Wall clock time and date at job start Tue Mar 31 2020 22:00:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42909 * 109.46841 * 2 1
4 4 C 1.42899 * 113.99608 * 179.97438 * 3 2 1
5 5 C 1.52994 * 109.46849 * 179.97438 * 4 3 2
6 6 N 1.46507 * 109.47305 * 179.97438 * 5 4 3
7 7 C 1.34260 * 125.75447 * 125.00053 * 6 5 4
8 8 C 1.38046 * 107.41709 * 180.02562 * 7 6 5
9 9 C 1.47419 * 126.41691 * 179.97438 * 8 7 6
10 10 O 1.21609 * 120.00047 * 359.97438 * 9 8 7
11 11 N 1.34777 * 120.00415 * 180.02562 * 9 8 7
12 12 C 1.46495 * 120.00230 * 180.02562 * 11 9 8
13 13 H 1.09004 * 109.47062 * 324.99175 * 12 11 9
14 14 C 1.52999 * 109.47657 * 84.99077 * 12 11 9
15 15 C 1.53002 * 109.47317 * 204.99663 * 12 11 9
16 16 C 1.53003 * 109.47269 * 64.99221 * 15 12 11
17 17 H 1.09000 * 109.46953 * 305.00936 * 16 15 12
18 18 C 1.52996 * 109.47332 * 185.00423 * 16 15 12
19 19 N 1.46505 * 109.46807 * 65.00478 * 16 15 12
20 20 C 1.36931 * 119.99788 * 205.00000 * 19 16 15
21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16
22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 16
23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19
24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19
25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20
26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20
27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20
28 28 C 1.41291 * 107.16986 * 0.22641 * 8 7 6
29 29 N 1.30453 * 108.02033 * 359.61529 * 28 8 7
30 30 H 1.09002 * 109.46901 * 59.99725 * 1 2 3
31 31 H 1.08999 * 109.46901 * 180.02562 * 1 2 3
32 32 H 1.09003 * 109.46838 * 300.00362 * 1 2 3
33 33 H 1.08997 * 109.47356 * 240.00080 * 2 1 3
34 34 H 1.08997 * 109.46906 * 119.99341 * 2 1 3
35 35 H 1.09004 * 109.47235 * 59.99907 * 4 3 2
36 36 H 1.08997 * 109.47039 * 299.99801 * 4 3 2
37 37 H 1.09002 * 109.47446 * 60.00111 * 5 4 3
38 38 H 1.08997 * 109.47483 * 299.99952 * 5 4 3
39 39 H 1.07997 * 126.29401 * 359.97438 * 7 6 5
40 40 H 0.97000 * 119.99724 * 359.97438 * 11 9 8
41 41 H 1.09005 * 109.46583 * 60.00443 * 14 12 11
42 42 H 1.09001 * 109.47265 * 179.97438 * 14 12 11
43 43 H 1.08991 * 109.47415 * 300.00577 * 14 12 11
44 44 H 1.09000 * 109.46766 * 304.99737 * 15 12 11
45 45 H 1.08992 * 109.47398 * 184.99831 * 15 12 11
46 46 H 1.09002 * 109.46807 * 300.00318 * 18 16 15
47 47 H 1.08998 * 109.47019 * 59.99816 * 18 16 15
48 48 H 1.08998 * 109.47099 * 180.02562 * 18 16 15
49 49 H 0.97000 * 119.99792 * 24.99795 * 19 16 15
50 50 H 0.97005 * 119.99715 * 179.97438 * 23 22 20
51 51 H 1.08000 * 125.99150 * 179.74556 * 28 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 6 3.4309 1.4602 0.0006
5 6 3.8253 2.9384 -0.0001
6 7 5.2858 3.0542 0.0011
7 6 6.0193 3.7385 -0.8912
8 6 7.3449 3.5935 -0.5345
9 6 8.5072 4.1740 -1.2312
10 8 8.3424 4.8564 -2.2242
11 7 9.7526 3.9475 -0.7683
12 6 10.9075 4.5249 -1.4604
13 1 10.7171 4.5414 -2.5335
14 6 11.1398 5.9525 -0.9616
15 6 12.1489 3.6769 -1.1758
16 6 11.9663 2.2851 -1.7844
17 1 11.0429 1.8432 -1.4102
18 6 13.1507 1.3985 -1.3944
19 7 11.8986 2.3954 -3.2437
20 6 11.2510 1.4347 -3.9736
21 1 10.7897 0.5959 -3.4735
22 6 11.1819 1.5422 -5.3559
23 7 11.7436 2.5647 -5.9653
24 14 10.2917 0.2358 -6.3510
25 1 8.8633 0.6138 -6.4987
26 1 10.9160 0.1254 -7.6938
27 1 10.3882 -1.0706 -5.6514
28 6 7.3796 2.7797 0.6199
29 7 6.1515 2.4697 0.9322
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.8934 -0.5138 -0.8900
34 1 1.8933 -0.5137 0.8900
35 1 3.8340 0.9765 -0.8892
36 1 3.8332 0.9768 0.8908
37 1 3.4222 3.4225 0.8894
38 1 3.4230 3.4214 -0.8905
39 1 5.6417 4.2988 -1.7338
40 1 9.8841 3.4029 0.0235
41 1 11.3303 5.9359 0.1115
42 1 11.9994 6.3819 -1.4762
43 1 10.2555 6.5566 -1.1644
44 1 12.2881 3.5869 -0.0984
45 1 13.0239 4.1543 -1.6165
46 1 14.0741 1.8405 -1.7686
47 1 13.2011 1.3165 -0.3087
48 1 13.0208 0.4071 -1.8284
49 1 12.3126 3.1489 -3.6929
50 1 11.6956 2.6396 -6.9312
51 1 8.2671 2.4704 1.1520
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001135785127.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:00:46
Heat of formation + Delta-G solvation = -31.096874 kcal
Electronic energy + Delta-G solvation = -29384.716348 eV
Core-core repulsion = 25320.009858 eV
Total energy + Delta-G solvation = -4064.706491 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.54 seconds
Orbital eigenvalues (eV)
-42.41685 -40.38686 -39.18222 -38.17119 -35.96853 -35.14186 -33.94843 -32.47058
-32.10346 -31.13451 -30.37791 -29.33362 -27.53630 -25.64656 -24.85614 -24.13784
-23.74777 -22.21536 -21.65622 -21.17359 -20.99295 -19.31191 -18.89834 -17.84416
-17.49680 -17.14130 -16.67856 -16.60455 -16.38369 -15.76853 -15.68766 -15.59942
-15.39748 -15.01648 -14.83078 -14.69004 -14.46742 -14.15456 -13.81853 -13.54849
-13.34967 -13.32908 -13.27369 -13.10928 -12.94993 -12.91247 -12.77059 -12.61353
-12.33935 -12.19696 -12.18852 -12.16001 -11.94400 -11.76261 -11.51109 -11.36101
-10.89487 -10.80380 -10.72888 -10.63649 -10.01623 -9.61794 -8.90734 -7.89070
-5.13658 0.49690 1.14118 1.20968 1.42642 1.45334 1.52216 2.43174
2.58025 2.58351 2.62118 3.45264 3.47176 3.77492 3.80927 3.83919
3.91819 4.05804 4.10503 4.14513 4.16619 4.21568 4.25267 4.33597
4.43678 4.48007 4.55907 4.61168 4.62613 4.72387 4.79528 4.83116
4.85272 4.90000 4.98815 5.00591 5.10341 5.15447 5.23406 5.30861
5.38381 5.43472 5.49325 5.55962 5.68372 5.74781 5.77323 6.04013
6.34391 6.46275 6.80025 7.39933 7.49523 8.21366 8.40689 9.34838
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.009096 B = 0.002795 C = 0.002352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3077.416028 B =10015.181062 C =11899.557236
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.051 3.949
3 O -0.399 6.399
4 C 0.059 3.941
5 C 0.132 3.868
6 N -0.358 5.358
7 C 0.130 3.870
8 C -0.308 4.308
9 C 0.588 3.412
10 O -0.598 6.598
11 N -0.700 5.700
12 C 0.149 3.851
13 H 0.046 0.954
14 C -0.151 4.151
15 C -0.117 4.117
16 C 0.163 3.837
17 H 0.044 0.956
18 C -0.156 4.156
19 N -0.731 5.731
20 C -0.221 4.221
21 H 0.068 0.932
22 C -0.080 4.080
23 N -0.969 5.969
24 Si 0.960 3.040
25 H -0.296 1.296
26 H -0.296 1.296
27 H -0.269 1.269
28 C 0.093 3.907
29 N -0.314 5.314
30 H 0.060 0.940
31 H 0.089 0.911
32 H 0.063 0.937
33 H 0.052 0.948
34 H 0.057 0.943
35 H 0.048 0.952
36 H 0.061 0.939
37 H 0.110 0.890
38 H 0.128 0.872
39 H 0.199 0.801
40 H 0.410 0.590
41 H 0.082 0.918
42 H 0.068 0.932
43 H 0.036 0.964
44 H 0.108 0.892
45 H 0.075 0.925
46 H 0.041 0.959
47 H 0.077 0.923
48 H 0.028 0.972
49 H 0.370 0.630
50 H 0.247 0.753
51 H 0.220 0.780
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.550 -0.352 20.464 25.704
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.025 4.025
3 O -0.319 6.319
4 C -0.019 4.019
5 C 0.012 3.988
6 N -0.137 5.137
7 C -0.022 4.022
8 C -0.323 4.323
9 C 0.377 3.623
10 O -0.480 6.480
11 N -0.350 5.350
12 C 0.044 3.956
13 H 0.064 0.936
14 C -0.209 4.209
15 C -0.155 4.155
16 C 0.055 3.945
17 H 0.062 0.938
18 C -0.216 4.216
19 N -0.371 5.371
20 C -0.353 4.353
21 H 0.086 0.914
22 C -0.272 4.272
23 N -0.621 5.621
24 Si 0.790 3.210
25 H -0.224 1.224
26 H -0.222 1.222
27 H -0.193 1.193
28 C -0.094 4.094
29 N -0.134 5.134
30 H 0.079 0.921
31 H 0.108 0.892
32 H 0.082 0.918
33 H 0.070 0.930
34 H 0.075 0.925
35 H 0.067 0.933
36 H 0.079 0.921
37 H 0.128 0.872
38 H 0.146 0.854
39 H 0.216 0.784
40 H 0.247 0.753
41 H 0.101 0.899
42 H 0.087 0.913
43 H 0.056 0.944
44 H 0.126 0.874
45 H 0.094 0.906
46 H 0.060 0.940
47 H 0.096 0.904
48 H 0.047 0.953
49 H 0.201 0.799
50 H 0.055 0.945
51 H 0.237 0.763
Dipole moment (debyes) X Y Z Total
from point charges -16.805 -0.552 20.593 26.586
hybrid contribution 0.547 -0.407 -1.771 1.898
sum -16.258 -0.959 18.822 24.890
Atomic orbital electron populations
1.21768 0.92293 1.03528 1.03005 1.22700 0.96641 0.82295 1.00905
1.87761 1.19887 1.28554 1.95663 1.22482 0.81897 0.96059 1.01454
1.21712 0.72522 0.97368 1.07224 1.48456 1.07376 1.37756 1.20156
1.23243 0.90845 0.93971 0.94095 1.20280 0.93250 1.14378 1.04369
1.17577 0.83278 0.78989 0.82449 1.90762 1.86561 1.42597 1.28115
1.45571 1.04712 1.53320 1.31423 1.20803 0.85216 0.93183 0.96422
0.93616 1.22079 1.01294 0.95008 1.02504 1.22073 0.96292 0.94605
1.02573 1.20539 0.96277 0.94549 0.83159 0.93799 1.22304 0.99064
0.99389 1.00800 1.42599 1.65478 1.27081 1.01926 1.19485 1.24987
1.01608 0.89255 0.91371 1.25420 1.03449 1.00384 0.97948 1.69799
1.51662 1.32628 1.07979 0.85322 0.77736 0.79581 0.78323 1.22431
1.22237 1.19344 1.24498 0.96559 0.94192 0.94186 1.77091 1.00653
1.21439 1.14211 0.92089 0.89237 0.91793 0.92973 0.92460 0.93344
0.92105 0.87162 0.85415 0.78391 0.75316 0.89934 0.91304 0.94442
0.87384 0.90643 0.93987 0.90388 0.95313 0.79860 0.94463 0.76342
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16
2 C 0.05 0.67 6.66 71.98 0.48 1.15 16
3 O -0.40 -6.77 10.34 -148.98 -1.54 -8.31 16
4 C 0.06 0.97 6.11 71.98 0.44 1.41 16
5 C 0.13 1.97 6.86 86.38 0.59 2.56 16
6 N -0.36 -7.52 3.65 -346.29 -1.26 -8.78 16
7 C 0.13 3.17 11.25 84.28 0.95 4.12 16
8 C -0.31 -8.48 6.13 -20.15 -0.12 -8.60 16
9 C 0.59 20.33 7.78 86.66 0.67 21.00 16
10 O -0.60 -26.79 16.56 -4.06 -0.07 -26.86 16
11 N -0.70 -20.10 4.44 -445.81 -1.98 -22.08 16
12 C 0.15 4.78 2.52 44.99 0.11 4.89 16
13 H 0.05 2.06 7.05 -2.38 -0.02 2.05 16
14 C -0.15 -4.01 9.48 71.98 0.68 -3.32 16
15 C -0.12 -3.28 4.29 30.60 0.13 -3.15 16
16 C 0.16 5.92 2.84 44.99 0.13 6.05 16
17 H 0.04 1.63 7.56 -2.39 -0.02 1.61 16
18 C -0.16 -5.05 9.49 71.98 0.68 -4.37 16
19 N -0.73 -36.47 4.49 -322.93 -1.45 -37.92 16
20 C -0.22 -12.51 9.93 84.04 0.83 -11.67 16
21 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16
22 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16
23 N -0.97 -61.69 13.06 21.65 0.28 -61.40 16
24 Si 0.96 48.44 29.55 68.60 2.03 50.47 16
25 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16
26 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16
27 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16
28 C 0.09 2.04 11.50 85.65 0.99 3.02 16
29 N -0.31 -7.24 12.33 -56.27 -0.69 -7.93 16
30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16
32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16
33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
35 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16
36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
37 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16
38 H 0.13 1.42 8.06 -2.39 -0.02 1.40 16
39 H 0.20 4.25 8.06 -2.91 -0.02 4.22 16
40 H 0.41 8.48 7.56 -92.71 -0.70 7.77 16
41 H 0.08 1.65 8.14 -2.38 -0.02 1.64 16
42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
43 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16
44 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16
45 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16
46 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
47 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
48 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
49 H 0.37 20.20 7.80 -92.71 -0.72 19.48 16
50 H 0.25 15.36 8.31 -92.70 -0.77 14.59 16
51 H 0.22 3.05 7.50 -2.91 -0.02 3.03 16
Total: -1.00 -80.70 426.37 2.58 -78.12
By element:
Atomic # 1 Polarization: 37.20 SS G_CDS: -0.51 Total: 36.70 kcal
Atomic # 6 Polarization: 0.23 SS G_CDS: 7.78 Total: 8.00 kcal
Atomic # 7 Polarization: -133.02 SS G_CDS: -5.10 Total: -138.12 kcal
Atomic # 8 Polarization: -33.56 SS G_CDS: -1.61 Total: -35.17 kcal
Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.47 kcal
Total: -80.70 2.58 -78.12 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135785127.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.024 kcal
(2) G-P(sol) polarization free energy of solvation -80.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.54 seconds