Wall clock time and date at job start Tue Mar 31 2020 21:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46932 * 2 1 4 4 C 1.42896 * 114.00088 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47251 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47180 * 180.02562 * 5 4 3 7 7 C 1.34258 * 125.75566 * 124.99642 * 6 5 4 8 8 C 1.38052 * 107.41928 * 179.97438 * 7 6 5 9 9 C 1.47420 * 126.41513 * 179.97438 * 8 7 6 10 10 O 1.21610 * 120.00069 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99859 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99783 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46811 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.47303 * 64.99517 * 13 12 11 15 15 C 1.52998 * 109.46960 * 184.99964 * 13 12 11 16 16 N 1.46495 * 109.46911 * 304.99876 * 13 12 11 17 17 C 1.36933 * 120.00333 * 117.15052 * 16 13 12 18 18 H 1.07996 * 120.00657 * 214.06753 * 17 16 13 19 19 C 1.38815 * 119.99707 * 34.07455 * 17 16 13 20 20 N 1.31623 * 120.00057 * 17.03970 * 19 17 16 21 21 Si 1.86794 * 119.99952 * 197.04030 * 19 17 16 22 22 H 1.48500 * 109.47221 * 60.00023 * 21 19 17 23 23 H 1.48505 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47401 * 299.99731 * 21 19 17 25 25 C 1.46509 * 120.00004 * 297.15148 * 16 13 12 26 26 C 1.52999 * 109.46918 * 95.91459 * 25 16 13 27 27 C 1.41290 * 107.16872 * 0.24453 * 8 7 6 28 28 N 1.30457 * 108.02268 * 359.59016 * 27 8 7 29 29 H 1.08991 * 109.47076 * 60.00358 * 1 2 3 30 30 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47299 * 299.99887 * 1 2 3 32 32 H 1.08995 * 109.47619 * 239.99927 * 2 1 3 33 33 H 1.09004 * 109.47432 * 119.99679 * 2 1 3 34 34 H 1.08994 * 109.47415 * 59.99810 * 4 3 2 35 35 H 1.09004 * 109.47290 * 299.99798 * 4 3 2 36 36 H 1.09001 * 109.47152 * 59.99940 * 5 4 3 37 37 H 1.09004 * 109.46722 * 300.00041 * 5 4 3 38 38 H 1.08003 * 126.29037 * 0.02562 * 7 6 5 39 39 H 0.96994 * 120.00051 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.47323 * 59.99884 * 12 11 9 41 41 H 1.09001 * 109.46822 * 299.99628 * 12 11 9 42 42 H 1.09007 * 109.46933 * 300.00040 * 15 13 12 43 43 H 1.09004 * 109.47163 * 59.99541 * 15 13 12 44 44 H 1.08998 * 109.47429 * 179.97438 * 15 13 12 45 45 H 0.97001 * 120.00027 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.46808 * 335.91610 * 25 16 13 47 47 H 1.09001 * 109.46948 * 215.91768 * 25 16 13 48 48 H 1.09001 * 109.47257 * 60.00427 * 26 25 16 49 49 H 1.09002 * 109.46588 * 180.02562 * 26 25 16 50 50 H 1.08991 * 109.47656 * 299.99972 * 26 25 16 51 51 H 1.07995 * 125.98769 * 179.73575 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 7 5.2857 3.0542 0.0012 7 6 6.0183 3.7395 -0.8911 8 6 7.3443 3.5950 -0.5351 9 6 8.5059 4.1766 -1.2321 10 8 8.3401 4.8603 -2.2241 11 7 9.7516 3.9506 -0.7699 12 6 10.9059 4.5290 -1.4622 13 6 12.1911 4.1217 -0.7388 14 1 12.3224 3.0421 -0.8114 15 6 13.3856 4.8255 -1.3859 16 7 12.1014 4.5088 0.6713 17 6 12.1267 3.5491 1.6477 18 1 11.5515 3.6834 2.5519 19 6 12.8917 2.4037 1.4755 20 7 13.8384 2.3759 0.5615 21 14 12.5776 0.9018 2.5409 22 1 11.1824 0.4350 2.3393 23 1 13.5218 -0.1800 2.1620 24 1 12.7796 1.2567 3.9687 25 6 11.9846 5.9227 1.0367 26 6 10.5105 6.2756 1.2447 27 6 7.3800 2.7802 0.6186 28 7 6.1522 2.4695 0.9315 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8340 0.9765 -0.8891 35 1 3.8332 0.9768 0.8909 36 1 3.4221 3.4218 0.8911 37 1 3.4228 3.4223 -0.8889 38 1 5.6398 4.3013 -1.7323 39 1 9.8838 3.4050 0.0211 40 1 10.8199 5.6156 -1.4668 41 1 10.9353 4.1625 -2.4883 42 1 13.4523 4.5374 -2.4351 43 1 13.2542 5.9051 -1.3132 44 1 14.3011 4.5357 -0.8703 45 1 14.3733 1.5756 0.4414 46 1 12.3967 6.5396 0.2381 47 1 12.5359 6.1063 1.9590 48 1 10.0983 5.6587 2.0433 49 1 10.4236 7.3277 1.5161 50 1 9.9593 6.0920 0.3225 51 1 8.2679 2.4710 1.1499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156051501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:08 Heat of formation + Delta-G solvation = -7.353913 kcal Electronic energy + Delta-G solvation = -29939.972951 eV Core-core repulsion = 25876.296033 eV Total energy + Delta-G solvation = -4063.676919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.40904 -40.23959 -39.16718 -38.43574 -35.26998 -34.95991 -33.68163 -32.69701 -32.29091 -31.35119 -29.94015 -29.55599 -26.99957 -25.73487 -24.57940 -23.80062 -23.62531 -23.13651 -21.66322 -20.96677 -20.73820 -19.04518 -18.52376 -17.83325 -17.47601 -16.96381 -16.69507 -16.56743 -16.30478 -16.23863 -15.68968 -15.48753 -15.27137 -14.97946 -14.79919 -14.48564 -14.26221 -13.98927 -13.77947 -13.67796 -13.42905 -13.31764 -13.28209 -13.12477 -12.93123 -12.74466 -12.71011 -12.48035 -12.38867 -12.26588 -12.17365 -12.05579 -11.93185 -11.77962 -11.30552 -11.11695 -10.81990 -10.71616 -10.63029 -10.37608 -9.98342 -9.57022 -8.46037 -7.77177 -5.27934 0.52258 1.12986 1.20263 1.53762 1.57038 1.60848 2.52871 2.55848 2.59601 2.63193 3.36868 3.49557 3.71867 3.79639 3.82872 3.87797 4.11569 4.16338 4.18487 4.26254 4.32664 4.36377 4.44790 4.51381 4.57749 4.62545 4.66134 4.72764 4.78140 4.84391 4.86559 4.95225 4.97796 5.00015 5.05367 5.11641 5.24622 5.27326 5.35899 5.37967 5.59875 5.67367 5.76924 5.79632 5.82551 5.91309 6.05629 6.46116 6.55844 6.85595 7.29232 7.44485 7.98197 8.51195 9.26135 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.002621 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.129495 B =10678.685884 C =11918.608202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.399 6.399 4 C 0.059 3.941 5 C 0.132 3.868 6 N -0.356 5.356 7 C 0.142 3.858 8 C -0.309 4.309 9 C 0.588 3.412 10 O -0.599 6.599 11 N -0.697 5.697 12 C 0.118 3.882 13 C 0.179 3.821 14 H 0.072 0.928 15 C -0.135 4.135 16 N -0.589 5.589 17 C -0.258 4.258 18 H 0.061 0.939 19 C -0.031 4.031 20 N -0.914 5.914 21 Si 0.948 3.052 22 H -0.272 1.272 23 H -0.303 1.303 24 H -0.285 1.285 25 C 0.139 3.861 26 C -0.153 4.153 27 C 0.086 3.914 28 N -0.317 5.317 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.215 0.785 39 H 0.408 0.592 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.248 0.752 46 H 0.045 0.955 47 H 0.030 0.970 48 H 0.038 0.962 49 H 0.053 0.947 50 H 0.045 0.955 51 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.125 -1.279 -2.832 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.318 6.318 4 C -0.019 4.019 5 C 0.012 3.988 6 N -0.136 5.136 7 C -0.010 4.010 8 C -0.324 4.324 9 C 0.377 3.623 10 O -0.483 6.483 11 N -0.345 5.345 12 C -0.008 4.008 13 C 0.071 3.929 14 H 0.090 0.910 15 C -0.194 4.194 16 N -0.311 5.311 17 C -0.388 4.388 18 H 0.078 0.922 19 C -0.228 4.228 20 N -0.559 5.559 21 Si 0.778 3.222 22 H -0.198 1.198 23 H -0.229 1.229 24 H -0.211 1.211 25 C 0.013 3.987 26 C -0.212 4.212 27 C -0.101 4.101 28 N -0.136 5.136 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.155 0.845 38 H 0.231 0.769 39 H 0.245 0.755 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.057 0.943 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -23.146 -1.435 -2.701 23.347 hybrid contribution 1.329 -0.978 0.462 1.713 sum -21.817 -2.412 -2.239 22.064 Atomic orbital electron populations 1.21765 0.92290 1.03512 1.03020 1.22695 0.96630 0.82320 1.00888 1.87758 1.19859 1.28520 1.95659 1.22479 0.81878 0.96082 1.01467 1.21744 0.72262 0.97394 1.07408 1.48520 1.07423 1.37645 1.20025 1.23299 0.89968 0.93525 0.94197 1.20288 0.93871 1.14184 1.04008 1.17502 0.82740 0.79246 0.82849 1.90686 1.86613 1.42638 1.28326 1.45703 1.04947 1.52384 1.31484 1.21891 0.86590 0.97313 0.95030 1.20393 0.89804 0.99625 0.83046 0.90956 1.21865 0.99440 0.98959 0.99133 1.43958 1.85249 1.00865 1.00993 1.19181 1.21232 0.98492 0.99923 0.92174 1.25699 0.95358 1.02178 0.99592 1.70126 1.20579 1.27916 1.37238 0.85657 0.77558 0.80161 0.78852 1.19777 1.22947 1.21105 1.20843 0.94424 0.85722 0.97708 1.22221 0.98704 0.99553 1.00746 1.24278 0.96095 0.94960 0.94810 1.77137 1.00446 1.21809 1.14254 0.91812 0.89266 0.92048 0.92573 0.92907 0.92669 0.92807 0.87690 0.84489 0.76886 0.75529 0.93024 0.92950 0.93035 0.93659 0.93628 0.94300 0.93627 0.95175 0.94262 0.92786 0.93642 0.78971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.05 0.64 6.66 71.98 0.48 1.12 16 3 O -0.40 -6.46 10.34 -148.98 -1.54 -8.00 16 4 C 0.06 0.94 6.11 71.98 0.44 1.38 16 5 C 0.13 1.91 6.86 86.38 0.59 2.51 16 6 N -0.36 -7.74 3.65 -346.28 -1.26 -9.00 16 7 C 0.14 3.30 11.25 84.28 0.95 4.25 16 8 C -0.31 -9.21 6.13 -20.15 -0.12 -9.33 16 9 C 0.59 20.98 7.77 86.66 0.67 21.66 16 10 O -0.60 -24.22 16.90 -4.06 -0.07 -24.29 16 11 N -0.70 -25.52 4.27 -466.35 -1.99 -27.52 16 12 C 0.12 4.49 4.36 86.38 0.38 4.87 16 13 C 0.18 7.59 1.95 44.99 0.09 7.68 16 14 H 0.07 3.56 5.94 -2.39 -0.01 3.54 16 15 C -0.13 -5.41 9.05 71.98 0.65 -4.75 16 16 N -0.59 -26.03 1.88 -678.03 -1.28 -27.31 16 17 C -0.26 -12.58 9.07 84.03 0.76 -11.82 16 18 H 0.06 2.94 7.89 -2.91 -0.02 2.91 16 19 C -0.03 -1.55 4.86 84.86 0.41 -1.14 16 20 N -0.91 -49.04 10.90 21.65 0.24 -48.80 16 21 Si 0.95 41.64 29.59 68.60 2.03 43.67 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 25 C 0.14 5.47 5.75 86.38 0.50 5.97 16 26 C -0.15 -5.35 9.95 71.98 0.72 -4.64 16 27 C 0.09 2.50 11.50 85.65 0.99 3.49 16 28 N -0.32 -8.70 12.33 -56.27 -0.69 -9.40 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 37 H 0.14 1.21 8.06 -2.38 -0.02 1.19 16 38 H 0.21 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.41 15.34 6.69 -92.71 -0.62 14.72 16 40 H 0.05 1.99 6.98 -2.39 -0.02 1.98 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.04 1.66 6.56 -2.38 -0.02 1.64 16 44 H 0.04 2.09 7.69 -2.39 -0.02 2.07 16 45 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 46 H 0.05 1.71 6.29 -2.39 -0.02 1.70 16 47 H 0.03 1.24 8.09 -2.39 -0.02 1.22 16 48 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.04 1.65 5.32 -2.39 -0.01 1.64 16 51 H 0.19 5.41 7.50 -2.91 -0.02 5.39 16 Total: -1.00 -62.49 413.81 3.97 -58.52 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.30 Total: 31.56 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 8.24 Total: 20.57 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -4.99 Total: -122.02 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.61 Total: -32.29 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -62.49 3.97 -58.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156051501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.171 kcal (2) G-P(sol) polarization free energy of solvation -62.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds