Wall clock time and date at job start Tue Mar 31 2020 22:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.39910 * 2 1 4 4 C 1.34672 * 106.81700 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01948 * 0.22851 * 4 3 2 6 6 C 1.30502 * 109.25683 * 359.61488 * 5 4 3 7 7 C 1.50700 * 125.64425 * 180.14781 * 6 5 4 8 8 O 1.42902 * 109.47115 * 270.27059 * 7 6 5 9 9 C 1.42905 * 113.99937 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46919 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00111 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99571 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99774 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47058 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47018 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47392 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47392 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.47018 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.47058 * 179.97438 * 18 17 16 20 20 C 1.36939 * 120.00112 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99471 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99848 * 179.97438 * 20 19 18 23 23 N 1.31612 * 120.00252 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99609 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47031 * 60.00404 * 24 22 20 26 26 H 1.48496 * 109.46739 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47196 * 300.00330 * 24 22 20 28 28 H 1.09003 * 109.47221 * 90.02476 * 1 2 3 29 29 H 1.09003 * 109.47097 * 210.02578 * 1 2 3 30 30 H 1.09001 * 109.46668 * 330.02549 * 1 2 3 31 31 H 1.07997 * 126.58796 * 359.97438 * 3 2 1 32 32 H 1.08002 * 125.98510 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47481 * 30.27445 * 7 6 5 34 34 H 1.09006 * 109.46847 * 150.28064 * 7 6 5 35 35 H 1.09003 * 109.46974 * 300.00654 * 9 8 7 36 36 H 1.09001 * 109.47047 * 60.00673 * 9 8 7 37 37 H 0.97002 * 120.00266 * 0.02562 * 12 10 9 38 38 H 1.08998 * 109.46836 * 299.99625 * 13 12 10 39 39 H 1.08993 * 109.47314 * 60.00160 * 13 12 10 40 40 H 1.08998 * 109.46752 * 299.99384 * 14 13 12 41 41 H 1.08993 * 109.47167 * 59.99777 * 14 13 12 42 42 H 1.09003 * 109.47194 * 299.99377 * 15 14 13 43 43 H 1.08997 * 109.47904 * 59.99678 * 15 14 13 44 44 H 1.09003 * 109.46441 * 299.99836 * 16 15 14 45 45 H 1.08997 * 109.46860 * 59.99037 * 16 15 14 46 46 H 1.08998 * 109.46740 * 299.99247 * 17 16 15 47 47 H 1.08993 * 109.47450 * 59.99806 * 17 16 15 48 48 H 1.08998 * 109.46752 * 299.99242 * 18 17 16 49 49 H 1.08993 * 109.47167 * 59.99635 * 18 17 16 50 50 H 0.97002 * 119.99960 * 359.97438 * 19 18 17 51 51 H 0.97003 * 119.99967 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 -0.0042 6 6 2.2663 -1.0870 0.0006 7 6 1.8019 -2.5206 0.0008 8 8 1.6554 -2.9741 -1.3464 9 6 1.2159 -4.3292 -1.4590 10 6 1.0972 -4.6994 -2.9150 11 8 1.3632 -3.8834 -3.7718 12 7 0.6953 -5.9374 -3.2649 13 6 0.5804 -6.2975 -4.6803 14 6 0.1085 -7.7479 -4.8008 15 6 -0.0109 -8.1241 -6.2790 16 6 -0.4834 -9.5744 -6.3997 17 6 -0.6034 -9.9504 -7.8778 18 6 -1.0754 -11.4008 -7.9984 19 7 -1.1908 -11.7607 -9.4138 20 6 -1.5992 -13.0185 -9.7694 21 1 -1.8366 -13.7450 -9.0063 22 6 -1.7091 -13.3593 -11.1105 23 7 -1.4203 -12.4738 -12.0403 24 14 -2.2656 -15.0753 -11.5954 25 1 -3.6228 -15.3286 -11.0485 26 1 -2.2996 -15.1846 -13.0760 27 1 -1.3162 -16.0770 -11.0473 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 1.9613 2.1345 -0.0004 32 1 4.4369 1.2611 0.0003 33 1 2.5363 -3.1404 0.5150 34 1 0.8430 -2.5918 0.5143 35 1 1.9379 -4.9868 -0.9749 36 1 0.2448 -4.4375 -0.9759 37 1 0.4821 -6.5899 -2.5796 38 1 -0.1409 -5.6396 -5.1651 39 1 1.5519 -6.1899 -5.1626 40 1 0.8295 -8.4060 -4.3159 41 1 -0.8631 -7.8551 -4.3186 42 1 -0.7317 -7.4661 -6.7644 43 1 0.9609 -8.0170 -6.7609 44 1 0.2370 -10.2327 -5.9142 45 1 -1.4553 -9.6810 -5.9178 46 1 -1.3241 -9.2920 -8.3628 47 1 0.3682 -9.8436 -8.3599 48 1 -0.3544 -12.0589 -7.5135 49 1 -2.0469 -11.5080 -7.5161 50 1 -0.9780 -11.1081 -10.0991 51 1 -1.4975 -12.7118 -12.9775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178782709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:43 Heat of formation + Delta-G solvation = -52.488726 kcal Electronic energy + Delta-G solvation = -26800.516398 eV Core-core repulsion = 22734.882287 eV Total energy + Delta-G solvation = -4065.634111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.06266 -40.84837 -38.70318 -37.85974 -36.72008 -35.31522 -34.98069 -33.55300 -32.14961 -31.54953 -29.51905 -28.15019 -27.69748 -26.62876 -25.54178 -23.62244 -22.40379 -22.24760 -22.04310 -21.44802 -20.95927 -19.11957 -18.51830 -18.07797 -17.76337 -17.41688 -16.91235 -16.83816 -16.64032 -16.13963 -16.11315 -15.59920 -15.44263 -15.36101 -15.18340 -14.92162 -14.56747 -14.11998 -14.09043 -13.91051 -13.80723 -13.50111 -13.42098 -13.15046 -13.04037 -12.89777 -12.80462 -12.61646 -12.39363 -12.20891 -12.00344 -11.80120 -11.79008 -11.47011 -11.33542 -11.04720 -10.92346 -10.90076 -10.83758 -10.61163 -10.14119 -9.48406 -9.01576 -7.96159 -5.25953 0.86352 1.46791 1.50720 1.55601 1.57038 1.70924 1.91020 2.15869 2.56058 3.01567 3.37317 3.55132 3.72196 3.75509 3.85242 3.92214 4.02347 4.03252 4.16090 4.23425 4.24129 4.29439 4.30777 4.35293 4.37438 4.40900 4.54477 4.59710 4.64829 4.67391 4.77117 4.79084 4.86238 4.98730 4.99273 5.07647 5.16542 5.26364 5.29775 5.34915 5.42246 5.47865 5.54401 5.57309 5.76915 5.90880 6.17459 6.26371 6.55525 7.06515 7.23548 7.31760 8.09095 8.31781 9.27603 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.046623 B = 0.001035 C = 0.001031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.413127 B =27056.218796 C =27154.186802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.452 5.452 3 C -0.041 4.041 4 C -0.062 4.062 5 N -0.520 5.520 6 C 0.177 3.823 7 C 0.149 3.851 8 O -0.398 6.398 9 C 0.047 3.953 10 C 0.504 3.496 11 O -0.583 6.583 12 N -0.711 5.711 13 C 0.120 3.880 14 C -0.115 4.115 15 C -0.115 4.115 16 C -0.103 4.103 17 C -0.118 4.118 18 C 0.148 3.852 19 N -0.752 5.752 20 C -0.253 4.253 21 H 0.076 0.924 22 C -0.076 4.076 23 N -0.972 5.972 24 Si 0.977 3.023 25 H -0.276 1.276 26 H -0.294 1.294 27 H -0.276 1.276 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.212 0.788 32 H 0.184 0.816 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.421 0.579 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.019 0.981 49 H 0.020 0.980 50 H 0.372 0.628 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 25.793 35.700 44.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.134 5.134 3 C -0.176 4.176 4 C -0.210 4.210 5 N -0.241 5.241 6 C -0.085 4.085 7 C 0.072 3.928 8 O -0.316 6.316 9 C -0.032 4.032 10 C 0.291 3.709 11 O -0.463 6.463 12 N -0.366 5.366 13 C -0.004 4.004 14 C -0.153 4.153 15 C -0.153 4.153 16 C -0.141 4.141 17 C -0.156 4.156 18 C 0.022 3.978 19 N -0.395 5.395 20 C -0.385 4.385 21 H 0.094 0.906 22 C -0.269 4.269 23 N -0.623 5.623 24 Si 0.805 3.195 25 H -0.201 1.201 26 H -0.220 1.220 27 H -0.202 1.202 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.229 0.771 32 H 0.201 0.799 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.259 0.741 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.037 0.963 49 H 0.038 0.962 50 H 0.204 0.796 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.761 25.772 34.972 43.530 hybrid contribution -0.693 -0.306 -0.871 1.155 sum 2.067 25.466 34.101 42.610 Atomic orbital electron populations 1.22414 0.74016 1.06852 1.04620 1.45574 1.09281 1.06066 1.52485 1.23354 0.90746 0.93990 1.09468 1.22770 0.98339 0.90653 1.09232 1.70138 1.20306 1.13842 1.19847 1.23115 0.85946 0.91536 1.07924 1.20726 1.02361 0.85988 0.83720 1.88050 1.88874 1.27966 1.26689 1.22423 1.03974 0.84424 0.92372 1.20990 0.76172 0.82015 0.91772 1.90746 1.50508 1.51207 1.53792 1.45757 1.68334 1.13272 1.09233 1.21330 1.00806 0.96770 0.81446 1.21682 1.03170 0.93472 0.96976 1.21464 1.01612 0.95957 0.96315 1.21412 1.02170 0.96381 0.94104 1.21651 1.00626 0.94974 0.98355 1.20879 0.97230 0.94957 0.84730 1.42673 1.81374 1.12473 1.02931 1.19671 1.36258 0.90764 0.91758 0.90571 1.25635 1.03317 1.02166 0.95737 1.69822 1.56889 1.35923 0.99636 0.85160 0.78452 0.79403 0.76447 1.20147 1.21998 1.20208 0.90404 0.87565 0.86899 0.77134 0.79889 0.88884 0.87678 0.86791 0.85766 0.74078 0.92688 0.93006 0.89766 0.89533 0.92043 0.92203 0.91166 0.91041 0.92792 0.92892 0.96268 0.96202 0.79630 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.23 10.97 127.77 1.40 1.63 16 2 N -0.45 -5.86 3.15 -537.60 -1.69 -7.56 16 3 C -0.04 -0.52 11.58 83.09 0.96 0.44 16 4 C -0.06 -1.12 11.87 83.52 0.99 -0.13 16 5 N -0.52 -12.35 11.25 -188.13 -2.12 -14.47 16 6 C 0.18 3.22 7.53 138.13 1.04 4.26 16 7 C 0.15 1.70 6.24 71.24 0.44 2.15 16 8 O -0.40 -7.10 9.86 -129.94 -1.28 -8.38 16 9 C 0.05 0.43 6.42 71.24 0.46 0.89 16 10 C 0.50 9.13 7.91 87.66 0.69 9.82 16 11 O -0.58 -18.18 16.50 16.01 0.26 -17.92 16 12 N -0.71 -8.43 5.56 -463.07 -2.57 -11.00 16 13 C 0.12 1.91 5.67 86.38 0.49 2.40 16 14 C -0.12 -1.41 5.33 30.59 0.16 -1.24 16 15 C -0.12 -2.09 5.21 30.59 0.16 -1.93 16 16 C -0.10 -2.25 5.21 30.59 0.16 -2.09 16 17 C -0.12 -3.75 5.33 30.59 0.16 -3.59 16 18 C 0.15 6.04 6.26 86.38 0.54 6.58 16 19 N -0.75 -39.99 5.60 -343.45 -1.92 -41.92 16 20 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 22 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 23 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 24 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 28 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.11 -0.04 7.05 -2.39 -0.02 -0.06 16 30 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 32 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 0.29 7.07 -2.38 -0.02 0.27 16 35 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.42 1.47 8.47 -92.71 -0.79 0.69 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.37 21.02 7.67 -92.71 -0.71 20.31 16 51 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -91.91 427.80 1.38 -90.53 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -0.58 Total: 21.37 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 8.97 Total: 1.39 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -8.03 Total: -135.64 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -1.02 Total: -26.30 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -91.91 1.38 -90.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178782709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.040 kcal (2) G-P(sol) polarization free energy of solvation -91.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds