Wall clock time and date at job start Tue Mar 31 2020 22:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46843 * 110.99576 * 2 1 4 4 C 1.53042 * 109.52027 * 174.16205 * 3 2 1 5 5 C 1.53111 * 109.28000 * 59.18275 * 4 3 2 6 6 C 1.53121 * 109.15917 * 302.34643 * 5 4 3 7 7 C 1.46851 * 111.00038 * 235.79232 * 2 1 3 8 8 H 1.09005 * 109.45044 * 65.82313 * 7 2 1 9 9 C 1.50697 * 109.46175 * 305.85545 * 7 2 1 10 10 O 1.21278 * 120.00272 * 339.94569 * 9 7 2 11 11 N 1.34775 * 119.99712 * 159.94484 * 9 7 2 12 12 C 1.47021 * 125.65112 * 359.95981 * 11 9 7 13 13 C 1.54328 * 107.27041 * 181.09397 * 12 11 9 14 14 C 1.55149 * 102.94504 * 22.18856 * 13 12 11 15 15 H 1.09007 * 111.03511 * 82.58839 * 14 13 12 16 16 N 1.46895 * 111.00568 * 206.42308 * 14 13 12 17 17 C 1.46905 * 111.00171 * 267.19729 * 16 14 13 18 18 C 1.50696 * 109.46937 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00259 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99761 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99976 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99986 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99677 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99496 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47399 * 299.99614 * 25 23 21 28 28 H 1.48498 * 109.47295 * 60.00221 * 25 23 21 29 29 C 1.47430 * 125.64605 * 179.97438 * 11 9 7 30 30 H 1.09007 * 109.46909 * 184.20737 * 1 2 3 31 31 H 1.09001 * 109.46886 * 304.20381 * 1 2 3 32 32 H 1.08997 * 109.47448 * 64.21040 * 1 2 3 33 33 H 1.09003 * 109.46202 * 54.14815 * 3 2 1 34 34 H 1.08997 * 109.46118 * 294.17213 * 3 2 1 35 35 H 1.08999 * 109.49977 * 299.23705 * 4 3 2 36 36 H 1.09003 * 109.50012 * 179.12430 * 4 3 2 37 37 H 1.08997 * 109.52186 * 182.44324 * 5 4 3 38 38 H 1.08996 * 109.57510 * 62.27885 * 5 4 3 39 39 H 1.09004 * 109.50315 * 297.71227 * 6 5 4 40 40 H 1.08998 * 109.50375 * 177.59628 * 6 5 4 41 41 H 1.09001 * 109.87944 * 300.51094 * 12 11 9 42 42 H 1.08996 * 109.88532 * 61.67497 * 12 11 9 43 43 H 1.08996 * 110.71584 * 263.82494 * 13 12 11 44 44 H 1.09000 * 110.71968 * 140.55955 * 13 12 11 45 45 H 1.00896 * 110.99861 * 31.15643 * 16 14 13 46 46 H 1.09000 * 109.47082 * 60.00153 * 17 16 14 47 47 H 1.09004 * 109.47143 * 300.00108 * 17 16 14 48 48 H 0.96999 * 120.00043 * 0.02562 * 20 18 17 49 49 H 0.97000 * 119.99719 * 359.97438 * 24 23 21 50 50 H 1.08997 * 110.36612 * 37.00050 * 29 11 9 51 51 H 1.08999 * 110.36595 * 274.67611 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5371 -1.0144 6 6 3.5182 -0.8713 -1.0209 7 6 1.9954 -0.7708 -1.1338 8 1 1.7324 -0.2706 -2.0660 9 6 1.3983 -2.1543 -1.1207 10 8 0.9174 -2.5977 -0.0994 11 7 1.3987 -2.8991 -2.2440 12 6 1.9450 -2.4869 -3.5452 13 6 1.6981 -3.6460 -4.5337 14 6 0.5232 -4.4181 -3.8776 15 1 -0.4333 -3.9544 -4.1195 16 7 0.5351 -5.8321 -4.2751 17 6 -0.3103 -6.0542 -5.4558 18 6 -0.2736 -7.5129 -5.8326 19 8 0.3909 -8.2910 -5.1814 20 7 -0.9801 -7.9530 -6.8927 21 6 -0.9463 -9.2799 -7.2358 22 1 -0.3540 -9.9726 -6.6565 23 6 -1.6743 -9.7335 -8.3291 24 7 -2.3946 -8.8906 -9.0343 25 14 -1.6288 -11.5416 -8.7961 26 1 -2.4829 -11.7660 -9.9901 27 1 -0.2316 -11.9379 -9.1062 28 1 -2.1354 -12.3582 -7.6640 29 6 0.8512 -4.2620 -2.3715 30 1 -0.3633 -1.0250 0.0754 31 1 -0.3633 0.5777 0.8499 32 1 -0.3634 0.4471 -0.9253 33 1 1.5634 1.9257 0.8330 34 1 1.7324 1.8607 -0.9376 35 1 3.7813 0.8568 1.0906 36 1 3.9098 2.3513 0.1311 37 1 5.1997 0.4716 -0.8905 38 1 3.8896 1.0352 -1.9564 39 1 3.7814 -1.3835 -0.0955 40 1 3.9099 -1.4301 -1.8709 41 1 1.4357 -1.5881 -3.8931 42 1 3.0147 -2.2979 -3.4552 43 1 2.5807 -4.2807 -4.6119 44 1 1.4092 -3.2631 -5.5126 45 1 1.4772 -6.1537 -4.4392 46 1 0.0613 -5.4545 -6.2867 47 1 -1.3360 -5.7638 -5.2282 48 1 -1.5118 -7.3308 -7.4133 49 1 -2.4185 -7.9517 -8.7915 50 1 -0.0543 -4.3645 -1.7734 51 1 1.5938 -4.9992 -2.0664 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183648032.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:20 Heat of formation + Delta-G solvation = -57.491712 kcal Electronic energy + Delta-G solvation = -29601.783797 eV Core-core repulsion = 25535.932740 eV Total energy + Delta-G solvation = -4065.851057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87389 -39.16595 -38.35539 -37.47313 -35.00625 -34.16204 -33.83804 -31.90784 -31.13875 -30.53949 -29.01688 -27.25340 -26.13461 -24.60610 -23.73691 -23.29816 -22.94017 -21.12977 -20.37075 -19.74024 -19.38856 -17.95879 -17.63428 -16.73337 -16.51544 -16.12387 -15.50710 -15.45170 -15.22092 -14.90137 -14.73152 -14.59625 -14.23389 -13.88981 -13.80313 -13.72218 -13.50271 -13.44259 -13.09514 -13.05137 -12.79387 -12.61971 -12.32575 -12.14095 -11.98002 -11.78264 -11.69573 -11.49010 -11.32515 -11.23851 -11.19270 -11.01793 -10.95488 -10.83898 -10.21970 -9.89225 -9.81859 -9.57591 -8.89248 -8.68990 -8.57316 -8.21445 -8.06371 -6.78144 -3.91505 2.36700 2.56061 3.29325 3.33896 3.51000 3.54068 3.79946 3.92320 4.05083 4.24536 4.29693 4.38314 4.44914 4.46832 4.61636 4.64196 4.71130 4.79910 4.93148 4.97337 5.03396 5.08507 5.13023 5.14436 5.19865 5.22898 5.23718 5.30886 5.46869 5.47370 5.48019 5.57323 5.64672 5.65995 5.67587 5.75724 5.78686 5.80758 5.83583 5.90637 5.96659 6.02810 6.56419 6.67751 6.99545 7.26242 7.45648 7.77600 7.96503 8.05236 8.56568 8.76371 9.44139 9.83658 10.65205 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034398 B = 0.001740 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.799151 B =16088.435816 C =16228.908454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.521 5.521 3 C 0.056 3.944 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.108 4.108 7 C 0.076 3.924 8 H 0.059 0.941 9 C 0.532 3.468 10 O -0.518 6.518 11 N -0.620 5.620 12 C 0.103 3.897 13 C -0.166 4.166 14 C 0.078 3.922 15 H 0.092 0.908 16 N -0.655 5.655 17 C 0.052 3.948 18 C 0.442 3.558 19 O -0.576 6.576 20 N -0.575 5.575 21 C -0.383 4.383 22 H 0.099 0.901 23 C -0.009 4.009 24 N -0.900 5.900 25 Si 1.091 2.909 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.117 3.883 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.020 0.980 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.355 0.645 46 H 0.045 0.955 47 H 0.087 0.913 48 H 0.376 0.624 49 H 0.261 0.739 50 H 0.083 0.917 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 24.656 11.665 29.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.071 4.071 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.036 4.036 8 H 0.077 0.923 9 C 0.320 3.680 10 O -0.393 6.393 11 N -0.355 5.355 12 C -0.021 4.021 13 C -0.205 4.205 14 C -0.034 4.034 15 H 0.111 0.889 16 N -0.287 5.287 17 C -0.080 4.080 18 C 0.227 3.773 19 O -0.459 6.459 20 N -0.213 5.213 21 C -0.512 4.512 22 H 0.117 0.883 23 C -0.212 4.212 24 N -0.539 5.539 25 Si 0.917 3.083 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.210 1.210 29 C -0.005 4.005 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.038 0.962 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.175 0.825 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.209 0.791 49 H 0.072 0.928 50 H 0.102 0.898 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.582 22.358 12.510 27.353 hybrid contribution 0.508 2.448 -0.801 2.625 sum 10.089 24.807 11.709 29.228 Atomic orbital electron populations 1.22602 0.86430 1.04336 1.00006 1.61640 1.08387 1.13030 1.41575 1.22147 0.95746 0.88545 1.00692 1.21625 0.94315 1.00270 0.99536 1.21573 1.00314 0.95029 0.98744 1.21559 0.91457 0.98153 1.03460 1.21550 0.96541 0.91829 0.93683 0.92285 1.20073 0.79341 0.86575 0.82023 1.90702 1.45331 1.72398 1.30822 1.48505 1.59989 1.17174 1.09880 1.22019 0.98915 0.97990 0.83127 1.23444 1.00462 0.97761 0.98873 1.22743 0.97946 0.88697 0.93970 0.88946 1.59880 1.17262 1.14670 1.36915 1.21703 0.98659 0.96195 0.91476 1.19696 0.84987 0.89133 0.83442 1.90540 1.45086 1.56759 1.53556 1.41932 1.42896 1.09861 1.26584 1.20542 1.31125 0.84521 1.14991 0.88284 1.26522 0.93656 1.08097 0.92893 1.70909 1.38780 1.04381 1.39878 0.83129 0.76692 0.71905 0.76544 1.20411 1.21015 1.20951 1.22163 0.99843 0.82245 0.96283 0.89254 0.91119 0.96184 0.90217 0.94907 0.90748 0.91251 0.91104 0.92012 0.90210 0.90928 0.91478 0.91171 0.89899 0.89770 0.82460 0.93706 0.89511 0.79149 0.92792 0.89824 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.10 60.07 0.55 0.68 16 2 N -0.52 -5.06 4.51 -236.32 -1.07 -6.13 16 3 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16 4 C -0.12 -0.71 6.09 -26.65 -0.16 -0.87 16 5 C -0.12 -0.68 6.00 -26.61 -0.16 -0.84 16 6 C -0.11 -0.82 5.34 -26.65 -0.14 -0.97 16 7 C 0.08 0.70 1.66 -68.88 -0.11 0.58 16 8 H 0.06 0.48 7.46 -51.93 -0.39 0.09 16 9 C 0.53 6.40 6.28 -10.99 -0.07 6.33 16 10 O -0.52 -8.20 14.78 5.56 0.08 -8.11 16 11 N -0.62 -6.57 3.33 -170.51 -0.57 -7.14 16 12 C 0.10 0.79 6.21 -3.06 -0.02 0.77 16 13 C -0.17 -1.40 6.55 -24.90 -0.16 -1.56 16 14 C 0.08 0.88 3.38 -65.56 -0.22 0.65 16 15 H 0.09 1.00 7.83 -51.92 -0.41 0.60 16 16 N -0.66 -9.79 6.03 -105.72 -0.64 -10.43 16 17 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 18 C 0.44 10.16 7.82 -10.99 -0.09 10.08 16 19 O -0.58 -15.50 15.78 5.55 0.09 -15.41 16 20 N -0.57 -14.19 5.28 -10.96 -0.06 -14.25 16 21 C -0.38 -10.66 9.68 -14.93 -0.14 -10.81 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 23 C -0.01 -0.25 5.50 -17.47 -0.10 -0.34 16 24 N -0.90 -24.96 13.68 55.50 0.76 -24.20 16 25 Si 1.09 24.09 29.92 -169.99 -5.09 19.01 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 C 0.12 1.42 6.60 -2.52 -0.02 1.40 16 30 H 0.09 1.09 5.63 -51.93 -0.29 0.80 16 31 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.48 6.65 -51.93 -0.35 0.13 16 41 H 0.07 0.43 7.85 -51.93 -0.41 0.02 16 42 H 0.07 0.44 6.73 -51.93 -0.35 0.09 16 43 H 0.08 0.71 7.75 -51.93 -0.40 0.31 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.35 5.43 7.89 -39.29 -0.31 5.12 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.32 8.09 -51.93 -0.42 0.90 16 48 H 0.38 8.51 6.73 -40.82 -0.27 8.23 16 49 H 0.26 6.92 6.77 -40.82 -0.28 6.65 16 50 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 51 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -34.35 398.51 -9.91 -44.25 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -8.53 Total: 10.11 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.90 Total: 6.30 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -1.57 Total: -62.15 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.17 Total: -23.53 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.09 Total: 19.01 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.35 -9.91 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183648032.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.238 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds