Wall clock time and date at job start Tue Mar 31 2020 22:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47271 * 2 1 4 4 C 1.42901 * 114.00103 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47015 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.46890 * 180.02562 * 5 4 3 7 7 C 1.34258 * 125.75467 * 124.99821 * 6 5 4 8 8 C 1.38043 * 107.41286 * 180.02562 * 7 6 5 9 9 C 1.47430 * 126.40981 * 179.97438 * 8 7 6 10 10 O 1.21606 * 120.00005 * 354.89127 * 9 8 7 11 11 N 1.34778 * 120.00000 * 174.89970 * 9 8 7 12 12 C 1.46502 * 119.99977 * 184.69270 * 11 9 8 13 13 H 1.09006 * 109.47050 * 31.71682 * 12 11 9 14 14 C 1.52997 * 109.47450 * 271.71442 * 12 11 9 15 15 C 1.52997 * 109.47091 * 151.71038 * 12 11 9 16 16 C 1.53000 * 109.47611 * 294.80203 * 15 12 11 17 17 H 1.09007 * 109.46875 * 54.12280 * 16 15 12 18 18 C 1.53003 * 109.46973 * 294.12330 * 16 15 12 19 19 N 1.46500 * 109.47522 * 174.12119 * 16 15 12 20 20 C 1.36925 * 120.00133 * 208.23004 * 19 16 15 21 21 H 1.08004 * 120.00602 * 4.98601 * 20 19 16 22 22 C 1.38813 * 120.00194 * 184.98251 * 20 19 16 23 23 N 1.31623 * 120.00591 * 184.66652 * 22 20 19 24 24 Si 1.86803 * 120.00015 * 4.66305 * 22 20 19 25 25 H 1.48496 * 109.47018 * 94.15630 * 24 22 20 26 26 H 1.48498 * 109.47329 * 214.16170 * 24 22 20 27 27 H 1.48507 * 109.46736 * 334.16359 * 24 22 20 28 28 C 1.41286 * 107.17685 * 0.22615 * 8 7 6 29 29 N 1.30452 * 108.01777 * 359.61695 * 28 8 7 30 30 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47111 * 299.99785 * 1 2 3 32 32 H 1.08995 * 109.47462 * 59.99482 * 1 2 3 33 33 H 1.09000 * 109.47111 * 240.00215 * 2 1 3 34 34 H 1.08995 * 109.47462 * 120.00518 * 2 1 3 35 35 H 1.08992 * 109.47272 * 60.00198 * 4 3 2 36 36 H 1.09006 * 109.47173 * 300.00273 * 4 3 2 37 37 H 1.08992 * 109.47404 * 59.99709 * 5 4 3 38 38 H 1.08997 * 109.46727 * 299.99768 * 5 4 3 39 39 H 1.08001 * 126.29159 * 359.97438 * 7 6 5 40 40 H 0.97000 * 119.99886 * 4.68947 * 11 9 8 41 41 H 1.09006 * 109.46841 * 300.00570 * 14 12 11 42 42 H 1.08994 * 109.47360 * 180.02562 * 14 12 11 43 43 H 1.08998 * 109.47215 * 59.99615 * 14 12 11 44 44 H 1.09006 * 109.46908 * 54.80059 * 15 12 11 45 45 H 1.09003 * 109.47342 * 174.79822 * 15 12 11 46 46 H 1.09000 * 109.46899 * 179.97438 * 18 16 15 47 47 H 1.08995 * 109.47307 * 300.00120 * 18 16 15 48 48 H 1.09001 * 109.46591 * 60.00221 * 18 16 15 49 49 H 0.97002 * 119.99187 * 28.23761 * 19 16 15 50 50 H 0.96995 * 120.00646 * 180.02562 * 23 22 20 51 51 H 1.07999 * 125.99188 * 179.73450 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 7 5.2858 3.0540 -0.0011 7 6 6.0178 3.7395 -0.8938 8 6 7.3440 3.5938 -0.5396 9 6 8.5052 4.1753 -1.2376 10 8 8.3471 4.7811 -2.2801 11 7 9.7419 4.0351 -0.7204 12 6 10.8818 4.6990 -1.3576 13 1 10.5508 5.6325 -1.8127 14 6 11.4666 3.7850 -2.4363 15 6 11.9523 4.9960 -0.3056 16 6 11.4095 6.0115 0.7019 17 1 10.4678 5.6475 1.1131 18 6 11.1758 7.3510 0.0004 19 7 12.3789 6.1903 1.7856 20 6 11.9500 6.5489 3.0356 21 1 10.8927 6.6215 3.2437 22 6 12.8742 6.8192 4.0354 23 7 12.4637 7.0740 5.2598 24 14 14.7006 6.8213 3.6435 25 1 15.1381 8.2054 3.3305 26 1 15.4591 6.3155 4.8156 27 1 14.9565 5.9447 2.4724 28 6 7.3807 2.7785 0.6137 29 7 6.1532 2.4681 0.9277 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8333 0.9768 -0.8908 36 1 3.8341 0.9763 0.8892 37 1 3.4230 3.4214 0.8905 38 1 3.4222 3.4224 -0.8894 39 1 5.6387 4.3010 -1.7349 40 1 9.8771 3.4948 0.0737 41 1 11.7976 2.8515 -1.9812 42 1 12.3150 4.2788 -2.9101 43 1 10.7040 3.5734 -3.1858 44 1 12.2168 4.0748 0.2137 45 1 12.8372 5.4052 -0.7931 46 1 10.7887 8.0743 0.7180 47 1 12.1173 7.7148 -0.4109 48 1 10.4545 7.2178 -0.8059 49 1 13.3246 6.0548 1.6176 50 1 13.1094 7.2632 5.9584 51 1 8.2691 2.4683 1.1436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135785126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:41 Heat of formation + Delta-G solvation = -27.471777 kcal Electronic energy + Delta-G solvation = -28874.027365 eV Core-core repulsion = 24809.478071 eV Total energy + Delta-G solvation = -4064.549295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.42638 -40.46914 -39.17396 -38.30265 -36.17566 -35.14851 -34.01862 -32.55688 -32.20266 -31.26102 -30.65250 -29.34040 -27.57746 -25.54916 -24.80428 -24.12034 -23.73533 -22.35178 -21.70128 -21.31334 -20.98632 -19.66094 -18.91665 -17.83436 -17.48955 -17.14467 -16.75487 -16.54167 -16.40590 -16.08077 -15.70815 -15.55665 -15.24745 -14.98522 -14.92940 -14.76334 -14.57670 -14.36268 -13.89939 -13.79747 -13.40919 -13.34208 -13.31858 -13.24769 -12.94625 -12.94002 -12.81783 -12.66022 -12.31300 -12.19587 -12.17390 -12.00653 -11.91313 -11.81952 -11.53166 -11.42463 -10.97263 -10.83719 -10.71687 -10.64872 -10.06214 -9.64492 -9.27320 -7.97978 -5.30591 0.51117 1.14473 1.18576 1.39807 1.45389 1.52045 2.36627 2.52411 2.54338 2.62715 3.33507 3.46388 3.52371 3.78320 3.81321 3.86222 4.05176 4.11580 4.11747 4.17305 4.21404 4.25888 4.29025 4.34921 4.44928 4.51544 4.57138 4.62611 4.64104 4.70024 4.73363 4.84202 4.89305 4.97249 5.00041 5.01726 5.10424 5.17283 5.24846 5.37318 5.38870 5.44102 5.54739 5.71622 5.77622 5.83245 6.06155 6.26286 6.46479 6.70792 7.13947 7.37121 7.90669 8.11131 9.23736 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.002074 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.468078 B =13496.230170 C =14891.443731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.401 6.401 4 C 0.060 3.940 5 C 0.130 3.870 6 N -0.358 5.358 7 C 0.138 3.862 8 C -0.312 4.312 9 C 0.597 3.403 10 O -0.588 6.588 11 N -0.711 5.711 12 C 0.149 3.851 13 H 0.078 0.922 14 C -0.153 4.153 15 C -0.123 4.123 16 C 0.171 3.829 17 H 0.043 0.957 18 C -0.160 4.160 19 N -0.750 5.750 20 C -0.223 4.223 21 H 0.051 0.949 22 C -0.069 4.069 23 N -0.987 5.987 24 Si 0.959 3.041 25 H -0.287 1.287 26 H -0.299 1.299 27 H -0.243 1.243 28 C 0.087 3.913 29 N -0.321 5.321 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.211 0.789 40 H 0.408 0.592 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.025 0.975 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.367 0.633 50 H 0.256 0.744 51 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.579 -15.803 -17.918 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.321 6.321 4 C -0.017 4.017 5 C 0.010 3.990 6 N -0.138 5.138 7 C -0.014 4.014 8 C -0.327 4.327 9 C 0.386 3.614 10 O -0.470 6.470 11 N -0.362 5.362 12 C 0.045 3.955 13 H 0.096 0.904 14 C -0.212 4.212 15 C -0.161 4.161 16 C 0.064 3.936 17 H 0.061 0.939 18 C -0.220 4.220 19 N -0.394 5.394 20 C -0.354 4.354 21 H 0.069 0.931 22 C -0.260 4.260 23 N -0.638 5.638 24 Si 0.787 3.213 25 H -0.214 1.214 26 H -0.226 1.226 27 H -0.168 1.168 28 C -0.101 4.101 29 N -0.141 5.141 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.153 0.847 39 H 0.228 0.772 40 H 0.244 0.756 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.201 0.799 50 H 0.064 0.936 51 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -18.887 -15.824 -17.644 30.306 hybrid contribution 1.739 0.381 0.459 1.838 sum -17.148 -15.443 -17.185 28.773 Atomic orbital electron populations 1.21771 0.92460 1.03521 1.02944 1.22690 0.96524 0.82257 1.00972 1.87768 1.20002 1.28623 1.95670 1.22468 0.81833 0.95858 1.01569 1.21725 0.72522 0.97582 1.07171 1.48505 1.07391 1.37721 1.20165 1.23350 0.90420 0.93460 0.94157 1.20309 0.93792 1.14478 1.04129 1.17373 0.82601 0.78175 0.83243 1.90723 1.86303 1.45219 1.24751 1.45838 1.06434 1.52107 1.31779 1.20955 0.85109 0.96423 0.93046 0.90354 1.22094 1.01034 1.00110 0.97918 1.22111 0.98394 0.99672 0.95967 1.20380 0.92324 0.93577 0.87348 0.93853 1.22352 1.01062 0.99105 0.99439 1.42854 1.05575 1.84154 1.06858 1.18992 0.92693 1.36422 0.87322 0.93124 1.25542 1.02672 1.02506 0.95239 1.69904 1.34778 1.57070 1.02013 0.85339 0.80401 0.78048 0.77519 1.21413 1.22561 1.16769 1.24446 0.96347 0.94895 0.94380 1.77152 1.00772 1.22014 1.14169 0.89197 0.92209 0.91864 0.92360 0.92846 0.92366 0.92729 0.88153 0.84654 0.77224 0.75632 0.91396 0.90325 0.93286 0.90321 0.89211 0.95597 0.92581 0.92157 0.79866 0.93554 0.77553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 71.98 0.74 -0.52 16 2 C 0.05 0.57 6.66 71.98 0.48 1.05 16 3 O -0.40 -6.00 10.34 -148.98 -1.54 -7.54 16 4 C 0.06 0.84 6.11 71.98 0.44 1.28 16 5 C 0.13 1.71 6.86 86.38 0.59 2.30 16 6 N -0.36 -6.80 3.65 -346.30 -1.26 -8.06 16 7 C 0.14 2.70 11.25 84.28 0.95 3.65 16 8 C -0.31 -7.35 6.12 -20.15 -0.12 -7.47 16 9 C 0.60 16.12 7.80 86.66 0.68 16.80 16 10 O -0.59 -19.23 16.56 -4.05 -0.07 -19.29 16 11 N -0.71 -16.93 4.40 -445.79 -1.96 -18.89 16 12 C 0.15 3.56 2.47 44.99 0.11 3.67 16 13 H 0.08 2.15 5.77 -2.38 -0.01 2.14 16 14 C -0.15 -3.01 9.51 71.98 0.68 -2.32 16 15 C -0.12 -3.18 4.43 30.59 0.14 -3.05 16 16 C 0.17 6.13 2.92 44.99 0.13 6.26 16 17 H 0.04 1.68 7.52 -2.38 -0.02 1.66 16 18 C -0.16 -5.57 9.29 71.98 0.67 -4.90 16 19 N -0.75 -33.55 4.87 -322.93 -1.57 -35.12 16 20 C -0.22 -12.55 10.41 84.04 0.87 -11.68 16 21 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 22 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 23 N -0.99 -63.46 13.97 21.65 0.30 -63.16 16 24 Si 0.96 45.08 28.00 68.60 1.92 47.00 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.24 -9.91 6.16 99.48 0.61 -9.30 16 28 C 0.09 1.93 11.51 85.65 0.99 2.91 16 29 N -0.32 -7.55 12.33 -56.28 -0.69 -8.24 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.14 1.04 8.06 -2.39 -0.02 1.02 16 39 H 0.21 2.99 8.06 -2.91 -0.02 2.96 16 40 H 0.41 8.43 7.61 -92.71 -0.71 7.73 16 41 H 0.07 1.17 8.14 -2.38 -0.02 1.16 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 46 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.06 1.88 6.49 -2.39 -0.02 1.86 16 49 H 0.37 15.58 5.57 -92.71 -0.52 15.06 16 50 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 51 H 0.21 3.57 7.52 -2.91 -0.02 3.55 16 Total: -1.00 -77.19 420.73 2.54 -74.65 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.39 Total: 34.23 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 7.81 Total: 4.43 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -5.19 Total: -133.48 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -1.61 Total: -26.83 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.92 Total: 47.00 kcal Total: -77.19 2.54 -74.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135785126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.174 kcal (2) G-P(sol) polarization free energy of solvation -77.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds