Wall clock time and date at job start Tue Mar 31 2020 21:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47566 * 2 1 4 4 C 1.36939 * 119.99721 * 84.12236 * 3 2 1 5 5 H 1.07994 * 120.00365 * 33.11472 * 4 3 2 6 6 C 1.38810 * 119.99862 * 212.84879 * 4 3 2 7 7 N 1.31622 * 119.99710 * 19.09419 * 6 4 3 8 8 Si 1.86801 * 120.00125 * 199.10073 * 6 4 3 9 9 H 1.48496 * 109.47376 * 89.99521 * 8 6 4 10 10 H 1.48494 * 109.47149 * 209.99868 * 8 6 4 11 11 H 1.48501 * 109.46947 * 329.99591 * 8 6 4 12 12 C 1.46502 * 120.00216 * 264.12203 * 3 2 1 13 13 H 1.08996 * 109.46848 * 181.49411 * 12 3 2 14 14 C 1.53002 * 109.47002 * 61.49681 * 12 3 2 15 15 C 1.52999 * 109.47007 * 301.49774 * 12 3 2 16 16 N 1.46502 * 109.47088 * 305.00055 * 15 12 3 17 17 C 1.34774 * 119.99908 * 180.02562 * 16 15 12 18 18 O 1.21280 * 119.99801 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00123 * 179.97438 * 17 16 15 20 20 O 1.42893 * 109.47197 * 180.02562 * 19 17 16 21 21 C 1.36236 * 117.00008 * 180.02562 * 20 19 17 22 22 C 1.40112 * 126.05566 * 90.02436 * 21 20 19 23 23 C 1.50698 * 125.81749 * 359.97438 * 22 21 20 24 24 N 1.30863 * 108.35885 * 179.97438 * 22 21 20 25 25 N 1.40084 * 108.32140 * 359.97438 * 24 22 21 26 26 C 1.46500 * 126.07779 * 180.02562 * 25 24 22 27 27 C 1.35594 * 126.04646 * 269.71113 * 21 20 19 28 28 C 1.50698 * 126.21067 * 0.02562 * 27 21 20 29 29 H 1.09003 * 109.47046 * 59.99562 * 1 2 3 30 30 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47368 * 300.00337 * 1 2 3 32 32 H 1.09007 * 109.47266 * 239.99973 * 2 1 3 33 33 H 1.09003 * 109.47046 * 120.00438 * 2 1 3 34 34 H 0.97003 * 119.99246 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46764 * 59.99806 * 14 12 3 36 36 H 1.08994 * 109.46794 * 180.02562 * 14 12 3 37 37 H 1.09005 * 109.47137 * 300.00166 * 14 12 3 38 38 H 1.09005 * 109.46971 * 64.99685 * 15 12 3 39 39 H 1.08998 * 109.47166 * 184.99951 * 15 12 3 40 40 H 0.97001 * 120.00149 * 0.02562 * 16 15 12 41 41 H 1.09005 * 109.46706 * 300.00267 * 19 17 16 42 42 H 1.08998 * 109.47023 * 59.99860 * 19 17 16 43 43 H 1.09007 * 109.46699 * 90.00801 * 23 22 21 44 44 H 1.09005 * 109.46903 * 210.00167 * 23 22 21 45 45 H 1.08991 * 109.47859 * 330.00521 * 23 22 21 46 46 H 1.09002 * 109.47190 * 89.97375 * 26 25 24 47 47 H 1.08990 * 109.47495 * 209.97455 * 26 25 24 48 48 H 1.08999 * 109.46954 * 329.97605 * 26 25 24 49 49 H 1.08993 * 109.47135 * 90.00202 * 28 27 21 50 50 H 1.08998 * 109.46535 * 209.99910 * 28 27 21 51 51 H 1.09000 * 109.46966 * 329.99527 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1322 2.0671 1.1797 5 1 2.3922 1.5420 2.0868 6 6 1.9186 3.4384 1.2086 7 7 1.2565 4.0220 0.2321 8 14 2.5712 4.4556 2.6330 9 1 3.9437 4.9264 2.3173 10 1 1.6845 5.6263 2.8524 11 1 2.6041 3.6225 3.8619 12 6 2.3851 2.0285 -1.2620 13 1 2.7482 3.0364 -1.0613 14 6 1.1584 2.1005 -2.1736 15 6 3.4851 1.2177 -1.9503 16 7 4.6135 1.0473 -1.0316 17 6 5.7049 0.3613 -1.4249 18 8 5.7530 -0.1145 -2.5394 19 6 6.8659 0.1865 -0.4802 20 8 7.8936 -0.5698 -1.1234 21 6 9.0215 -0.8199 -0.4013 22 6 9.2427 -1.9298 0.4247 23 6 8.2709 -3.0555 0.6683 24 7 10.4371 -1.8222 0.9485 25 7 11.0208 -0.6401 0.4750 26 6 12.3555 -0.1407 0.8147 27 6 10.1310 -0.0415 -0.3594 28 6 10.3384 1.2537 -1.1012 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.1076 4.9803 0.2522 35 1 0.3748 2.6781 -1.6832 36 1 1.4314 2.5817 -3.1127 37 1 0.7952 1.0925 -2.3743 38 1 3.0940 0.2397 -2.2307 39 1 3.8201 1.7449 -2.8435 40 1 4.5751 1.4282 -0.1404 41 1 7.2566 1.1647 -0.1997 42 1 6.5312 -0.3408 0.4131 43 1 8.4325 -3.8411 -0.0699 44 1 8.4262 -3.4595 1.6688 45 1 7.2512 -2.6803 0.5823 46 1 13.0820 -0.5317 0.1023 47 1 12.3571 0.9484 0.7744 48 1 12.6206 -0.4675 1.8202 49 1 9.9947 2.0844 -0.4849 50 1 11.3981 1.3798 -1.3227 51 1 9.7724 1.2336 -2.0325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153362779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:19 Heat of formation + Delta-G solvation = 19.653490 kcal Electronic energy + Delta-G solvation = -30339.201543 eV Core-core repulsion = 26276.695753 eV Total energy + Delta-G solvation = -4062.505790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.54139 -39.32884 -37.60375 -36.72867 -34.23510 -33.72585 -31.89571 -31.76440 -30.94286 -29.69728 -28.61813 -28.32048 -26.71066 -25.43246 -24.68592 -23.86901 -21.61499 -20.58601 -19.99699 -19.95341 -19.29938 -17.60799 -17.21140 -16.57370 -16.23808 -15.84857 -15.53504 -15.17170 -14.72643 -14.58274 -14.13336 -14.05733 -13.67892 -13.60257 -13.47080 -13.40266 -13.15740 -12.87426 -12.80944 -12.57721 -12.43863 -12.29839 -12.14469 -11.99583 -11.89324 -11.57210 -11.42104 -11.31411 -11.11924 -11.05744 -10.86450 -10.48569 -10.30525 -9.95982 -9.77558 -9.61484 -9.50292 -9.34668 -9.25396 -8.55996 -8.41699 -8.40099 -6.71677 -5.90777 -3.37360 1.49441 2.10170 2.33130 3.03343 3.28081 3.34647 3.37673 3.38313 4.15232 4.36143 4.39661 4.45962 4.75150 4.80539 4.91109 5.05500 5.15191 5.16977 5.24103 5.24862 5.27051 5.33875 5.39310 5.56078 5.61371 5.67769 5.76695 5.87837 5.89722 6.11131 6.15687 6.23759 6.33553 6.45726 6.51046 6.54316 6.68692 6.69271 6.72211 6.77757 6.99119 7.05733 7.28215 7.44631 7.47073 7.53519 7.58745 7.75970 8.12393 8.40491 8.71913 9.13299 9.75117 10.32550 11.16065 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.002862 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.241460 B = 9780.636540 C =10540.806305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.582 5.582 4 C -0.264 4.264 5 H 0.065 0.935 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.179 3.821 13 H 0.096 0.904 14 C -0.145 4.145 15 C 0.104 3.896 16 N -0.701 5.701 17 C 0.509 3.491 18 O -0.539 6.539 19 C 0.041 3.959 20 O -0.274 6.274 21 C -0.054 4.054 22 C 0.071 3.929 23 C -0.072 4.072 24 N -0.288 5.288 25 N -0.374 5.374 26 C 0.106 3.894 27 C 0.074 3.926 28 C -0.092 4.092 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.254 0.746 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.411 0.589 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.072 0.928 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.785 -5.674 -0.074 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 N -0.304 5.304 4 C -0.393 4.393 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.218 1.218 11 H -0.204 1.204 12 C 0.071 3.929 13 H 0.114 0.886 14 C -0.204 4.204 15 C -0.021 4.021 16 N -0.354 5.354 17 C 0.293 3.707 18 O -0.416 6.416 19 C -0.037 4.037 20 O -0.187 6.187 21 C -0.110 4.110 22 C -0.096 4.096 23 C -0.131 4.131 24 N -0.111 5.111 25 N -0.159 5.159 26 C -0.035 4.035 27 C -0.053 4.053 28 C -0.150 4.150 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.247 0.753 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.109 0.891 49 H 0.100 0.900 50 H 0.090 0.910 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.708 -6.358 -0.276 18.817 hybrid contribution -0.350 1.359 0.915 1.675 sum 17.358 -4.999 0.639 18.075 Atomic orbital electron populations 1.22376 0.99748 0.98289 1.02122 1.20798 0.91942 0.87583 0.98047 1.43966 1.73740 1.09790 1.02881 1.19109 1.41970 0.90172 0.88092 0.91784 1.25121 0.97937 0.98408 0.97304 1.70026 1.39544 1.09967 1.33498 0.86427 0.78502 0.80098 0.82538 1.21446 1.21827 1.20434 1.20460 0.90479 0.96632 0.85286 0.88571 1.22127 1.00736 0.99683 0.97903 1.22132 0.87139 1.00748 0.92100 1.45815 1.15951 1.54454 1.19184 1.20027 0.83504 0.79229 0.87905 1.90685 1.81173 1.48657 1.21081 1.22516 0.88526 0.97018 0.95677 1.86313 1.23074 1.72590 1.36688 1.18005 0.89540 0.97125 1.06279 1.22732 0.93919 0.97621 0.95319 1.20188 0.96130 0.94106 1.02642 1.77345 1.09382 1.01498 1.22900 1.48205 1.14097 1.17869 1.35731 1.21829 0.78971 0.99791 1.02919 1.21316 0.91502 0.96874 0.95655 1.20468 1.03116 0.91019 1.00441 0.93168 0.95418 0.92893 0.94477 0.94603 0.93586 0.90031 0.95098 0.94964 0.92743 0.92713 0.75277 0.90564 0.90206 0.90125 0.90800 0.90188 0.90785 0.89415 0.89067 0.90001 0.90956 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 10.01 37.15 0.37 -2.81 16 2 C 0.14 2.82 5.66 -4.04 -0.02 2.80 16 3 N -0.58 -12.68 1.83 -165.66 -0.30 -12.98 16 4 C -0.26 -6.36 9.34 -15.06 -0.14 -6.50 16 5 H 0.06 1.56 7.90 -52.49 -0.41 1.15 16 6 C 0.01 0.32 4.80 -17.43 -0.08 0.23 16 7 N -0.89 -23.05 10.57 55.49 0.59 -22.46 16 8 Si 0.89 19.85 29.59 -169.99 -5.03 14.82 16 9 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.18 3.72 1.93 -67.93 -0.13 3.59 16 13 H 0.10 2.27 6.14 -51.93 -0.32 1.95 16 14 C -0.15 -2.93 8.19 37.16 0.30 -2.62 16 15 C 0.10 1.96 4.90 -4.04 -0.02 1.94 16 16 N -0.70 -12.36 5.39 -60.29 -0.32 -12.69 16 17 C 0.51 8.96 7.91 -10.99 -0.09 8.87 16 18 O -0.54 -11.42 16.50 -14.35 -0.24 -11.66 16 19 C 0.04 0.60 6.54 36.01 0.24 0.83 16 20 O -0.27 -4.33 9.70 -40.40 -0.39 -4.73 16 21 C -0.05 -0.77 6.15 -39.82 -0.24 -1.01 16 22 C 0.07 0.97 7.22 -82.30 -0.59 0.37 16 23 C -0.07 -0.80 10.44 36.00 0.38 -0.42 16 24 N -0.29 -3.90 12.57 33.72 0.42 -3.48 16 25 N -0.37 -4.22 4.04 -63.59 -0.26 -4.48 16 26 C 0.11 0.66 11.12 59.85 0.67 1.33 16 27 C 0.07 0.88 6.97 -81.75 -0.57 0.31 16 28 C -0.09 -0.79 9.89 36.00 0.36 -0.43 16 29 H 0.05 0.99 6.07 -51.93 -0.32 0.67 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.70 6.46 -51.92 -0.34 0.37 16 33 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 35 H 0.08 1.88 7.24 -51.93 -0.38 1.50 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.03 0.61 6.57 -51.93 -0.34 0.27 16 38 H 0.05 1.05 6.82 -51.93 -0.35 0.70 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.41 7.20 7.97 -40.82 -0.33 6.88 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.35 7.71 -51.93 -0.40 -0.05 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.07 0.44 7.77 -51.93 -0.40 0.04 16 51 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 415.48 15.07 6.26 6.26 Total: -1.00 -31.07 415.48 -7.49 -38.56 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -8.64 Total: 6.36 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 0.42 Total: 6.47 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.13 Total: -56.09 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.63 Total: -16.38 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.07 -7.49 -38.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153362779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.218 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds