Wall clock time and date at job start Tue Mar 31 2020 22:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46843 * 110.99576 * 2 1 4 4 C 1.53042 * 109.52027 * 174.16205 * 3 2 1 5 5 C 1.53111 * 109.28000 * 59.18275 * 4 3 2 6 6 C 1.53121 * 109.15917 * 302.34643 * 5 4 3 7 7 C 1.46851 * 111.00038 * 235.79232 * 2 1 3 8 8 H 1.09005 * 109.45044 * 65.82313 * 7 2 1 9 9 C 1.50697 * 109.46175 * 305.85545 * 7 2 1 10 10 O 1.21278 * 120.00272 * 339.94569 * 9 7 2 11 11 N 1.34775 * 119.99712 * 159.94484 * 9 7 2 12 12 C 1.47021 * 125.65112 * 359.95981 * 11 9 7 13 13 C 1.54328 * 107.27041 * 181.09397 * 12 11 9 14 14 C 1.55149 * 102.94504 * 22.18856 * 13 12 11 15 15 H 1.09007 * 111.03511 * 82.58839 * 14 13 12 16 16 N 1.46895 * 111.00568 * 206.42308 * 14 13 12 17 17 C 1.46905 * 111.00171 * 267.19729 * 16 14 13 18 18 C 1.50696 * 109.46937 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00259 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99761 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99976 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99986 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99677 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99496 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47399 * 299.99614 * 25 23 21 28 28 H 1.48498 * 109.47295 * 60.00221 * 25 23 21 29 29 C 1.47430 * 125.64605 * 179.97438 * 11 9 7 30 30 H 1.09007 * 109.46909 * 184.20737 * 1 2 3 31 31 H 1.09001 * 109.46886 * 304.20381 * 1 2 3 32 32 H 1.08997 * 109.47448 * 64.21040 * 1 2 3 33 33 H 1.09003 * 109.46202 * 54.14815 * 3 2 1 34 34 H 1.08997 * 109.46118 * 294.17213 * 3 2 1 35 35 H 1.08999 * 109.49977 * 299.23705 * 4 3 2 36 36 H 1.09003 * 109.50012 * 179.12430 * 4 3 2 37 37 H 1.08997 * 109.52186 * 182.44324 * 5 4 3 38 38 H 1.08996 * 109.57510 * 62.27885 * 5 4 3 39 39 H 1.09004 * 109.50315 * 297.71227 * 6 5 4 40 40 H 1.08998 * 109.50375 * 177.59628 * 6 5 4 41 41 H 1.09001 * 109.87944 * 300.51094 * 12 11 9 42 42 H 1.08996 * 109.88532 * 61.67497 * 12 11 9 43 43 H 1.08996 * 110.71584 * 263.82494 * 13 12 11 44 44 H 1.09000 * 110.71968 * 140.55955 * 13 12 11 45 45 H 1.00896 * 110.99861 * 31.15643 * 16 14 13 46 46 H 1.09000 * 109.47082 * 60.00153 * 17 16 14 47 47 H 1.09004 * 109.47143 * 300.00108 * 17 16 14 48 48 H 0.96999 * 120.00043 * 0.02562 * 20 18 17 49 49 H 0.97000 * 119.99719 * 359.97438 * 24 23 21 50 50 H 1.08997 * 110.36612 * 37.00050 * 29 11 9 51 51 H 1.08999 * 110.36595 * 274.67611 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5371 -1.0144 6 6 3.5182 -0.8713 -1.0209 7 6 1.9954 -0.7708 -1.1338 8 1 1.7324 -0.2706 -2.0660 9 6 1.3983 -2.1543 -1.1207 10 8 0.9174 -2.5977 -0.0994 11 7 1.3987 -2.8991 -2.2440 12 6 1.9450 -2.4869 -3.5452 13 6 1.6981 -3.6460 -4.5337 14 6 0.5232 -4.4181 -3.8776 15 1 -0.4333 -3.9544 -4.1195 16 7 0.5351 -5.8321 -4.2751 17 6 -0.3103 -6.0542 -5.4558 18 6 -0.2736 -7.5129 -5.8326 19 8 0.3909 -8.2910 -5.1814 20 7 -0.9801 -7.9530 -6.8927 21 6 -0.9463 -9.2799 -7.2358 22 1 -0.3540 -9.9726 -6.6565 23 6 -1.6743 -9.7335 -8.3291 24 7 -2.3946 -8.8906 -9.0343 25 14 -1.6288 -11.5416 -8.7961 26 1 -2.4829 -11.7660 -9.9901 27 1 -0.2316 -11.9379 -9.1062 28 1 -2.1354 -12.3582 -7.6640 29 6 0.8512 -4.2620 -2.3715 30 1 -0.3633 -1.0250 0.0754 31 1 -0.3633 0.5777 0.8499 32 1 -0.3634 0.4471 -0.9253 33 1 1.5634 1.9257 0.8330 34 1 1.7324 1.8607 -0.9376 35 1 3.7813 0.8568 1.0906 36 1 3.9098 2.3513 0.1311 37 1 5.1997 0.4716 -0.8905 38 1 3.8896 1.0352 -1.9564 39 1 3.7814 -1.3835 -0.0955 40 1 3.9099 -1.4301 -1.8709 41 1 1.4357 -1.5881 -3.8931 42 1 3.0147 -2.2979 -3.4552 43 1 2.5807 -4.2807 -4.6119 44 1 1.4092 -3.2631 -5.5126 45 1 1.4772 -6.1537 -4.4392 46 1 0.0613 -5.4545 -6.2867 47 1 -1.3360 -5.7638 -5.2282 48 1 -1.5118 -7.3308 -7.4133 49 1 -2.4185 -7.9517 -8.7915 50 1 -0.0543 -4.3645 -1.7734 51 1 1.5938 -4.9992 -2.0664 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183648032.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:19 Heat of formation + Delta-G solvation = -84.224715 kcal Electronic energy + Delta-G solvation = -29602.943027 eV Core-core repulsion = 25535.932740 eV Total energy + Delta-G solvation = -4067.010287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69302 -40.42102 -39.66086 -38.43182 -36.55030 -35.74933 -34.46526 -33.17153 -32.61040 -31.39077 -29.95971 -28.05588 -27.48816 -25.87674 -25.00929 -23.94939 -23.62504 -22.02176 -21.55237 -20.94502 -20.17399 -19.98028 -18.56250 -18.04661 -17.64698 -16.94417 -16.80922 -16.48407 -16.13173 -16.08369 -15.83196 -15.51112 -15.39698 -15.33161 -14.78431 -14.62127 -14.34112 -14.25967 -14.13471 -13.94754 -13.85575 -13.67682 -13.35847 -13.21549 -12.98872 -12.86871 -12.70083 -12.68689 -12.43941 -12.38128 -11.95472 -11.91758 -11.89147 -11.77533 -11.64651 -11.52429 -11.35348 -10.70385 -10.42989 -10.10956 -9.75961 -9.40051 -9.33042 -8.92335 -6.06453 1.47803 1.52704 1.55195 1.71918 1.83058 2.00752 2.40709 2.77413 2.88084 3.16832 3.23526 3.36136 3.58617 3.73706 3.77205 3.90839 3.95679 4.00210 4.11207 4.12778 4.18635 4.26158 4.28115 4.37189 4.40262 4.46337 4.48270 4.51747 4.59928 4.70824 4.74742 4.79313 4.81206 4.93665 4.94965 4.98838 5.01390 5.04558 5.16222 5.17525 5.22833 5.43074 5.59408 5.89347 5.90568 5.98029 6.07190 6.28087 6.43425 6.58119 6.74634 7.07570 7.44403 7.92800 8.55531 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034398 B = 0.001740 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.799151 B =16088.435816 C =16228.908454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.114 4.114 6 C -0.106 4.106 7 C 0.082 3.918 8 H 0.079 0.921 9 C 0.526 3.474 10 O -0.568 6.568 11 N -0.617 5.617 12 C 0.101 3.899 13 C -0.156 4.156 14 C 0.084 3.916 15 H 0.102 0.898 16 N -0.675 5.675 17 C 0.069 3.931 18 C 0.440 3.560 19 O -0.619 6.619 20 N -0.586 5.586 21 C -0.411 4.411 22 H 0.072 0.928 23 C -0.042 4.042 24 N -0.916 5.916 25 Si 1.133 2.867 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.275 1.275 29 C 0.118 3.882 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.351 0.649 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.386 0.614 49 H 0.260 0.740 50 H 0.060 0.940 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.299 27.208 10.218 31.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.157 4.157 5 C -0.152 4.152 6 C -0.144 4.144 7 C -0.029 4.029 8 H 0.097 0.903 9 C 0.315 3.685 10 O -0.446 6.446 11 N -0.351 5.351 12 C -0.021 4.021 13 C -0.195 4.195 14 C -0.027 4.027 15 H 0.120 0.880 16 N -0.307 5.307 17 C -0.063 4.063 18 C 0.228 3.772 19 O -0.505 6.505 20 N -0.225 5.225 21 C -0.540 4.540 22 H 0.090 0.910 23 C -0.240 4.240 24 N -0.555 5.555 25 Si 0.953 3.047 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.201 1.201 29 C -0.006 4.006 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.171 0.829 46 H 0.097 0.903 47 H 0.122 0.878 48 H 0.220 0.780 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.570 24.970 11.040 29.277 hybrid contribution 0.226 1.688 -0.248 1.721 sum 10.796 26.658 10.793 30.719 Atomic orbital electron populations 1.22478 0.86901 1.02546 1.00952 1.61621 1.08262 1.14760 1.42340 1.22233 0.96379 0.87055 1.01467 1.21640 0.93611 1.01381 0.99018 1.21574 1.00748 0.93537 0.99303 1.21577 0.90429 0.99613 1.02803 1.21573 0.97145 0.89812 0.94398 0.90299 1.20740 0.78618 0.87654 0.81515 1.90677 1.47547 1.73628 1.32746 1.48560 1.59404 1.16298 1.10887 1.22262 1.00361 0.98371 0.81089 1.23392 0.98921 0.97466 0.99733 1.22681 0.99803 0.86996 0.93239 0.88008 1.59794 1.16933 1.17492 1.36471 1.21551 1.00248 0.91319 0.93155 1.20915 0.82786 0.91729 0.81788 1.90512 1.46444 1.58927 1.54615 1.41979 1.43806 1.09154 1.27553 1.20514 1.31931 0.85908 1.15647 0.90970 1.27784 0.92628 1.11231 0.92355 1.70974 1.39474 1.04704 1.40380 0.82638 0.77438 0.67983 0.76691 1.19724 1.19733 1.20070 1.21992 0.98527 0.83163 0.96869 0.92362 0.90310 0.95059 0.89850 0.93713 0.92239 0.89196 0.90024 0.90428 0.92607 0.89626 0.89163 0.89117 0.89935 0.87665 0.82897 0.90348 0.87772 0.78023 0.92911 0.92182 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.10 127.69 1.16 1.53 16 2 N -0.54 -10.10 4.51 -901.57 -4.07 -14.17 16 3 C 0.06 0.67 5.46 86.33 0.47 1.14 16 4 C -0.12 -1.14 6.09 30.65 0.19 -0.95 16 5 C -0.11 -0.97 6.00 30.67 0.18 -0.79 16 6 C -0.11 -1.42 5.34 30.64 0.16 -1.26 16 7 C 0.08 1.38 1.66 44.19 0.07 1.46 16 8 H 0.08 1.01 7.46 -2.38 -0.02 0.99 16 9 C 0.53 12.59 6.28 87.66 0.55 13.14 16 10 O -0.57 -18.95 14.78 -3.02 -0.04 -19.00 16 11 N -0.62 -12.47 3.33 -811.75 -2.70 -15.17 16 12 C 0.10 1.21 6.21 86.73 0.54 1.75 16 13 C -0.16 -2.13 6.55 31.78 0.21 -1.92 16 14 C 0.08 1.73 3.38 46.31 0.16 1.89 16 15 H 0.10 1.95 7.83 -2.38 -0.02 1.93 16 16 N -0.67 -19.49 6.03 -488.37 -2.95 -22.44 16 17 C 0.07 2.15 6.03 85.55 0.52 2.66 16 18 C 0.44 20.22 7.82 87.66 0.69 20.90 16 19 O -0.62 -34.00 15.78 -3.07 -0.05 -34.04 16 20 N -0.59 -29.05 5.28 -306.98 -1.62 -30.67 16 21 C -0.41 -23.26 9.68 84.04 0.81 -22.44 16 22 H 0.07 4.41 7.16 -2.91 -0.02 4.39 16 23 C -0.04 -2.24 5.50 84.93 0.47 -1.77 16 24 N -0.92 -50.43 13.68 21.66 0.30 -50.13 16 25 Si 1.13 48.21 29.92 68.60 2.05 50.26 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 28 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 29 C 0.12 2.88 6.60 86.86 0.57 3.45 16 30 H 0.06 1.49 5.63 -2.38 -0.01 1.48 16 31 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 32 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 34 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 37 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.09 0.89 6.65 -2.39 -0.02 0.88 16 41 H 0.09 0.74 7.85 -2.39 -0.02 0.72 16 42 H 0.09 0.78 6.73 -2.39 -0.02 0.76 16 43 H 0.08 1.18 7.75 -2.39 -0.02 1.16 16 44 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.35 10.54 7.89 -89.70 -0.71 9.83 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.10 2.92 8.09 -2.38 -0.02 2.90 16 48 H 0.39 17.35 6.73 -92.71 -0.62 16.72 16 49 H 0.26 13.74 6.77 -92.71 -0.63 13.11 16 50 H 0.06 1.72 8.04 -2.39 -0.02 1.70 16 51 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -77.85 398.51 -2.58 -80.42 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -0.25 Total: 36.15 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 6.75 Total: 18.78 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -11.04 Total: -132.57 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -0.09 Total: -53.04 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.05 Total: 50.26 kcal Total: -77.85 -2.58 -80.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183648032.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.800 kcal (2) G-P(sol) polarization free energy of solvation -77.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds