Wall clock time and date at job start Tue Mar 31 2020 22:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47182 * 2 1 4 4 C 1.42901 * 113.99939 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46910 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.46965 * 180.02562 * 5 4 3 7 7 C 1.34256 * 125.75782 * 125.31987 * 6 5 4 8 8 C 1.38047 * 107.42211 * 180.14308 * 7 6 5 9 9 C 1.47425 * 126.42093 * 179.86491 * 8 7 6 10 10 O 1.21604 * 119.99770 * 359.71909 * 9 8 7 11 11 N 1.34770 * 120.00199 * 179.71071 * 9 8 7 12 12 C 1.46500 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46596 * 325.00243 * 12 11 9 14 14 C 1.53006 * 109.47249 * 84.99846 * 12 11 9 15 15 C 1.52997 * 109.47473 * 205.00145 * 12 11 9 16 16 C 1.53001 * 109.47049 * 64.99864 * 15 12 11 17 17 H 1.08995 * 109.47139 * 55.00312 * 16 15 12 18 18 C 1.52997 * 109.46947 * 175.00112 * 16 15 12 19 19 N 1.46503 * 109.46866 * 295.00204 * 16 15 12 20 20 C 1.36937 * 119.99616 * 155.00576 * 19 16 15 21 21 H 1.08001 * 120.00266 * 359.97438 * 20 19 16 22 22 C 1.38819 * 119.99577 * 180.02562 * 20 19 16 23 23 N 1.31614 * 120.00083 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99795 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47467 * 89.99429 * 24 22 20 26 26 H 1.48494 * 109.47236 * 209.99914 * 24 22 20 27 27 H 1.48509 * 109.47019 * 329.99755 * 24 22 20 28 28 C 1.41296 * 107.16387 * 359.60387 * 8 7 6 29 29 N 1.30444 * 108.02554 * 0.24429 * 28 8 7 30 30 H 1.08993 * 109.47092 * 59.99575 * 1 2 3 31 31 H 1.08997 * 109.47220 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46860 * 299.99708 * 1 2 3 33 33 H 1.09004 * 109.46860 * 240.00292 * 2 1 3 34 34 H 1.09003 * 109.46980 * 120.00340 * 2 1 3 35 35 H 1.08999 * 109.46862 * 60.00566 * 4 3 2 36 36 H 1.08993 * 109.47526 * 300.00200 * 4 3 2 37 37 H 1.08993 * 109.47377 * 60.00104 * 5 4 3 38 38 H 1.09000 * 109.47118 * 299.99608 * 5 4 3 39 39 H 1.08000 * 126.29415 * 359.97438 * 7 6 5 40 40 H 0.97005 * 120.00370 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.47002 * 60.00085 * 14 12 11 42 42 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 43 43 H 1.09000 * 109.47050 * 300.00351 * 14 12 11 44 44 H 1.08998 * 109.47192 * 185.00019 * 15 12 11 45 45 H 1.08998 * 109.46934 * 304.99865 * 15 12 11 46 46 H 1.09000 * 109.47226 * 180.02562 * 18 16 15 47 47 H 1.09000 * 109.47551 * 300.00236 * 18 16 15 48 48 H 1.09004 * 109.47081 * 60.00290 * 18 16 15 49 49 H 0.97002 * 120.00011 * 334.99563 * 19 16 15 50 50 H 0.97000 * 119.99717 * 180.02562 * 23 22 20 51 51 H 1.08002 * 125.98883 * 180.20417 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 7 5.2858 3.0540 0.0012 7 6 6.0182 3.7442 -0.8875 8 6 7.3445 3.5945 -0.5352 9 6 8.5062 4.1769 -1.2315 10 8 8.3404 4.8617 -2.2226 11 7 9.7518 3.9505 -0.7695 12 6 10.9061 4.5297 -1.4610 13 1 10.7151 4.5480 -2.5340 14 6 11.1377 5.9567 -0.9598 15 6 12.1481 3.6821 -1.1784 16 6 11.9661 2.2912 -1.7896 17 1 11.7382 2.3878 -2.8510 18 6 13.2550 1.4854 -1.6160 19 7 10.8642 1.6015 -1.1141 20 6 10.1768 0.6105 -1.7627 21 1 10.4467 0.3377 -2.7723 22 6 9.1322 -0.0427 -1.1229 23 7 8.8029 0.2901 0.1071 24 14 8.1940 -1.3940 -2.0079 25 1 8.8448 -2.7026 -1.7446 26 1 6.7939 -1.4293 -1.5145 27 1 8.1976 -1.1244 -3.4683 28 6 7.3798 2.7836 0.6213 29 7 6.1524 2.4684 0.9309 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.8340 0.9765 -0.8892 36 1 3.8334 0.9767 0.8907 37 1 3.4223 3.4216 0.8911 38 1 3.4230 3.4221 -0.8889 39 1 5.6395 4.3101 -1.7258 40 1 9.8841 3.4040 0.0210 41 1 11.3286 5.9384 0.1132 42 1 11.9963 6.3877 -1.4747 43 1 10.2529 6.5606 -1.1612 44 1 13.0227 4.1608 -1.6188 45 1 12.2879 3.5902 -0.1014 46 1 13.1256 0.4947 -2.0517 47 1 14.0750 1.9986 -2.1184 48 1 13.4830 1.3888 -0.5544 49 1 10.6216 1.8467 -0.2075 50 1 8.0733 -0.1666 0.5543 51 1 8.2674 2.4776 1.1551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135785125.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:37 Heat of formation + Delta-G solvation = -15.716584 kcal Electronic energy + Delta-G solvation = -30763.989818 eV Core-core repulsion = 26699.950267 eV Total energy + Delta-G solvation = -4064.039551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16681 -40.28329 -39.20334 -38.12102 -35.66025 -35.03977 -33.90409 -32.41655 -32.03720 -30.98363 -30.19251 -29.17929 -27.52454 -25.49974 -24.77140 -23.98448 -23.75833 -21.94753 -21.68404 -21.32098 -20.66219 -19.01237 -18.77292 -17.79898 -17.50828 -17.14339 -16.58793 -16.51178 -16.31725 -15.73512 -15.60270 -15.46600 -15.31134 -14.87046 -14.74416 -14.59636 -14.23640 -14.06529 -13.60053 -13.50514 -13.35092 -13.30624 -13.23113 -13.09849 -12.91234 -12.86422 -12.74929 -12.59593 -12.28972 -12.22788 -12.21167 -12.14307 -11.77370 -11.64019 -11.51858 -11.33767 -10.83480 -10.78722 -10.61995 -10.35513 -9.81081 -9.39975 -8.71187 -7.79208 -4.97397 0.67704 1.35267 1.39928 1.44156 1.47222 1.52780 2.57435 2.60462 2.63565 2.84923 3.56110 3.56486 3.79429 3.86647 3.93862 4.01275 4.06118 4.12630 4.17182 4.25246 4.26450 4.38320 4.39350 4.45340 4.50079 4.54605 4.64516 4.74645 4.76815 4.81957 4.90133 4.93809 4.95342 4.96193 5.02827 5.15900 5.20090 5.20575 5.24700 5.45036 5.49119 5.65619 5.68457 5.71853 5.92243 5.93448 6.04548 6.43038 6.74320 6.92532 7.53400 7.60348 8.25734 8.53846 9.40701 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012099 B = 0.003615 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.767537 B = 7743.462262 C = 9481.869945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.393 6.393 4 C 0.061 3.939 5 C 0.138 3.862 6 N -0.366 5.366 7 C 0.120 3.880 8 C -0.306 4.306 9 C 0.601 3.399 10 O -0.607 6.607 11 N -0.688 5.688 12 C 0.148 3.852 13 H 0.055 0.945 14 C -0.151 4.151 15 C -0.119 4.119 16 C 0.162 3.838 17 H 0.027 0.973 18 C -0.153 4.153 19 N -0.716 5.716 20 C -0.225 4.225 21 H 0.051 0.949 22 C -0.039 4.039 23 N -0.922 5.922 24 Si 0.931 3.069 25 H -0.295 1.295 26 H -0.307 1.307 27 H -0.291 1.291 28 C 0.139 3.861 29 N -0.330 5.330 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.204 0.796 40 H 0.402 0.598 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.027 0.973 47 H 0.067 0.933 48 H 0.048 0.952 49 H 0.375 0.625 50 H 0.245 0.755 51 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 7.565 2.233 10.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 O -0.312 6.312 4 C -0.017 4.017 5 C 0.018 3.982 6 N -0.146 5.146 7 C -0.031 4.031 8 C -0.321 4.321 9 C 0.390 3.610 10 O -0.492 6.492 11 N -0.338 5.338 12 C 0.043 3.957 13 H 0.073 0.927 14 C -0.209 4.209 15 C -0.158 4.158 16 C 0.053 3.947 17 H 0.045 0.955 18 C -0.213 4.213 19 N -0.359 5.359 20 C -0.358 4.358 21 H 0.069 0.931 22 C -0.234 4.234 23 N -0.572 5.572 24 Si 0.765 3.235 25 H -0.223 1.223 26 H -0.235 1.235 27 H -0.218 1.218 28 C -0.049 4.049 29 N -0.150 5.150 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.221 0.779 40 H 0.240 0.760 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.126 0.874 45 H 0.095 0.905 46 H 0.046 0.954 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.210 0.790 50 H 0.055 0.945 51 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.425 7.411 2.257 10.731 hybrid contribution 0.064 -1.549 -0.641 1.677 sum -7.361 5.862 1.616 9.548 Atomic orbital electron populations 1.21743 0.91459 1.03633 1.03263 1.22726 0.97182 0.82457 1.00508 1.87736 1.19514 1.28340 1.95599 1.22434 0.81829 0.96822 1.00628 1.21602 0.73066 0.96419 1.07112 1.48449 1.07144 1.37942 1.21028 1.23163 0.90694 0.94826 0.94441 1.20365 0.93757 1.13875 1.04104 1.17290 0.83201 0.78222 0.82301 1.90629 1.86834 1.43405 1.28300 1.45755 1.04780 1.51841 1.31448 1.20914 0.85188 0.93158 0.96433 0.92663 1.22105 1.01844 0.94862 1.02125 1.22119 0.97078 0.94316 1.02241 1.20480 0.87890 0.91207 0.95075 0.95472 1.22271 0.98265 0.99744 1.01026 1.42434 1.36448 1.41413 1.15592 1.19167 1.09647 1.10296 0.96668 0.93143 1.24785 1.00093 1.01300 0.97207 1.69519 1.31727 1.44456 1.11518 0.85789 0.78131 0.81668 0.77880 1.22326 1.23466 1.21775 1.24001 0.95343 0.91347 0.94204 1.77088 1.00997 1.21821 1.15086 0.91671 0.89168 0.91550 0.93477 0.93078 0.94432 0.93156 0.87243 0.85058 0.77927 0.76042 0.91411 0.89674 0.94235 0.87435 0.90518 0.95390 0.91384 0.93298 0.78984 0.94547 0.79649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.05 1.00 6.66 71.98 0.48 1.48 16 3 O -0.39 -9.71 10.34 -148.98 -1.54 -11.26 16 4 C 0.06 1.66 6.11 71.98 0.44 2.10 16 5 C 0.14 3.34 6.86 86.38 0.59 3.93 16 6 N -0.37 -11.86 3.65 -346.31 -1.26 -13.12 16 7 C 0.12 4.07 11.25 84.28 0.95 5.02 16 8 C -0.31 -12.07 6.13 -20.15 -0.12 -12.20 16 9 C 0.60 24.77 7.78 86.66 0.67 25.44 16 10 O -0.61 -27.63 16.56 -4.04 -0.07 -27.69 16 11 N -0.69 -24.90 3.79 -445.81 -1.69 -26.59 16 12 C 0.15 4.60 2.57 44.99 0.12 4.71 16 13 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 14 C -0.15 -3.77 9.48 71.98 0.68 -3.09 16 15 C -0.12 -3.24 4.43 30.59 0.14 -3.10 16 16 C 0.16 5.77 2.89 44.99 0.13 5.90 16 17 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 18 C -0.15 -4.90 9.49 71.98 0.68 -4.22 16 19 N -0.72 -31.47 3.84 -322.93 -1.24 -32.71 16 20 C -0.23 -11.71 9.93 84.04 0.83 -10.87 16 21 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 22 C -0.04 -2.07 5.50 84.86 0.47 -1.60 16 23 N -0.92 -48.40 10.90 21.65 0.24 -48.17 16 24 Si 0.93 46.23 29.55 68.60 2.03 48.26 16 25 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 26 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 27 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 28 C 0.14 5.55 10.13 85.65 0.87 6.41 16 29 N -0.33 -12.79 12.33 -56.27 -0.69 -13.48 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.13 2.38 8.06 -2.39 -0.02 2.36 16 39 H 0.20 5.61 8.06 -2.91 -0.02 5.59 16 40 H 0.40 14.58 5.46 -92.70 -0.51 14.07 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.11 2.23 8.14 -2.39 -0.02 2.22 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 49 H 0.38 16.70 5.70 -92.71 -0.53 16.17 16 50 H 0.24 13.26 8.31 -92.71 -0.77 12.49 16 51 H 0.19 7.64 6.78 -2.91 -0.02 7.62 16 Total: -1.00 -65.76 417.92 3.31 -62.45 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: -0.12 Total: 43.86 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 7.67 Total: 18.47 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -4.65 Total: -134.08 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -1.61 Total: -38.95 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -65.76 3.31 -62.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135785125.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.729 kcal (2) G-P(sol) polarization free energy of solvation -65.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds