Wall clock time and date at job start Tue Mar 31 2020 22:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47182 * 2 1 4 4 C 1.42901 * 113.99939 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46910 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.46965 * 180.02562 * 5 4 3 7 7 C 1.34256 * 125.75782 * 125.31987 * 6 5 4 8 8 C 1.38047 * 107.42211 * 180.14308 * 7 6 5 9 9 C 1.47425 * 126.42093 * 179.86491 * 8 7 6 10 10 O 1.21604 * 119.99770 * 359.71909 * 9 8 7 11 11 N 1.34770 * 120.00199 * 179.71071 * 9 8 7 12 12 C 1.46500 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46596 * 325.00243 * 12 11 9 14 14 C 1.53006 * 109.47249 * 84.99846 * 12 11 9 15 15 C 1.52997 * 109.47473 * 205.00145 * 12 11 9 16 16 C 1.53001 * 109.47049 * 64.99864 * 15 12 11 17 17 H 1.08995 * 109.47139 * 55.00312 * 16 15 12 18 18 C 1.52997 * 109.46947 * 175.00112 * 16 15 12 19 19 N 1.46503 * 109.46866 * 295.00204 * 16 15 12 20 20 C 1.36937 * 119.99616 * 155.00576 * 19 16 15 21 21 H 1.08001 * 120.00266 * 359.97438 * 20 19 16 22 22 C 1.38819 * 119.99577 * 180.02562 * 20 19 16 23 23 N 1.31614 * 120.00083 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99795 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47467 * 89.99429 * 24 22 20 26 26 H 1.48494 * 109.47236 * 209.99914 * 24 22 20 27 27 H 1.48509 * 109.47019 * 329.99755 * 24 22 20 28 28 C 1.41296 * 107.16387 * 359.60387 * 8 7 6 29 29 N 1.30444 * 108.02554 * 0.24429 * 28 8 7 30 30 H 1.08993 * 109.47092 * 59.99575 * 1 2 3 31 31 H 1.08997 * 109.47220 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46860 * 299.99708 * 1 2 3 33 33 H 1.09004 * 109.46860 * 240.00292 * 2 1 3 34 34 H 1.09003 * 109.46980 * 120.00340 * 2 1 3 35 35 H 1.08999 * 109.46862 * 60.00566 * 4 3 2 36 36 H 1.08993 * 109.47526 * 300.00200 * 4 3 2 37 37 H 1.08993 * 109.47377 * 60.00104 * 5 4 3 38 38 H 1.09000 * 109.47118 * 299.99608 * 5 4 3 39 39 H 1.08000 * 126.29415 * 359.97438 * 7 6 5 40 40 H 0.97005 * 120.00370 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.47002 * 60.00085 * 14 12 11 42 42 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 43 43 H 1.09000 * 109.47050 * 300.00351 * 14 12 11 44 44 H 1.08998 * 109.47192 * 185.00019 * 15 12 11 45 45 H 1.08998 * 109.46934 * 304.99865 * 15 12 11 46 46 H 1.09000 * 109.47226 * 180.02562 * 18 16 15 47 47 H 1.09000 * 109.47551 * 300.00236 * 18 16 15 48 48 H 1.09004 * 109.47081 * 60.00290 * 18 16 15 49 49 H 0.97002 * 120.00011 * 334.99563 * 19 16 15 50 50 H 0.97000 * 119.99717 * 180.02562 * 23 22 20 51 51 H 1.08002 * 125.98883 * 180.20417 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 7 5.2858 3.0540 0.0012 7 6 6.0182 3.7442 -0.8875 8 6 7.3445 3.5945 -0.5352 9 6 8.5062 4.1769 -1.2315 10 8 8.3404 4.8617 -2.2226 11 7 9.7518 3.9505 -0.7695 12 6 10.9061 4.5297 -1.4610 13 1 10.7151 4.5480 -2.5340 14 6 11.1377 5.9567 -0.9598 15 6 12.1481 3.6821 -1.1784 16 6 11.9661 2.2912 -1.7896 17 1 11.7382 2.3878 -2.8510 18 6 13.2550 1.4854 -1.6160 19 7 10.8642 1.6015 -1.1141 20 6 10.1768 0.6105 -1.7627 21 1 10.4467 0.3377 -2.7723 22 6 9.1322 -0.0427 -1.1229 23 7 8.8029 0.2901 0.1071 24 14 8.1940 -1.3940 -2.0079 25 1 8.8448 -2.7026 -1.7446 26 1 6.7939 -1.4293 -1.5145 27 1 8.1976 -1.1244 -3.4683 28 6 7.3798 2.7836 0.6213 29 7 6.1524 2.4684 0.9309 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.8340 0.9765 -0.8892 36 1 3.8334 0.9767 0.8907 37 1 3.4223 3.4216 0.8911 38 1 3.4230 3.4221 -0.8889 39 1 5.6395 4.3101 -1.7258 40 1 9.8841 3.4040 0.0210 41 1 11.3286 5.9384 0.1132 42 1 11.9963 6.3877 -1.4747 43 1 10.2529 6.5606 -1.1612 44 1 13.0227 4.1608 -1.6188 45 1 12.2879 3.5902 -0.1014 46 1 13.1256 0.4947 -2.0517 47 1 14.0750 1.9986 -2.1184 48 1 13.4830 1.3888 -0.5544 49 1 10.6216 1.8467 -0.2075 50 1 8.0733 -0.1666 0.5543 51 1 8.2674 2.4776 1.1551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135785125.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:38 Heat of formation + Delta-G solvation = 2.501229 kcal Electronic energy + Delta-G solvation = -30763.199835 eV Core-core repulsion = 26699.950267 eV Total energy + Delta-G solvation = -4063.249568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75948 -38.82396 -38.17648 -36.58157 -34.04839 -33.83107 -32.19283 -31.40699 -30.60842 -29.60493 -28.56906 -27.92356 -26.26493 -23.66892 -23.49519 -22.97954 -22.54566 -20.58693 -20.21925 -19.95414 -19.18023 -17.46691 -17.10830 -16.67281 -16.47109 -15.68241 -15.29340 -15.10689 -14.76739 -14.44669 -14.25927 -13.80591 -13.74465 -13.57163 -13.51896 -13.13326 -12.81869 -12.64797 -12.59139 -12.35668 -12.10376 -12.08666 -11.87525 -11.79347 -11.68466 -11.59648 -11.31364 -11.28784 -10.95408 -10.82567 -10.68787 -10.36958 -10.29456 -10.22122 -9.85041 -9.76021 -9.62715 -9.07046 -8.99993 -8.86109 -8.29923 -7.97327 -6.87119 -5.76624 -2.99007 2.06948 2.59334 3.02833 3.42119 3.48488 3.49995 3.64434 4.01673 4.34539 4.62032 4.65045 4.82684 4.85586 5.05128 5.16236 5.17944 5.19782 5.23877 5.38469 5.45677 5.50553 5.56966 5.62114 5.65121 5.68140 5.74379 5.76012 5.83858 5.87683 5.95875 6.04454 6.07732 6.12004 6.19883 6.29668 6.39179 6.43813 6.55846 6.63316 6.67290 6.90907 6.95330 7.10383 7.19602 7.29995 7.34724 7.75241 8.19537 8.40148 8.45767 9.12670 9.56384 10.09511 10.45576 11.46699 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012099 B = 0.003615 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.767537 B = 7743.462262 C = 9481.869945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.391 6.391 4 C 0.052 3.948 5 C 0.143 3.857 6 N -0.374 5.374 7 C 0.112 3.888 8 C -0.277 4.277 9 C 0.608 3.392 10 O -0.578 6.578 11 N -0.694 5.694 12 C 0.152 3.848 13 H 0.082 0.918 14 C -0.162 4.162 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.047 0.953 18 C -0.163 4.163 19 N -0.714 5.714 20 C -0.226 4.226 21 H 0.064 0.936 22 C -0.003 4.003 23 N -0.925 5.925 24 Si 0.896 3.104 25 H -0.294 1.294 26 H -0.296 1.296 27 H -0.287 1.287 28 C 0.142 3.858 29 N -0.310 5.310 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.177 0.823 40 H 0.402 0.598 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.034 0.966 48 H 0.045 0.955 49 H 0.377 0.623 50 H 0.254 0.746 51 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 6.452 2.066 9.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.310 6.310 4 C -0.025 4.025 5 C 0.021 3.979 6 N -0.155 5.155 7 C -0.038 4.038 8 C -0.292 4.292 9 C 0.397 3.603 10 O -0.460 6.460 11 N -0.345 5.345 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.220 4.220 15 C -0.172 4.172 16 C 0.060 3.940 17 H 0.065 0.935 18 C -0.223 4.223 19 N -0.357 5.357 20 C -0.357 4.357 21 H 0.082 0.918 22 C -0.199 4.199 23 N -0.574 5.574 24 Si 0.729 3.271 25 H -0.222 1.222 26 H -0.223 1.223 27 H -0.213 1.213 28 C -0.046 4.046 29 N -0.129 5.129 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.194 0.806 40 H 0.240 0.760 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.212 0.788 50 H 0.065 0.935 51 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.637 6.303 2.078 10.118 hybrid contribution 0.153 -1.179 -0.548 1.309 sum -7.484 5.124 1.529 9.199 Atomic orbital electron populations 1.21741 0.93601 1.02286 1.03056 1.22476 0.95428 0.83333 1.00573 1.87736 1.20538 1.27081 1.95676 1.22638 0.81123 0.96379 1.02402 1.21257 0.75235 0.96746 1.04649 1.48212 1.06008 1.39147 1.22103 1.22748 0.91253 0.95534 0.94296 1.20222 0.92876 1.12613 1.03458 1.17074 0.82342 0.78407 0.82527 1.90663 1.86354 1.41899 1.27042 1.45699 1.04697 1.52392 1.31720 1.20755 0.85393 0.91198 0.97964 0.90020 1.22212 1.01585 0.97256 1.00987 1.22203 0.96575 0.96881 1.01535 1.20274 0.88435 0.89167 0.96174 0.93503 1.22423 0.98220 1.01057 1.00630 1.42400 1.35675 1.41903 1.15709 1.19131 1.09618 1.09786 0.97182 0.91761 1.24448 0.99102 0.99921 0.96452 1.69439 1.32018 1.44433 1.11549 0.86341 0.79337 0.82602 0.78804 1.22150 1.22311 1.21256 1.24178 0.95352 0.91037 0.94008 1.77164 1.00750 1.21131 1.13856 0.91860 0.91045 0.91827 0.93238 0.93089 0.92620 0.91349 0.89062 0.88163 0.80586 0.76013 0.92871 0.92324 0.92410 0.90950 0.91787 0.92965 0.94680 0.93632 0.78818 0.93540 0.78681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.06 0.64 6.66 37.16 0.25 0.88 16 3 O -0.39 -5.03 10.34 -35.23 -0.36 -5.40 16 4 C 0.05 0.72 6.11 37.16 0.23 0.95 16 5 C 0.14 1.84 6.86 -4.04 -0.03 1.81 16 6 N -0.37 -6.21 3.65 -60.81 -0.22 -6.43 16 7 C 0.11 1.93 11.25 -16.56 -0.19 1.75 16 8 C -0.28 -5.42 6.13 -105.07 -0.64 -6.06 16 9 C 0.61 12.39 7.78 -12.52 -0.10 12.30 16 10 O -0.58 -12.99 16.56 5.27 0.09 -12.91 16 11 N -0.69 -12.57 3.79 -54.88 -0.21 -12.77 16 12 C 0.15 2.46 2.57 -67.93 -0.17 2.28 16 13 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 14 C -0.16 -2.20 9.48 37.16 0.35 -1.85 16 15 C -0.13 -1.98 4.43 -26.73 -0.12 -2.10 16 16 C 0.17 3.11 2.89 -67.93 -0.20 2.92 16 17 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 18 C -0.16 -2.77 9.49 37.16 0.35 -2.42 16 19 N -0.71 -15.72 3.84 -53.42 -0.21 -15.92 16 20 C -0.23 -5.81 9.93 -15.06 -0.15 -5.96 16 21 H 0.06 1.71 7.83 -52.49 -0.41 1.29 16 22 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 23 N -0.93 -23.96 10.90 55.49 0.60 -23.35 16 24 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.14 2.80 10.13 -16.98 -0.17 2.63 16 29 N -0.31 -5.96 12.33 30.86 0.38 -5.58 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.05 8.06 -51.93 -0.42 0.63 16 39 H 0.18 2.58 8.06 -52.49 -0.42 2.16 16 40 H 0.40 7.28 5.46 -40.82 -0.22 7.06 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.38 8.40 5.70 -40.82 -0.23 8.17 16 50 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 51 H 0.20 3.90 6.78 -52.49 -0.36 3.54 16 LS Contribution 417.92 15.07 6.30 6.30 Total: -1.00 -29.94 417.92 -7.73 -37.67 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -8.78 Total: 15.15 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.30 Total: 6.07 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: 0.35 Total: -64.06 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.28 Total: -18.30 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -29.94 -7.73 -37.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135785125.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.172 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds