Wall clock time and date at job start Tue Mar 31 2020 22:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.50704 * 109.47338 * 150.00083 * 3 2 1 6 6 O 1.21282 * 119.99404 * 4.99870 * 5 3 2 7 7 N 1.34773 * 120.00398 * 184.99445 * 5 3 2 8 8 C 1.46496 * 120.00110 * 179.97438 * 7 5 3 9 9 C 1.53003 * 109.47287 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47215 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47043 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46929 * 180.02562 * 12 11 10 14 14 N 1.46498 * 109.46756 * 179.97438 * 13 12 11 15 15 C 1.36943 * 119.99908 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99927 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00056 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00048 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99851 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47430 * 90.00029 * 19 17 15 21 21 H 1.48506 * 109.46639 * 210.00123 * 19 17 15 22 22 H 1.48495 * 109.47260 * 329.99419 * 19 17 15 23 23 C 1.50700 * 109.47377 * 270.00006 * 3 2 1 24 24 C 1.39872 * 126.03635 * 324.69642 * 23 3 2 25 25 N 1.30840 * 108.19913 * 179.81471 * 24 23 3 26 26 N 1.40084 * 108.20939 * 0.43848 * 25 24 23 27 27 C 1.46500 * 126.03832 * 179.73940 * 26 25 24 28 28 C 1.34953 * 107.92235 * 359.71715 * 26 25 24 29 29 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99996 * 0.02562 * 7 5 3 33 33 H 1.09003 * 109.47400 * 300.00751 * 8 7 5 34 34 H 1.08997 * 109.47213 * 60.00247 * 8 7 5 35 35 H 1.08994 * 109.47165 * 300.00204 * 9 8 7 36 36 H 1.08998 * 109.46533 * 60.00167 * 9 8 7 37 37 H 1.09003 * 109.47439 * 300.00273 * 10 9 8 38 38 H 1.09006 * 109.46783 * 60.00144 * 10 9 8 39 39 H 1.09003 * 109.47123 * 300.00340 * 11 10 9 40 40 H 1.08996 * 109.47221 * 60.00292 * 11 10 9 41 41 H 1.09000 * 109.46248 * 299.99541 * 12 11 10 42 42 H 1.08996 * 109.47226 * 59.99853 * 12 11 10 43 43 H 1.09006 * 109.46595 * 299.99311 * 13 12 11 44 44 H 1.08997 * 109.47677 * 59.99194 * 13 12 11 45 45 H 0.96998 * 120.00211 * 359.97438 * 14 13 12 46 46 H 0.96998 * 119.99877 * 180.02562 * 18 17 15 47 47 H 1.07995 * 125.90070 * 359.97438 * 24 23 3 48 48 H 1.08997 * 109.47002 * 269.96924 * 27 26 25 49 49 H 1.08999 * 109.47203 * 29.97934 * 27 26 25 50 50 H 1.08999 * 109.46485 * 149.97430 * 27 26 25 51 51 H 1.07995 * 126.12698 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2640 0.7104 6 8 3.7897 0.2046 1.0914 7 7 4.0254 2.4041 0.9223 8 6 5.3165 2.3638 1.6134 9 6 5.8805 3.7819 1.7235 10 6 7.2286 3.7398 2.4458 11 6 7.7923 5.1579 2.5565 12 6 9.1408 5.1158 3.2783 13 6 9.7041 6.5339 3.3896 14 7 10.9949 6.4937 4.0812 15 6 11.6922 7.6522 4.2975 16 1 11.2907 8.5956 3.9579 17 6 12.9151 7.6142 4.9533 18 7 13.5855 8.7277 5.1608 19 14 13.6098 5.9825 5.5401 20 1 14.4471 5.3867 4.4682 21 1 14.4403 6.2049 6.7510 22 1 12.4943 5.0587 5.8679 23 6 2.2145 1.7645 -1.4208 24 6 2.5693 0.9542 -2.5043 25 7 2.6481 1.7088 -3.5703 26 7 2.3553 3.0267 -3.1964 27 6 2.3369 4.1910 -4.0853 28 6 2.0927 3.0342 -1.8726 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.6645 3.2515 0.6179 33 1 5.1814 1.9483 2.6120 34 1 6.0104 1.7392 1.0509 35 1 6.0156 4.1977 0.7251 36 1 5.1865 4.4061 2.2863 37 1 7.0931 3.3241 3.4443 38 1 7.9228 3.1154 1.8834 39 1 7.9277 5.5740 1.5582 40 1 7.0980 5.7819 3.1191 41 1 9.0055 4.6996 4.2766 42 1 9.8349 4.4918 2.7154 43 1 9.8392 6.9505 2.3913 44 1 9.0098 7.1576 3.9526 45 1 11.3557 5.6464 4.3859 46 1 14.4402 8.7010 5.6187 47 1 2.7451 -0.1107 -2.4679 48 1 3.3273 4.6454 -4.1093 49 1 2.0571 3.8762 -5.0906 50 1 1.6126 4.9175 -3.7173 51 1 1.8325 3.8987 -1.2800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179144674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:31 Heat of formation + Delta-G solvation = -31.709763 kcal Electronic energy + Delta-G solvation = -28004.600354 eV Core-core repulsion = 23939.867287 eV Total energy + Delta-G solvation = -4064.733068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.35861 -40.72537 -38.57074 -37.90209 -36.77651 -35.33621 -34.28745 -33.69561 -32.54610 -31.56647 -29.42808 -28.33491 -27.37490 -26.36936 -25.23787 -23.48583 -22.34005 -22.24771 -22.04009 -21.80120 -21.00079 -19.61240 -18.51066 -18.09987 -17.54446 -17.02289 -16.68748 -16.60111 -16.30101 -16.21308 -15.93763 -15.80506 -15.49399 -15.23790 -15.13664 -14.88660 -14.21810 -14.16335 -14.10630 -13.91514 -13.55979 -13.47488 -13.43792 -13.32955 -13.15785 -12.99810 -12.65472 -12.46105 -12.30469 -12.07780 -11.88143 -11.85169 -11.79820 -11.71502 -11.52721 -11.32685 -11.14637 -10.97464 -10.65319 -10.43622 -10.10171 -9.45801 -9.30850 -8.04717 -5.38342 0.86435 1.37252 1.40715 1.45168 1.48320 1.63659 1.78218 1.94687 2.47306 3.10370 3.26624 3.57032 3.58021 3.81755 3.90172 3.95432 4.03443 4.07650 4.23114 4.23879 4.27292 4.31759 4.32237 4.46793 4.55653 4.60459 4.61775 4.62815 4.74396 4.78724 4.80970 4.85847 4.86352 4.91158 4.98472 5.00635 5.06180 5.15886 5.29123 5.34995 5.45040 5.52584 5.54140 5.56681 5.73867 6.04382 6.13289 6.19974 6.57993 6.66147 7.06567 7.25714 7.83777 8.02672 9.16774 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.001508 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.490679 B =18561.005748 C =19627.609798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.164 3.836 4 H 0.127 0.873 5 C 0.513 3.487 6 O -0.576 6.576 7 N -0.709 5.709 8 C 0.121 3.879 9 C -0.116 4.116 10 C -0.114 4.114 11 C -0.105 4.105 12 C -0.122 4.122 13 C 0.150 3.850 14 N -0.763 5.763 15 C -0.241 4.241 16 H 0.056 0.944 17 C -0.065 4.065 18 N -0.983 5.983 19 Si 0.958 3.042 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.252 1.252 23 C -0.285 4.285 24 C 0.061 3.939 25 N -0.337 5.337 26 N -0.372 5.372 27 C 0.090 3.910 28 C 0.091 3.909 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.416 0.584 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.366 0.634 46 H 0.259 0.741 47 H 0.173 0.827 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.124 0.876 51 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.722 -13.017 -16.931 41.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.304 6.304 3 C 0.101 3.899 4 H 0.144 0.856 5 C 0.299 3.701 6 O -0.454 6.454 7 N -0.363 5.363 8 C -0.003 4.003 9 C -0.154 4.154 10 C -0.152 4.152 11 C -0.143 4.143 12 C -0.159 4.159 13 C 0.024 3.976 14 N -0.409 5.409 15 C -0.372 4.372 16 H 0.074 0.926 17 C -0.257 4.257 18 N -0.634 5.634 19 Si 0.785 3.215 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.176 1.176 23 C -0.298 4.298 24 C -0.125 4.125 25 N -0.159 5.159 26 N -0.153 5.153 27 C -0.050 4.050 28 C -0.058 4.058 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.253 0.747 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.199 0.801 46 H 0.067 0.933 47 H 0.190 0.810 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.142 0.858 51 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -35.041 -13.542 -18.073 41.688 hybrid contribution 0.680 -0.265 1.076 1.300 sum -34.361 -13.807 -16.996 40.746 Atomic orbital electron populations 1.23016 0.78758 1.03941 1.01142 1.88001 1.21749 1.25885 1.94794 1.19894 0.92129 0.87027 0.90805 0.85557 1.20899 0.87024 0.83714 0.78416 1.90710 1.70570 1.31790 1.52352 1.45702 1.21493 1.09577 1.59489 1.21342 0.83763 0.98522 0.96629 1.21684 0.96937 0.94503 1.02244 1.21459 0.96134 0.96651 1.00998 1.21415 0.94836 0.97313 1.00707 1.21710 0.97832 0.95282 1.01121 1.20875 0.85305 0.96895 0.94529 1.42812 1.22196 1.05122 1.70776 1.19097 1.00411 0.87575 1.30120 0.92636 1.25562 0.97842 1.00657 1.01609 1.69890 1.16322 1.28066 1.49104 0.85358 0.78546 0.79938 0.77649 1.20347 1.21985 1.17636 1.20209 1.19455 0.94045 0.96092 1.23763 0.97991 1.00410 0.90294 1.77408 1.25073 0.89169 1.24275 1.48882 1.51788 1.06971 1.07679 1.22268 1.05109 0.83349 0.94247 1.22960 0.98240 0.99293 0.85304 0.93057 0.92150 0.88859 0.74715 0.92248 0.93273 0.90285 0.89449 0.91644 0.92129 0.91390 0.91047 0.91996 0.92097 0.95960 0.95890 0.80130 0.93266 0.81022 0.89675 0.89527 0.85786 0.75750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.81 113.37 1.23 1.49 16 2 O -0.39 -6.98 9.60 -129.99 -1.25 -8.22 16 3 C 0.16 2.13 2.96 29.10 0.09 2.22 16 4 H 0.13 0.62 7.79 -2.39 -0.02 0.60 16 5 C 0.51 9.87 7.17 87.66 0.63 10.50 16 6 O -0.58 -17.51 16.51 15.95 0.26 -17.25 16 7 N -0.71 -8.92 5.51 -463.06 -2.55 -11.47 16 8 C 0.12 1.84 5.67 86.38 0.49 2.33 16 9 C -0.12 -1.28 5.33 30.59 0.16 -1.12 16 10 C -0.11 -1.80 5.21 30.59 0.16 -1.64 16 11 C -0.10 -2.03 5.21 30.60 0.16 -1.87 16 12 C -0.12 -3.35 5.33 30.60 0.16 -3.19 16 13 C 0.15 5.66 6.26 86.38 0.54 6.20 16 14 N -0.76 -36.73 5.41 -343.45 -1.86 -38.59 16 15 C -0.24 -14.17 10.47 84.03 0.88 -13.29 16 16 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 17 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 18 N -0.98 -63.89 13.97 21.65 0.30 -63.58 16 19 Si 0.96 46.17 27.74 68.60 1.90 48.08 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.25 -10.96 6.52 99.48 0.65 -10.31 16 23 C -0.29 -3.57 5.05 -20.14 -0.10 -3.67 16 24 C 0.06 1.12 11.64 85.24 0.99 2.11 16 25 N -0.34 -6.40 12.58 -57.02 -0.72 -7.11 16 26 N -0.37 -3.91 4.01 -369.57 -1.48 -5.40 16 27 C 0.09 0.22 11.47 127.77 1.47 1.68 16 28 C 0.09 0.57 11.40 83.54 0.95 1.52 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.36 8.08 -2.39 -0.02 0.34 16 31 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.42 2.04 8.47 -92.70 -0.79 1.25 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.37 16.69 5.53 -92.71 -0.51 16.18 16 46 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 47 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 48 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 50 H 0.12 -0.55 8.14 -2.39 -0.02 -0.57 16 51 H 0.23 -1.02 8.06 -2.91 -0.02 -1.04 16 Total: -1.00 -88.95 426.31 2.44 -86.51 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.45 Total: 17.21 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 8.27 Total: -0.17 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -6.31 Total: -126.16 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.98 Total: -25.47 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.90 Total: 48.08 kcal Total: -88.95 2.44 -86.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179144674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.801 kcal (2) G-P(sol) polarization free energy of solvation -88.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds