Wall clock time and date at job start Tue Mar 31 2020 22:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.50704 * 109.47338 * 150.00083 * 3 2 1 6 6 O 1.21282 * 119.99404 * 4.99870 * 5 3 2 7 7 N 1.34773 * 120.00398 * 184.99445 * 5 3 2 8 8 C 1.46496 * 120.00110 * 179.97438 * 7 5 3 9 9 C 1.53003 * 109.47287 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47215 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47043 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46929 * 180.02562 * 12 11 10 14 14 N 1.46498 * 109.46756 * 179.97438 * 13 12 11 15 15 C 1.36943 * 119.99908 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99927 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00056 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00048 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99851 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47430 * 90.00029 * 19 17 15 21 21 H 1.48506 * 109.46639 * 210.00123 * 19 17 15 22 22 H 1.48495 * 109.47260 * 329.99419 * 19 17 15 23 23 C 1.50700 * 109.47377 * 270.00006 * 3 2 1 24 24 C 1.39872 * 126.03635 * 324.69642 * 23 3 2 25 25 N 1.30840 * 108.19913 * 179.81471 * 24 23 3 26 26 N 1.40084 * 108.20939 * 0.43848 * 25 24 23 27 27 C 1.46500 * 126.03832 * 179.73940 * 26 25 24 28 28 C 1.34953 * 107.92235 * 359.71715 * 26 25 24 29 29 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99996 * 0.02562 * 7 5 3 33 33 H 1.09003 * 109.47400 * 300.00751 * 8 7 5 34 34 H 1.08997 * 109.47213 * 60.00247 * 8 7 5 35 35 H 1.08994 * 109.47165 * 300.00204 * 9 8 7 36 36 H 1.08998 * 109.46533 * 60.00167 * 9 8 7 37 37 H 1.09003 * 109.47439 * 300.00273 * 10 9 8 38 38 H 1.09006 * 109.46783 * 60.00144 * 10 9 8 39 39 H 1.09003 * 109.47123 * 300.00340 * 11 10 9 40 40 H 1.08996 * 109.47221 * 60.00292 * 11 10 9 41 41 H 1.09000 * 109.46248 * 299.99541 * 12 11 10 42 42 H 1.08996 * 109.47226 * 59.99853 * 12 11 10 43 43 H 1.09006 * 109.46595 * 299.99311 * 13 12 11 44 44 H 1.08997 * 109.47677 * 59.99194 * 13 12 11 45 45 H 0.96998 * 120.00211 * 359.97438 * 14 13 12 46 46 H 0.96998 * 119.99877 * 180.02562 * 18 17 15 47 47 H 1.07995 * 125.90070 * 359.97438 * 24 23 3 48 48 H 1.08997 * 109.47002 * 269.96924 * 27 26 25 49 49 H 1.08999 * 109.47203 * 29.97934 * 27 26 25 50 50 H 1.08999 * 109.46485 * 149.97430 * 27 26 25 51 51 H 1.07995 * 126.12698 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2640 0.7104 6 8 3.7897 0.2046 1.0914 7 7 4.0254 2.4041 0.9223 8 6 5.3165 2.3638 1.6134 9 6 5.8805 3.7819 1.7235 10 6 7.2286 3.7398 2.4458 11 6 7.7923 5.1579 2.5565 12 6 9.1408 5.1158 3.2783 13 6 9.7041 6.5339 3.3896 14 7 10.9949 6.4937 4.0812 15 6 11.6922 7.6522 4.2975 16 1 11.2907 8.5956 3.9579 17 6 12.9151 7.6142 4.9533 18 7 13.5855 8.7277 5.1608 19 14 13.6098 5.9825 5.5401 20 1 14.4471 5.3867 4.4682 21 1 14.4403 6.2049 6.7510 22 1 12.4943 5.0587 5.8679 23 6 2.2145 1.7645 -1.4208 24 6 2.5693 0.9542 -2.5043 25 7 2.6481 1.7088 -3.5703 26 7 2.3553 3.0267 -3.1964 27 6 2.3369 4.1910 -4.0853 28 6 2.0927 3.0342 -1.8726 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.6645 3.2515 0.6179 33 1 5.1814 1.9483 2.6120 34 1 6.0104 1.7392 1.0509 35 1 6.0156 4.1977 0.7251 36 1 5.1865 4.4061 2.2863 37 1 7.0931 3.3241 3.4443 38 1 7.9228 3.1154 1.8834 39 1 7.9277 5.5740 1.5582 40 1 7.0980 5.7819 3.1191 41 1 9.0055 4.6996 4.2766 42 1 9.8349 4.4918 2.7154 43 1 9.8392 6.9505 2.3913 44 1 9.0098 7.1576 3.9526 45 1 11.3557 5.6464 4.3859 46 1 14.4402 8.7010 5.6187 47 1 2.7451 -0.1107 -2.4679 48 1 3.3273 4.6454 -4.1093 49 1 2.0571 3.8762 -5.0906 50 1 1.6126 4.9175 -3.7173 51 1 1.8325 3.8987 -1.2800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179144674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:32 Heat of formation + Delta-G solvation = -3.371717 kcal Electronic energy + Delta-G solvation = -28003.371524 eV Core-core repulsion = 23939.867287 eV Total energy + Delta-G solvation = -4063.504238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87544 -40.02743 -37.99252 -36.83744 -35.50205 -34.13459 -33.80990 -32.24721 -31.56560 -30.32530 -28.89064 -27.27093 -27.01085 -25.63389 -23.91509 -22.11618 -21.70290 -21.54245 -21.11195 -20.85049 -20.36877 -17.98143 -17.60336 -17.43642 -16.97767 -16.31059 -16.00411 -15.90851 -15.61685 -15.10998 -14.99210 -14.77206 -14.53126 -14.28316 -13.93149 -13.69026 -13.56438 -13.26871 -13.24051 -13.08710 -13.03744 -12.69046 -12.67475 -12.42542 -11.86919 -11.79617 -11.61821 -11.45888 -11.21285 -11.01439 -10.86473 -10.78883 -10.56433 -10.37391 -10.33808 -10.10103 -10.02252 -9.94091 -9.56841 -9.39385 -8.96628 -8.86807 -7.20110 -5.75024 -3.10061 1.27632 1.94072 2.12778 2.42319 2.50530 3.39513 3.42720 3.46934 3.59540 3.96703 4.19145 4.35133 4.44402 4.52619 4.54083 4.59838 4.61379 4.69750 4.76218 4.86280 4.88170 4.93011 4.96421 5.16020 5.22434 5.25135 5.26599 5.31767 5.32787 5.50011 5.55622 5.58427 5.65839 5.80195 5.87272 6.02349 6.07533 6.09193 6.12517 6.21773 6.24767 6.37454 6.38092 6.56254 6.79410 6.83651 7.13430 7.16822 7.90877 8.02012 8.44447 9.24136 9.96802 10.17168 11.43524 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.001508 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.490679 B =18561.005748 C =19627.609798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.157 3.843 4 H 0.090 0.910 5 C 0.519 3.481 6 O -0.517 6.517 7 N -0.726 5.726 8 C 0.119 3.881 9 C -0.130 4.130 10 C -0.117 4.117 11 C -0.113 4.113 12 C -0.131 4.131 13 C 0.156 3.844 14 N -0.759 5.759 15 C -0.245 4.245 16 H 0.089 0.911 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.886 3.114 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.271 4.271 24 C 0.081 3.919 25 N -0.295 5.295 26 N -0.371 5.371 27 C 0.099 3.901 28 C 0.069 3.931 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.398 0.602 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.187 0.813 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.089 0.911 51 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.636 -13.337 -16.914 39.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.094 3.906 4 H 0.107 0.893 5 C 0.303 3.697 6 O -0.391 6.391 7 N -0.379 5.379 8 C -0.004 4.004 9 C -0.168 4.168 10 C -0.155 4.155 11 C -0.151 4.151 12 C -0.169 4.169 13 C 0.029 3.971 14 N -0.404 5.404 15 C -0.374 4.374 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.584 5.584 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.284 4.284 24 C -0.105 4.105 25 N -0.116 5.116 26 N -0.152 5.152 27 C -0.042 4.042 28 C -0.078 4.078 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.231 0.769 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.203 0.797 48 H 0.097 0.903 49 H 0.109 0.891 50 H 0.108 0.892 51 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -32.896 -13.882 -18.009 39.990 hybrid contribution 0.088 -0.300 1.147 1.189 sum -32.808 -14.182 -16.862 39.520 Atomic orbital electron populations 1.22879 0.80420 1.03295 1.00046 1.88041 1.19798 1.24402 1.94616 1.19867 0.93221 0.86837 0.90656 0.89273 1.20250 0.86118 0.84123 0.79166 1.90741 1.68994 1.29632 1.49753 1.45849 1.22216 1.09271 1.60583 1.21446 0.83590 0.97940 0.97411 1.21815 0.97945 0.95350 1.01648 1.21521 0.95139 0.98144 1.00685 1.21486 0.96868 0.95877 1.00863 1.21785 0.95986 0.98739 1.00372 1.20635 0.87328 0.93631 0.95496 1.42747 1.20803 1.06478 1.70373 1.19091 1.00119 0.87105 1.31128 0.89285 1.24685 0.97277 0.96540 1.00817 1.69707 1.15741 1.25290 1.47628 0.86517 0.78866 0.84548 0.78443 1.21073 1.21705 1.20326 1.20202 1.18052 0.93339 0.96759 1.23763 0.97158 1.00450 0.89162 1.77488 1.23375 0.87288 1.23427 1.48557 1.52768 1.07351 1.06518 1.21939 1.03642 0.84046 0.94612 1.22279 1.00961 0.98800 0.85802 0.93790 0.93815 0.89056 0.76881 0.91225 0.91348 0.91353 0.91228 0.91590 0.91638 0.91965 0.91912 0.92120 0.92124 0.95744 0.95777 0.80706 0.93096 0.79655 0.90293 0.89062 0.89243 0.80602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.81 101.05 1.09 1.25 16 2 O -0.35 -3.21 9.60 -55.09 -0.53 -3.73 16 3 C 0.16 1.15 2.96 -29.03 -0.09 1.06 16 4 H 0.09 0.38 7.79 -51.93 -0.40 -0.02 16 5 C 0.52 5.19 7.17 -10.98 -0.08 5.11 16 6 O -0.52 -7.61 16.51 -14.31 -0.24 -7.85 16 7 N -0.73 -5.34 5.51 -60.29 -0.33 -5.67 16 8 C 0.12 1.00 5.67 -4.04 -0.02 0.97 16 9 C -0.13 -0.93 5.33 -26.73 -0.14 -1.07 16 10 C -0.12 -1.08 5.21 -26.73 -0.14 -1.22 16 11 C -0.11 -1.26 5.21 -26.73 -0.14 -1.40 16 12 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16 13 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 14 N -0.76 -18.68 5.41 -59.91 -0.32 -19.00 16 15 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 16 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 17 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 18 N -0.94 -29.85 13.97 55.49 0.78 -29.07 16 19 Si 0.89 22.55 27.74 -169.99 -4.71 17.84 16 20 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 23 C -0.27 -1.91 5.05 -105.05 -0.53 -2.44 16 24 C 0.08 0.73 11.64 -17.36 -0.20 0.52 16 25 N -0.30 -2.80 12.58 30.62 0.39 -2.42 16 26 N -0.37 -2.36 4.01 -68.16 -0.27 -2.63 16 27 C 0.10 0.25 11.47 59.85 0.69 0.94 16 28 C 0.07 0.34 11.40 -17.22 -0.20 0.14 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.40 1.73 8.47 -40.82 -0.35 1.38 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.36 8.63 5.53 -40.82 -0.23 8.40 16 46 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 47 H 0.19 1.57 8.06 -52.49 -0.42 1.15 16 48 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 49 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 51 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 LS Contribution 426.31 15.07 6.42 6.42 Total: -1.00 -39.06 426.31 -8.03 -47.08 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -9.02 Total: 1.53 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -0.18 Total: -2.50 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.23 Total: -58.79 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.77 Total: -11.58 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -39.06 -8.03 -47.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179144674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.710 kcal (2) G-P(sol) polarization free energy of solvation -39.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds