Wall clock time and date at job start Tue Mar 31 2020 21:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46932 * 2 1 4 4 C 1.42896 * 114.00088 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47251 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47180 * 180.02562 * 5 4 3 7 7 C 1.34258 * 125.75566 * 124.99642 * 6 5 4 8 8 C 1.38052 * 107.41928 * 179.97438 * 7 6 5 9 9 C 1.47420 * 126.41513 * 179.97438 * 8 7 6 10 10 O 1.21610 * 120.00069 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99859 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99783 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46811 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.47303 * 64.99517 * 13 12 11 15 15 C 1.52998 * 109.46960 * 184.99964 * 13 12 11 16 16 N 1.46495 * 109.46911 * 304.99876 * 13 12 11 17 17 C 1.36933 * 120.00333 * 117.15052 * 16 13 12 18 18 H 1.07996 * 120.00657 * 214.06753 * 17 16 13 19 19 C 1.38815 * 119.99707 * 34.07455 * 17 16 13 20 20 N 1.31623 * 120.00057 * 17.03970 * 19 17 16 21 21 Si 1.86794 * 119.99952 * 197.04030 * 19 17 16 22 22 H 1.48500 * 109.47221 * 60.00023 * 21 19 17 23 23 H 1.48505 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47401 * 299.99731 * 21 19 17 25 25 C 1.46509 * 120.00004 * 297.15148 * 16 13 12 26 26 C 1.52999 * 109.46918 * 95.91459 * 25 16 13 27 27 C 1.41290 * 107.16872 * 0.24453 * 8 7 6 28 28 N 1.30457 * 108.02268 * 359.59016 * 27 8 7 29 29 H 1.08991 * 109.47076 * 60.00358 * 1 2 3 30 30 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47299 * 299.99887 * 1 2 3 32 32 H 1.08995 * 109.47619 * 239.99927 * 2 1 3 33 33 H 1.09004 * 109.47432 * 119.99679 * 2 1 3 34 34 H 1.08994 * 109.47415 * 59.99810 * 4 3 2 35 35 H 1.09004 * 109.47290 * 299.99798 * 4 3 2 36 36 H 1.09001 * 109.47152 * 59.99940 * 5 4 3 37 37 H 1.09004 * 109.46722 * 300.00041 * 5 4 3 38 38 H 1.08003 * 126.29037 * 0.02562 * 7 6 5 39 39 H 0.96994 * 120.00051 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.47323 * 59.99884 * 12 11 9 41 41 H 1.09001 * 109.46822 * 299.99628 * 12 11 9 42 42 H 1.09007 * 109.46933 * 300.00040 * 15 13 12 43 43 H 1.09004 * 109.47163 * 59.99541 * 15 13 12 44 44 H 1.08998 * 109.47429 * 179.97438 * 15 13 12 45 45 H 0.97001 * 120.00027 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.46808 * 335.91610 * 25 16 13 47 47 H 1.09001 * 109.46948 * 215.91768 * 25 16 13 48 48 H 1.09001 * 109.47257 * 60.00427 * 26 25 16 49 49 H 1.09002 * 109.46588 * 180.02562 * 26 25 16 50 50 H 1.08991 * 109.47656 * 299.99972 * 26 25 16 51 51 H 1.07995 * 125.98769 * 179.73575 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 7 5.2857 3.0542 0.0012 7 6 6.0183 3.7395 -0.8911 8 6 7.3443 3.5950 -0.5351 9 6 8.5059 4.1766 -1.2321 10 8 8.3401 4.8603 -2.2241 11 7 9.7516 3.9506 -0.7699 12 6 10.9059 4.5290 -1.4622 13 6 12.1911 4.1217 -0.7388 14 1 12.3224 3.0421 -0.8114 15 6 13.3856 4.8255 -1.3859 16 7 12.1014 4.5088 0.6713 17 6 12.1267 3.5491 1.6477 18 1 11.5515 3.6834 2.5519 19 6 12.8917 2.4037 1.4755 20 7 13.8384 2.3759 0.5615 21 14 12.5776 0.9018 2.5409 22 1 11.1824 0.4350 2.3393 23 1 13.5218 -0.1800 2.1620 24 1 12.7796 1.2567 3.9687 25 6 11.9846 5.9227 1.0367 26 6 10.5105 6.2756 1.2447 27 6 7.3800 2.7802 0.6186 28 7 6.1522 2.4695 0.9315 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8340 0.9765 -0.8891 35 1 3.8332 0.9768 0.8909 36 1 3.4221 3.4218 0.8911 37 1 3.4228 3.4223 -0.8889 38 1 5.6398 4.3013 -1.7323 39 1 9.8838 3.4050 0.0211 40 1 10.8199 5.6156 -1.4668 41 1 10.9353 4.1625 -2.4883 42 1 13.4523 4.5374 -2.4351 43 1 13.2542 5.9051 -1.3132 44 1 14.3011 4.5357 -0.8703 45 1 14.3733 1.5756 0.4414 46 1 12.3967 6.5396 0.2381 47 1 12.5359 6.1063 1.9590 48 1 10.0983 5.6587 2.0433 49 1 10.4236 7.3277 1.5161 50 1 9.9593 6.0920 0.3225 51 1 8.2679 2.4710 1.1499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156051501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:09 Heat of formation + Delta-G solvation = 9.559654 kcal Electronic energy + Delta-G solvation = -29939.239524 eV Core-core repulsion = 25876.296033 eV Total energy + Delta-G solvation = -4062.943491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33854 -38.82567 -38.46252 -36.77409 -34.28439 -33.50756 -31.87612 -31.72492 -31.03957 -30.25738 -28.73755 -28.10556 -25.55530 -23.90821 -23.72586 -23.24381 -22.35788 -21.57683 -20.67002 -19.53477 -19.17488 -17.86241 -17.10323 -16.83870 -16.70118 -15.66175 -15.55218 -15.36455 -14.90292 -14.69489 -14.59059 -14.23718 -14.14327 -13.72975 -13.60544 -13.06276 -12.87837 -12.79418 -12.63807 -12.59540 -12.32269 -12.25411 -11.99272 -11.77323 -11.63657 -11.59618 -11.47897 -11.03059 -10.97810 -10.95320 -10.76692 -10.60751 -10.29043 -10.07979 -10.03133 -9.61518 -9.60394 -9.40661 -9.37047 -8.71249 -8.49011 -8.20510 -6.62628 -5.86351 -3.35927 1.58101 2.08159 2.33127 3.29156 3.33080 3.39952 3.41493 3.88464 3.93200 4.29871 4.43419 4.47002 4.60373 4.73970 4.79170 4.81167 4.90182 4.94220 5.18454 5.21059 5.28493 5.31515 5.38649 5.43829 5.45887 5.53926 5.66870 5.87653 5.99467 6.11797 6.26028 6.32098 6.43305 6.47379 6.54371 6.58433 6.63741 6.66838 6.72586 6.77625 6.87035 6.96565 7.17542 7.22103 7.50709 7.54406 7.59598 7.78079 8.31043 8.46404 8.88581 9.18265 9.79814 10.37903 11.19784 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.002621 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.129495 B =10678.685884 C =11918.608202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.390 6.390 4 C 0.053 3.947 5 C 0.137 3.863 6 N -0.367 5.367 7 C 0.122 3.878 8 C -0.280 4.280 9 C 0.585 3.415 10 O -0.571 6.571 11 N -0.695 5.695 12 C 0.104 3.896 13 C 0.173 3.827 14 H 0.102 0.898 15 C -0.144 4.144 16 N -0.581 5.581 17 C -0.263 4.263 18 H 0.063 0.937 19 C 0.012 3.988 20 N -0.890 5.890 21 Si 0.896 3.104 22 H -0.282 1.282 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.140 3.860 26 C -0.168 4.168 27 C 0.090 3.910 28 N -0.301 5.301 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.186 0.814 39 H 0.410 0.590 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.255 0.745 46 H 0.037 0.963 47 H 0.040 0.960 48 H 0.046 0.954 49 H 0.031 0.969 50 H 0.051 0.949 51 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.783 -1.685 -2.653 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.308 6.308 4 C -0.025 4.025 5 C 0.016 3.984 6 N -0.148 5.148 7 C -0.028 4.028 8 C -0.294 4.294 9 C 0.371 3.629 10 O -0.453 6.453 11 N -0.345 5.345 12 C -0.021 4.021 13 C 0.066 3.934 14 H 0.120 0.880 15 C -0.203 4.203 16 N -0.302 5.302 17 C -0.392 4.392 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.532 5.532 21 Si 0.725 3.275 22 H -0.208 1.208 23 H -0.218 1.218 24 H -0.209 1.209 25 C 0.014 3.986 26 C -0.228 4.228 27 C -0.098 4.098 28 N -0.120 5.120 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.203 0.797 39 H 0.247 0.753 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -20.764 -1.840 -2.548 21.001 hybrid contribution 0.702 -0.874 0.398 1.189 sum -20.063 -2.714 -2.150 20.359 Atomic orbital electron populations 1.21752 0.93429 1.02453 1.03228 1.22496 0.95655 0.83063 1.00502 1.87772 1.20115 1.27319 1.95635 1.22607 0.81699 0.96034 1.02156 1.21416 0.74374 0.97172 1.05456 1.48285 1.06395 1.38968 1.21150 1.22921 0.90861 0.94751 0.94241 1.20440 0.93692 1.12302 1.03006 1.17224 0.82442 0.79911 0.83291 1.90711 1.86260 1.41234 1.27064 1.45736 1.04817 1.52341 1.31589 1.22158 0.87161 0.97533 0.95282 1.20534 0.88496 1.01268 0.83121 0.88026 1.21998 1.01355 0.98332 0.98625 1.43846 1.85170 1.00288 1.00932 1.19036 1.22267 0.98118 0.99807 0.91918 1.25174 0.95171 1.00146 0.98363 1.69994 1.19598 1.27945 1.35709 0.86496 0.77663 0.82897 0.80414 1.20813 1.21765 1.20903 1.20772 0.93181 0.86753 0.97929 1.22416 1.00601 0.98370 1.01414 1.24273 0.95753 0.94909 0.94834 1.77170 1.00386 1.21185 1.13269 0.91764 0.90907 0.91727 0.93170 0.93041 0.92601 0.91431 0.88516 0.87520 0.79655 0.75313 0.92888 0.93073 0.94722 0.94992 0.90679 0.93508 0.94476 0.94200 0.93475 0.94993 0.92981 0.78866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.39 -3.51 10.34 -35.23 -0.36 -3.87 16 4 C 0.05 0.47 6.11 37.16 0.23 0.70 16 5 C 0.14 1.18 6.86 -4.04 -0.03 1.16 16 6 N -0.37 -4.40 3.65 -60.80 -0.22 -4.62 16 7 C 0.12 1.57 11.25 -16.56 -0.19 1.38 16 8 C -0.28 -4.34 6.13 -105.07 -0.64 -4.98 16 9 C 0.58 10.65 7.77 -12.52 -0.10 10.56 16 10 O -0.57 -11.84 16.90 5.27 0.09 -11.75 16 11 N -0.70 -12.84 4.27 -61.38 -0.26 -13.10 16 12 C 0.10 2.01 4.36 -4.04 -0.02 2.00 16 13 C 0.17 3.67 1.95 -67.93 -0.13 3.54 16 14 H 0.10 2.45 5.94 -51.93 -0.31 2.14 16 15 C -0.14 -2.90 9.05 37.16 0.34 -2.56 16 16 N -0.58 -12.85 1.88 -165.66 -0.31 -13.17 16 17 C -0.26 -6.38 9.07 -15.06 -0.14 -6.52 16 18 H 0.06 1.53 7.89 -52.49 -0.41 1.12 16 19 C 0.01 0.29 4.86 -17.43 -0.08 0.21 16 20 N -0.89 -23.40 10.90 55.49 0.61 -22.79 16 21 Si 0.90 20.05 29.59 -169.99 -5.03 15.03 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 C 0.14 2.82 5.75 -4.04 -0.02 2.79 16 26 C -0.17 -3.07 9.95 37.16 0.37 -2.70 16 27 C 0.09 1.34 11.50 -16.98 -0.20 1.15 16 28 N -0.30 -4.32 12.33 30.86 0.38 -3.94 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.11 0.68 8.06 -51.93 -0.42 0.26 16 38 H 0.19 1.92 8.06 -52.48 -0.42 1.49 16 39 H 0.41 7.68 6.69 -40.82 -0.27 7.41 16 40 H 0.05 1.05 6.98 -51.93 -0.36 0.69 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.03 0.60 6.56 -51.93 -0.34 0.26 16 44 H 0.07 1.71 7.69 -51.93 -0.40 1.31 16 45 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 46 H 0.04 0.72 6.29 -51.93 -0.33 0.39 16 47 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.05 0.98 5.32 -51.93 -0.28 0.71 16 51 H 0.19 2.71 7.50 -52.49 -0.39 2.32 16 LS Contribution 413.81 15.07 6.24 6.24 Total: -1.00 -29.36 413.81 -7.42 -36.79 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.56 Total: 8.28 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 0.02 Total: 6.91 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.19 Total: -57.62 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.28 Total: -15.62 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -29.36 -7.42 -36.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156051501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.347 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds