Wall clock time and date at job start Tue Mar 31 2020 21:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47566 * 2 1 4 4 C 1.36939 * 119.99721 * 84.12236 * 3 2 1 5 5 H 1.07994 * 120.00365 * 33.11472 * 4 3 2 6 6 C 1.38810 * 119.99862 * 212.84879 * 4 3 2 7 7 N 1.31622 * 119.99710 * 19.09419 * 6 4 3 8 8 Si 1.86801 * 120.00125 * 199.10073 * 6 4 3 9 9 H 1.48496 * 109.47376 * 89.99521 * 8 6 4 10 10 H 1.48494 * 109.47149 * 209.99868 * 8 6 4 11 11 H 1.48501 * 109.46947 * 329.99591 * 8 6 4 12 12 C 1.46502 * 120.00216 * 264.12203 * 3 2 1 13 13 H 1.08996 * 109.46848 * 181.49411 * 12 3 2 14 14 C 1.53002 * 109.47002 * 61.49681 * 12 3 2 15 15 C 1.52999 * 109.47007 * 301.49774 * 12 3 2 16 16 N 1.46502 * 109.47088 * 305.00055 * 15 12 3 17 17 C 1.34774 * 119.99908 * 180.02562 * 16 15 12 18 18 O 1.21280 * 119.99801 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00123 * 179.97438 * 17 16 15 20 20 O 1.42893 * 109.47197 * 180.02562 * 19 17 16 21 21 C 1.36236 * 117.00008 * 180.02562 * 20 19 17 22 22 C 1.40112 * 126.05566 * 90.02436 * 21 20 19 23 23 C 1.50698 * 125.81749 * 359.97438 * 22 21 20 24 24 N 1.30863 * 108.35885 * 179.97438 * 22 21 20 25 25 N 1.40084 * 108.32140 * 359.97438 * 24 22 21 26 26 C 1.46500 * 126.07779 * 180.02562 * 25 24 22 27 27 C 1.35594 * 126.04646 * 269.71113 * 21 20 19 28 28 C 1.50698 * 126.21067 * 0.02562 * 27 21 20 29 29 H 1.09003 * 109.47046 * 59.99562 * 1 2 3 30 30 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47368 * 300.00337 * 1 2 3 32 32 H 1.09007 * 109.47266 * 239.99973 * 2 1 3 33 33 H 1.09003 * 109.47046 * 120.00438 * 2 1 3 34 34 H 0.97003 * 119.99246 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46764 * 59.99806 * 14 12 3 36 36 H 1.08994 * 109.46794 * 180.02562 * 14 12 3 37 37 H 1.09005 * 109.47137 * 300.00166 * 14 12 3 38 38 H 1.09005 * 109.46971 * 64.99685 * 15 12 3 39 39 H 1.08998 * 109.47166 * 184.99951 * 15 12 3 40 40 H 0.97001 * 120.00149 * 0.02562 * 16 15 12 41 41 H 1.09005 * 109.46706 * 300.00267 * 19 17 16 42 42 H 1.08998 * 109.47023 * 59.99860 * 19 17 16 43 43 H 1.09007 * 109.46699 * 90.00801 * 23 22 21 44 44 H 1.09005 * 109.46903 * 210.00167 * 23 22 21 45 45 H 1.08991 * 109.47859 * 330.00521 * 23 22 21 46 46 H 1.09002 * 109.47190 * 89.97375 * 26 25 24 47 47 H 1.08990 * 109.47495 * 209.97455 * 26 25 24 48 48 H 1.08999 * 109.46954 * 329.97605 * 26 25 24 49 49 H 1.08993 * 109.47135 * 90.00202 * 28 27 21 50 50 H 1.08998 * 109.46535 * 209.99910 * 28 27 21 51 51 H 1.09000 * 109.46966 * 329.99527 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1322 2.0671 1.1797 5 1 2.3922 1.5420 2.0868 6 6 1.9186 3.4384 1.2086 7 7 1.2565 4.0220 0.2321 8 14 2.5712 4.4556 2.6330 9 1 3.9437 4.9264 2.3173 10 1 1.6845 5.6263 2.8524 11 1 2.6041 3.6225 3.8619 12 6 2.3851 2.0285 -1.2620 13 1 2.7482 3.0364 -1.0613 14 6 1.1584 2.1005 -2.1736 15 6 3.4851 1.2177 -1.9503 16 7 4.6135 1.0473 -1.0316 17 6 5.7049 0.3613 -1.4249 18 8 5.7530 -0.1145 -2.5394 19 6 6.8659 0.1865 -0.4802 20 8 7.8936 -0.5698 -1.1234 21 6 9.0215 -0.8199 -0.4013 22 6 9.2427 -1.9298 0.4247 23 6 8.2709 -3.0555 0.6683 24 7 10.4371 -1.8222 0.9485 25 7 11.0208 -0.6401 0.4750 26 6 12.3555 -0.1407 0.8147 27 6 10.1310 -0.0415 -0.3594 28 6 10.3384 1.2537 -1.1012 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.1076 4.9803 0.2522 35 1 0.3748 2.6781 -1.6832 36 1 1.4314 2.5817 -3.1127 37 1 0.7952 1.0925 -2.3743 38 1 3.0940 0.2397 -2.2307 39 1 3.8201 1.7449 -2.8435 40 1 4.5751 1.4282 -0.1404 41 1 7.2566 1.1647 -0.1997 42 1 6.5312 -0.3408 0.4131 43 1 8.4325 -3.8411 -0.0699 44 1 8.4262 -3.4595 1.6688 45 1 7.2512 -2.6803 0.5823 46 1 13.0820 -0.5317 0.1023 47 1 12.3571 0.9484 0.7744 48 1 12.6206 -0.4675 1.8202 49 1 9.9947 2.0844 -0.4849 50 1 11.3981 1.3798 -1.3227 51 1 9.7724 1.2336 -2.0325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153362779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:18 Heat of formation + Delta-G solvation = 1.405129 kcal Electronic energy + Delta-G solvation = -30339.992851 eV Core-core repulsion = 26276.695753 eV Total energy + Delta-G solvation = -4063.297098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.44043 -40.73704 -38.89792 -38.23853 -35.29586 -35.04224 -33.70991 -32.68695 -32.40019 -30.46112 -30.09965 -29.78225 -27.62312 -26.53323 -25.92078 -25.54688 -23.25474 -21.58633 -21.35750 -20.97764 -20.80778 -18.87600 -18.60677 -17.98193 -17.26308 -16.91614 -16.75320 -16.49868 -16.33966 -16.09955 -15.46231 -15.24521 -14.99618 -14.71652 -14.39840 -14.32815 -14.19713 -14.03162 -13.87313 -13.80131 -13.58229 -13.44201 -13.25230 -13.19807 -13.04960 -12.97523 -12.91349 -12.81264 -12.75667 -12.60542 -12.17015 -12.08770 -12.05618 -11.73094 -11.26884 -11.20989 -10.83814 -10.77968 -10.42458 -10.10515 -9.92346 -9.32840 -8.52398 -7.79155 -5.26676 0.61519 1.21385 1.48327 1.51394 1.56473 1.61632 1.64158 2.11269 2.57709 3.12838 3.35595 3.59619 3.61297 3.67976 3.87605 3.97511 4.18063 4.20062 4.28460 4.32561 4.39860 4.45618 4.49793 4.56107 4.60945 4.66424 4.72134 4.76580 4.78717 4.88012 4.90443 4.91867 4.94700 5.01188 5.04605 5.05881 5.12447 5.20253 5.33666 5.37682 5.53655 5.62731 5.77628 5.79204 5.91946 5.93396 6.45635 6.53395 6.57791 6.71695 7.26590 7.31289 7.95785 8.48519 9.25296 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.002862 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.241460 B = 9780.636540 C =10540.806305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 N -0.589 5.589 4 C -0.261 4.261 5 H 0.062 0.938 6 C -0.029 4.029 7 N -0.912 5.912 8 Si 0.949 3.051 9 H -0.283 1.283 10 H -0.305 1.305 11 H -0.275 1.275 12 C 0.186 3.814 13 H 0.069 0.931 14 C -0.135 4.135 15 C 0.116 3.884 16 N -0.698 5.698 17 C 0.512 3.488 18 O -0.577 6.577 19 C 0.048 3.952 20 O -0.293 6.293 21 C -0.091 4.091 22 C 0.057 3.943 23 C -0.071 4.071 24 N -0.312 5.312 25 N -0.371 5.371 26 C 0.093 3.907 27 C 0.081 3.919 28 C -0.090 4.090 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.247 0.753 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.413 0.587 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.115 0.885 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.101 0.899 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.610 -5.798 0.495 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.016 3.984 3 N -0.311 5.311 4 C -0.391 4.391 5 H 0.080 0.920 6 C -0.227 4.227 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.210 1.210 10 H -0.232 1.232 11 H -0.200 1.200 12 C 0.079 3.921 13 H 0.087 0.913 14 C -0.195 4.195 15 C -0.010 4.010 16 N -0.350 5.350 17 C 0.299 3.701 18 O -0.457 6.457 19 C -0.030 4.030 20 O -0.206 6.206 21 C -0.146 4.146 22 C -0.109 4.109 23 C -0.130 4.130 24 N -0.137 5.137 25 N -0.155 5.155 26 C -0.046 4.046 27 C -0.048 4.048 28 C -0.149 4.149 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.249 0.751 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.108 0.892 47 H 0.133 0.867 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.119 0.881 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.561 -6.502 0.323 20.615 hybrid contribution -0.854 1.371 0.739 1.776 sum 18.706 -5.131 1.062 19.426 Atomic orbital electron populations 1.22252 0.99195 0.99683 1.00445 1.20873 0.92301 0.86502 0.98737 1.44068 1.74074 1.10343 1.02607 1.19265 1.40772 0.90349 0.88755 0.92011 1.25646 0.98570 0.99309 0.99127 1.70159 1.40945 1.09511 1.34972 0.85571 0.77715 0.78327 0.80535 1.20959 1.23239 1.20029 1.20306 0.91173 0.95459 0.85211 0.91309 1.21978 0.99541 0.99869 0.98086 1.21876 0.86932 1.00093 0.92072 1.45765 1.15816 1.54415 1.18973 1.20516 0.83880 0.78000 0.87745 1.90664 1.81908 1.50206 1.22905 1.22468 0.87463 0.98369 0.94745 1.86280 1.23820 1.72941 1.37566 1.18289 0.89818 0.98503 1.08010 1.23039 0.94374 0.98139 0.95392 1.20228 0.95510 0.93748 1.03476 1.77282 1.09628 1.02973 1.23771 1.48652 1.15176 1.16925 1.34795 1.22269 0.77002 1.01559 1.03752 1.21761 0.90771 0.97409 0.94898 1.20580 1.04951 0.89707 0.99613 0.94037 0.92476 0.95263 0.93373 0.94221 0.94348 0.93059 0.93583 0.93898 0.92954 0.92522 0.75065 0.88447 0.88811 0.89661 0.89638 0.90524 0.89217 0.86661 0.88420 0.88477 0.88055 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 10.01 71.98 0.72 -5.10 16 2 C 0.14 5.42 5.66 86.38 0.49 5.91 16 3 N -0.59 -25.36 1.83 -678.03 -1.24 -26.60 16 4 C -0.26 -12.48 9.34 84.03 0.78 -11.70 16 5 H 0.06 2.96 7.90 -2.91 -0.02 2.94 16 6 C -0.03 -1.42 4.80 84.86 0.41 -1.01 16 7 N -0.91 -47.94 10.57 21.65 0.23 -47.72 16 8 Si 0.95 40.76 29.59 68.60 2.03 42.79 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 10 H -0.31 -13.70 7.11 99.48 0.71 -13.00 16 11 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 12 C 0.19 7.69 1.93 44.99 0.09 7.78 16 13 H 0.07 3.27 6.14 -2.39 -0.01 3.26 16 14 C -0.14 -5.42 8.19 71.98 0.59 -4.83 16 15 C 0.12 4.28 4.90 86.38 0.42 4.71 16 16 N -0.70 -24.02 5.39 -463.06 -2.49 -26.52 16 17 C 0.51 17.66 7.91 87.66 0.69 18.35 16 18 O -0.58 -24.35 16.50 16.01 0.26 -24.08 16 19 C 0.05 1.33 6.54 71.24 0.47 1.80 16 20 O -0.29 -9.12 9.70 -77.21 -0.75 -9.87 16 21 C -0.09 -2.52 6.15 22.11 0.14 -2.38 16 22 C 0.06 1.52 7.22 43.16 0.31 1.83 16 23 C -0.07 -1.55 10.44 71.24 0.74 -0.81 16 24 N -0.31 -8.16 12.57 -47.22 -0.59 -8.75 16 25 N -0.37 -7.64 4.04 -355.11 -1.44 -9.08 16 26 C 0.09 0.90 11.12 127.77 1.42 2.32 16 27 C 0.08 1.78 6.97 41.32 0.29 2.07 16 28 C -0.09 -1.32 9.89 71.24 0.70 -0.61 16 29 H 0.04 1.60 6.07 -2.39 -0.01 1.58 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.74 6.46 -2.38 -0.02 1.73 16 33 H 0.04 1.49 8.09 -2.39 -0.02 1.47 16 34 H 0.25 12.92 8.31 -92.71 -0.77 12.15 16 35 H 0.05 2.37 7.24 -2.39 -0.02 2.36 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.04 1.59 6.57 -2.38 -0.02 1.57 16 38 H 0.05 1.97 6.82 -2.38 -0.02 1.95 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.41 14.07 7.97 -92.71 -0.74 13.34 16 41 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 43 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.12 0.48 7.71 -2.39 -0.02 0.46 16 48 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.10 0.87 7.77 -2.39 -0.02 0.85 16 51 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -67.23 415.48 4.46 -62.77 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.19 Total: 28.76 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 8.26 Total: 18.30 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -5.54 Total: -118.67 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.48 Total: -33.96 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -67.23 4.46 -62.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153362779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.177 kcal (2) G-P(sol) polarization free energy of solvation -67.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds