.813 25 C 0.110 3.890 26 O -0.514 6.514 27 C -0.160 4.160 28 C -0.121 4.121 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.263 0.737 47 H 0.388 0.612 48 H 0.095 0.905 49 H 0.145 0.855 50 H 0.132 0.868 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 -11.951 -16.168 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.334 6.334 4 C -0.005 4.005 5 C -0.160 4.160 6 C -0.011 4.011 7 N -0.149 5.149 8 C 0.005 3.995 9 N -0.188 5.188 10 C -0.097 4.097 11 C 0.132 3.868 12 H 0.016 0.984 13 C -0.218 4.218 14 C -0.553 4.553 15 H 0.088 0.912 16 C -0.184 4.184 17 N -0.560 5.560 18 Si 0.792 3.208 19 H -0.185 1.185 20 H -0.207 1.207 21 H -0.209 1.209 22 N -0.189 5.189 23 N -0.154 5.154 24 C -0.081 4.081 25 C 0.066 3.934 26 O -0.320 6.320 27 C -0.198 4.198 28 C -0.159 4.159 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.147 0.853 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.239 0.761 48 H 0.113 0.887 49 H 0.163 0.837 50 H 0.150 0.850 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.281 -10.310 -16.431 21.954 hybrid contribution 0.296 -1.065 1.779 2.094 sum -9.985 -11.374 -14.653 21.066 Atomic orbital electron populations 1.21779 0.93331 1.03324 1.02476 1.22660 0.96078 0.82657 1.01150 1.87854 1.21573 1.28315 1.95685 1.22310 0.81302 0.94713 1.02207 1.21692 0.93052 0.97693 1.03541 1.21985 0.96326 0.76244 1.06584 1.46440 1.50806 1.12446 1.05214 1.22877 1.00306 0.86390 0.89952 1.59329 1.12380 1.52299 0.94798 1.22226 0.92543 0.94201 1.00694 1.19046 0.83136 0.92665 0.91922 0.98371 1.22262 1.01973 0.98360 0.99164 1.21253 0.97340 1.38763 0.97954 0.91232 1.25727 0.94646 0.95764 1.02288 1.70059 1.02109 1.46689 1.37134 0.85371 0.78607 0.77872 0.78968 1.18537 1.20696 1.20945 1.74660 1.20742 1.20052 1.03434 1.73829 1.19869 1.18109 1.03557 1.24626 1.03939 0.88377 0.91203 1.18860 0.84906 1.07014 0.82665 1.86599 1.36622 1.42502 1.66282 1.23854 0.94903 0.98030 1.03049 1.23333 0.97704 0.95853 0.98987 0.89075 0.92943 0.92182 0.91598 0.92934 0.89868 0.92580 0.92530 0.90309 0.85343 0.88415 0.91498 0.89458 0.95380 0.91984 0.95022 0.94735 0.92812 0.76099 0.88687 0.83749 0.84962 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.41 -8.56 10.34 -148.98 -1.54 -10.10 16 4 C 0.07 1.20 5.94 71.98 0.43 1.63 16 5 C -0.12 -2.59 5.73 30.59 0.18 -2.42 16 6 C 0.11 2.55 5.61 86.38 0.48 3.04 16 7 N -0.46 -15.14 2.81 -514.85 -1.45 -16.58 16 8 C 0.36 15.23 6.26 260.11 1.63 16.86 16 9 N -0.46 -20.23 4.74 -710.96 -3.37 -23.59 16 10 C 0.05 2.05 8.53 127.69 1.09 3.14 16 11 C 0.24 12.24 2.28 44.17 0.10 12.34 16 12 H 0.00 -0.09 8.05 -2.39 -0.02 -0.11 16 13 C -0.16 -8.33 8.17 71.98 0.59 -7.74 16 14 C -0.51 -27.20 7.83 25.60 0.20 -27.00 16 15 H 0.07 3.57 7.17 -2.91 -0.02 3.55 16 16 C 0.01 0.80 5.30 84.65 0.45 1.25 16 17 N -0.92 -52.48 11.32 21.45 0.24 -52.24 16 18 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 N -0.35 -15.86 9.84 -58.00 -0.57 -16.43 16 23 N -0.31 -12.96 12.01 -49.54 -0.60 -13.56 16 24 C 0.19 6.20 7.41 137.64 1.02 7.22 16 25 C 0.11 2.57 2.79 -11.54 -0.03 2.54 16 26 O -0.51 -10.53 13.79 -148.98 -2.05 -12.58 16 27 C -0.16 -2.70 10.19 30.62 0.31 -2.39 16 28 C -0.12 -2.44 10.11 30.62 0.31 -2.13 16 29 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.62 6.91 -2.39 -0.02 1.61 16 38 H 0.13 1.88 7.48 -2.39 -0.02 1.86 16 39 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.09 3.54 6.65 -2.38 -0.02 3.52 16 42 H 0.03 1.19 6.59 -2.39 -0.02 1.17 16 43 H 0.06 3.56 6.07 -2.39 -0.01 3.54 16 44 H 0.03 1.66 6.00 -2.39 -0.01 1.64 16 45 H 0.03 1.73 6.54 -2.39 -0.02 1.72 16 46 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 47 H 0.39 5.19 6.84 -74.06 -0.51 4.68 16 48 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 51 H 0.10 2.40 8.09 -2.39 -0.02 2.38 16 Total: -1.00 -72.49 409.35 1.09 -71.40 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.42 Total: 23.24 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 7.97 Total: 6.31 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -5.74 Total: -122.41 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -3.59 Total: -22.69 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -72.49 1.09 -71.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122676345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.022 kcal (2) G-P(sol) polarization free energy of solvation -72.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds