Wall clock time and date at job start Tue Mar 31 2020 22:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46840 * 110.99843 * 2 1 4 4 C 1.53034 * 109.52531 * 185.83807 * 3 2 1 5 5 C 1.53119 * 109.28087 * 300.82493 * 4 3 2 6 6 C 1.50699 * 109.52161 * 177.55694 * 5 4 3 7 7 O 1.21283 * 120.00134 * 326.37927 * 6 5 4 8 8 N 1.34782 * 119.99796 * 146.39170 * 6 5 4 9 9 C 1.47421 * 125.64976 * 175.00141 * 8 6 5 10 10 C 1.54901 * 104.83565 * 155.91413 * 9 8 6 11 11 C 1.55160 * 101.58330 * 37.00755 * 10 9 8 12 12 H 1.08991 * 110.71913 * 83.03763 * 11 10 9 13 13 N 1.46901 * 110.72144 * 206.13734 * 11 10 9 14 14 C 1.46891 * 111.00037 * 273.54564 * 13 11 10 15 15 C 1.50705 * 109.47305 * 179.97438 * 14 13 11 16 16 O 1.21290 * 119.99720 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00169 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00039 * 179.97438 * 17 15 14 19 19 H 1.07996 * 119.99629 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99993 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99826 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00138 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46974 * 59.99742 * 22 20 18 24 24 H 1.48493 * 109.47391 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47212 * 300.00051 * 22 20 18 26 26 C 1.47020 * 125.64777 * 355.04635 * 8 6 5 27 27 C 1.53117 * 109.15757 * 57.65215 * 5 4 3 28 28 C 1.46843 * 111.00141 * 124.21376 * 2 1 3 29 29 H 1.08997 * 109.46906 * 59.99952 * 1 2 3 30 30 H 1.09005 * 109.46615 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46853 * 299.99596 * 1 2 3 32 32 H 1.09003 * 109.46248 * 65.82523 * 3 2 1 33 33 H 1.08997 * 109.46871 * 305.85793 * 3 2 1 34 34 H 1.09004 * 109.50808 * 180.88226 * 4 3 2 35 35 H 1.09007 * 109.49940 * 60.76414 * 4 3 2 36 36 H 1.08997 * 109.52087 * 297.68520 * 5 4 3 37 37 H 1.09003 * 110.36746 * 37.06654 * 9 8 6 38 38 H 1.09008 * 110.45567 * 274.79779 * 9 8 6 39 39 H 1.09004 * 111.00434 * 278.93519 * 10 9 8 40 40 H 1.08995 * 111.04065 * 155.10035 * 10 9 8 41 41 H 1.00908 * 110.99754 * 37.50408 * 13 11 10 42 42 H 1.09001 * 109.47316 * 300.00276 * 14 13 11 43 43 H 1.09000 * 109.47494 * 59.99727 * 14 13 11 44 44 H 0.97002 * 119.99677 * 0.02562 * 17 15 14 45 45 H 0.97005 * 119.99921 * 179.97438 * 21 20 18 46 46 H 1.09007 * 109.88217 * 61.59813 * 26 8 6 47 47 H 1.09003 * 109.88289 * 300.44060 * 26 8 6 48 48 H 1.08993 * 109.50711 * 62.28837 * 27 5 4 49 49 H 1.09002 * 109.50594 * 182.40518 * 27 5 4 50 50 H 1.09000 * 109.46444 * 294.17715 * 28 2 1 51 51 H 1.09000 * 109.46098 * 54.14468 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1189 0.5370 1.0143 6 6 5.6133 0.4464 0.8430 7 8 6.0935 0.3830 -0.2689 8 7 6.4163 0.4357 1.9255 9 6 7.8783 0.2473 1.9089 10 6 8.3787 0.9125 3.2153 11 6 7.2405 0.5497 4.2054 12 1 7.3851 -0.4525 4.6086 13 7 7.1603 1.5376 5.2897 14 6 8.0768 1.1930 6.3847 15 6 7.9673 2.2269 7.4757 16 8 7.2007 3.1588 7.3532 17 7 8.7204 2.1154 8.5878 18 6 8.6211 3.0562 9.5801 19 1 7.9392 3.8865 9.4706 20 6 9.3979 2.9416 10.7264 21 7 10.2274 1.9311 10.8596 22 14 9.2622 4.2231 12.0787 23 1 7.8688 4.2561 12.5913 24 1 10.1883 3.8744 13.1858 25 1 9.6210 5.5573 11.5341 26 6 5.9790 0.6089 3.3184 27 6 3.5182 -0.8714 1.0207 28 6 1.9953 -0.7708 1.1336 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7325 1.8608 0.9376 33 1 1.5634 1.9258 -0.8329 34 1 3.9099 2.3513 -0.1309 35 1 3.7813 0.8568 -1.0907 36 1 3.8897 1.0360 1.9559 37 1 8.3146 0.7410 1.0405 38 1 8.1257 -0.8143 1.9049 39 1 8.4633 1.9927 3.0962 40 1 9.3272 0.4815 3.5355 41 1 7.3423 2.4683 4.9451 42 1 7.8138 0.2135 6.7841 43 1 9.0996 1.1692 6.0086 44 1 9.3332 1.3699 8.6858 45 1 10.7700 1.8512 11.6598 46 1 5.2939 -0.1929 3.5943 47 1 5.4884 1.5751 3.4355 48 1 3.7814 -1.3835 0.0952 49 1 3.9100 -1.4304 1.8706 50 1 1.7326 -0.2710 2.0660 51 1 1.5635 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185400817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:07 Heat of formation + Delta-G solvation = -66.963416 kcal Electronic energy + Delta-G solvation = -29358.455075 eV Core-core repulsion = 25292.193295 eV Total energy + Delta-G solvation = -4066.261781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67198 -39.12177 -38.33878 -37.58259 -34.72893 -33.94018 -33.79473 -31.32783 -31.25037 -30.76621 -29.01828 -27.45186 -26.16238 -24.35728 -23.85577 -23.52668 -22.62352 -21.11142 -20.35613 -19.41258 -19.12142 -17.96865 -17.44126 -16.71139 -16.30247 -16.01238 -15.50707 -15.35108 -15.15724 -14.87798 -14.78487 -14.56067 -14.09505 -13.92056 -13.71708 -13.61297 -13.53354 -13.14888 -12.95471 -12.80183 -12.61003 -12.59096 -12.40379 -12.11228 -11.95775 -11.68499 -11.63284 -11.52620 -11.48157 -11.43930 -11.10868 -11.03452 -10.89849 -10.80617 -10.47622 -10.25644 -9.84771 -9.54588 -8.83411 -8.71028 -8.55628 -8.16809 -8.01141 -6.46033 -3.87112 2.43762 2.73769 3.17002 3.23267 3.27393 3.54562 3.84087 3.89474 4.14215 4.26160 4.36939 4.42574 4.51371 4.57643 4.77274 4.83533 4.88457 4.96484 5.02919 5.06561 5.09012 5.12256 5.13849 5.19345 5.21843 5.28514 5.33315 5.43368 5.46976 5.50264 5.55512 5.56750 5.58591 5.66140 5.70860 5.76636 5.82758 5.84602 5.89761 6.01523 6.12641 6.20237 6.66896 6.69197 7.06516 7.30760 7.49800 7.50947 7.98743 8.01100 8.55947 9.13124 9.48951 10.00010 10.71430 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.001897 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.419275 B =14755.164267 C =15713.143509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.101 4.101 5 C -0.104 4.104 6 C 0.537 3.463 7 O -0.542 6.542 8 N -0.619 5.619 9 C 0.108 3.892 10 C -0.169 4.169 11 C 0.080 3.920 12 H 0.096 0.904 13 N -0.658 5.658 14 C 0.052 3.948 15 C 0.439 3.561 16 O -0.584 6.584 17 N -0.562 5.562 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.108 3.892 27 C -0.102 4.102 28 C 0.057 3.943 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.353 0.647 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.072 0.928 50 H 0.038 0.962 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.774 -7.725 -19.587 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.139 4.139 5 C -0.126 4.126 6 C 0.326 3.674 7 O -0.418 6.418 8 N -0.354 5.354 9 C -0.015 4.015 10 C -0.209 4.209 11 C -0.032 4.032 12 H 0.114 0.886 13 N -0.290 5.290 14 C -0.081 4.081 15 C 0.224 3.776 16 O -0.468 6.468 17 N -0.198 5.198 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.016 4.016 27 C -0.141 4.141 28 C -0.071 4.071 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.174 0.826 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.091 0.909 50 H 0.056 0.944 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.346 -7.685 -20.267 24.945 hybrid contribution 1.047 0.732 1.345 1.855 sum -11.300 -6.953 -18.922 23.110 Atomic orbital electron populations 1.22355 0.87084 1.02147 1.00753 1.61926 1.07685 1.13924 1.43423 1.22109 0.95173 0.89053 1.00832 1.21474 0.93730 1.00010 0.98657 1.21361 0.90989 0.98878 1.01363 1.20281 0.88536 0.75568 0.83031 1.90691 1.76810 1.50171 1.24165 1.48560 1.08107 1.71913 1.06819 1.22142 0.80260 1.00433 0.98627 1.23613 0.99956 1.01833 0.95470 1.22603 0.92464 0.97683 0.90437 0.88581 1.60005 1.55167 1.05436 1.08368 1.21685 0.94456 0.99634 0.92292 1.19775 0.84986 0.88395 0.84415 1.90528 1.40799 1.35261 1.80261 1.41852 1.36933 1.25363 1.15688 1.19651 1.22464 1.05276 0.95647 0.87954 1.25269 0.95985 0.97844 0.98804 1.69602 1.25192 1.30039 1.29384 0.85909 0.78225 0.80334 0.79707 1.19861 1.20962 1.19903 1.22030 0.97303 1.02593 0.79631 1.21491 0.94532 0.94668 1.03374 1.22080 0.94777 0.98581 0.91616 0.91288 0.91317 0.95567 0.94597 0.90292 0.91132 0.89655 0.89272 0.90413 0.91324 0.90232 0.89556 0.82593 0.89431 0.93591 0.77438 0.91777 0.90833 0.90195 0.90229 0.90927 0.94422 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.59 60.07 0.58 0.73 16 2 N -0.54 -4.43 4.91 -242.96 -1.19 -5.62 16 3 C 0.06 0.44 5.46 -3.84 -0.02 0.42 16 4 C -0.10 -0.93 5.06 -26.65 -0.13 -1.06 16 5 C -0.10 -0.98 2.28 -91.65 -0.21 -1.19 16 6 C 0.54 6.42 6.86 -10.98 -0.08 6.34 16 7 O -0.54 -8.31 16.43 5.56 0.09 -8.22 16 8 N -0.62 -6.65 3.33 -170.52 -0.57 -7.21 16 9 C 0.11 1.08 6.93 -2.54 -0.02 1.07 16 10 C -0.17 -1.61 6.63 -24.59 -0.16 -1.77 16 11 C 0.08 0.84 3.24 -65.87 -0.21 0.63 16 12 H 0.10 0.93 7.89 -51.93 -0.41 0.53 16 13 N -0.66 -9.38 5.91 -106.06 -0.63 -10.01 16 14 C 0.05 0.83 6.02 -4.98 -0.03 0.80 16 15 C 0.44 9.88 7.82 -10.98 -0.09 9.80 16 16 O -0.58 -15.30 15.78 5.55 0.09 -15.21 16 17 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 22 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.11 1.07 5.76 -3.06 -0.02 1.05 16 27 C -0.10 -0.85 5.36 -26.65 -0.14 -1.00 16 28 C 0.06 0.43 5.46 -3.84 -0.02 0.41 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.93 7.78 -51.92 -0.40 0.53 16 36 H 0.09 0.77 6.97 -51.93 -0.36 0.41 16 37 H 0.08 0.84 7.99 -51.93 -0.41 0.43 16 38 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.08 0.82 7.81 -51.93 -0.41 0.41 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.35 5.34 8.00 -39.29 -0.31 5.03 16 42 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 43 H 0.05 0.66 8.13 -51.93 -0.42 0.23 16 44 H 0.39 9.16 7.90 -40.82 -0.32 8.83 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.84 7.80 -51.93 -0.41 0.44 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -32.29 406.80 -10.11 -42.41 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -8.88 Total: 10.82 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.80 Total: 8.37 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -1.72 Total: -59.96 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.18 Total: -23.43 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.29 -10.11 -42.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185400817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.558 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds