Wall clock time and date at job start Tue Mar 31 2020 22:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46840 * 110.99843 * 2 1 4 4 C 1.53034 * 109.52531 * 185.83807 * 3 2 1 5 5 C 1.53119 * 109.28087 * 300.82493 * 4 3 2 6 6 C 1.50699 * 109.52161 * 177.55694 * 5 4 3 7 7 O 1.21283 * 120.00134 * 326.37927 * 6 5 4 8 8 N 1.34782 * 119.99796 * 146.39170 * 6 5 4 9 9 C 1.47421 * 125.64976 * 175.00141 * 8 6 5 10 10 C 1.54901 * 104.83565 * 155.91413 * 9 8 6 11 11 C 1.55160 * 101.58330 * 37.00755 * 10 9 8 12 12 H 1.08991 * 110.71913 * 83.03763 * 11 10 9 13 13 N 1.46901 * 110.72144 * 206.13734 * 11 10 9 14 14 C 1.46891 * 111.00037 * 273.54564 * 13 11 10 15 15 C 1.50705 * 109.47305 * 179.97438 * 14 13 11 16 16 O 1.21290 * 119.99720 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00169 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00039 * 179.97438 * 17 15 14 19 19 H 1.07996 * 119.99629 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99993 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99826 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00138 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46974 * 59.99742 * 22 20 18 24 24 H 1.48493 * 109.47391 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47212 * 300.00051 * 22 20 18 26 26 C 1.47020 * 125.64777 * 355.04635 * 8 6 5 27 27 C 1.53117 * 109.15757 * 57.65215 * 5 4 3 28 28 C 1.46843 * 111.00141 * 124.21376 * 2 1 3 29 29 H 1.08997 * 109.46906 * 59.99952 * 1 2 3 30 30 H 1.09005 * 109.46615 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46853 * 299.99596 * 1 2 3 32 32 H 1.09003 * 109.46248 * 65.82523 * 3 2 1 33 33 H 1.08997 * 109.46871 * 305.85793 * 3 2 1 34 34 H 1.09004 * 109.50808 * 180.88226 * 4 3 2 35 35 H 1.09007 * 109.49940 * 60.76414 * 4 3 2 36 36 H 1.08997 * 109.52087 * 297.68520 * 5 4 3 37 37 H 1.09003 * 110.36746 * 37.06654 * 9 8 6 38 38 H 1.09008 * 110.45567 * 274.79779 * 9 8 6 39 39 H 1.09004 * 111.00434 * 278.93519 * 10 9 8 40 40 H 1.08995 * 111.04065 * 155.10035 * 10 9 8 41 41 H 1.00908 * 110.99754 * 37.50408 * 13 11 10 42 42 H 1.09001 * 109.47316 * 300.00276 * 14 13 11 43 43 H 1.09000 * 109.47494 * 59.99727 * 14 13 11 44 44 H 0.97002 * 119.99677 * 0.02562 * 17 15 14 45 45 H 0.97005 * 119.99921 * 179.97438 * 21 20 18 46 46 H 1.09007 * 109.88217 * 61.59813 * 26 8 6 47 47 H 1.09003 * 109.88289 * 300.44060 * 26 8 6 48 48 H 1.08993 * 109.50711 * 62.28837 * 27 5 4 49 49 H 1.09002 * 109.50594 * 182.40518 * 27 5 4 50 50 H 1.09000 * 109.46444 * 294.17715 * 28 2 1 51 51 H 1.09000 * 109.46098 * 54.14468 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1189 0.5370 1.0143 6 6 5.6133 0.4464 0.8430 7 8 6.0935 0.3830 -0.2689 8 7 6.4163 0.4357 1.9255 9 6 7.8783 0.2473 1.9089 10 6 8.3787 0.9125 3.2153 11 6 7.2405 0.5497 4.2054 12 1 7.3851 -0.4525 4.6086 13 7 7.1603 1.5376 5.2897 14 6 8.0768 1.1930 6.3847 15 6 7.9673 2.2269 7.4757 16 8 7.2007 3.1588 7.3532 17 7 8.7204 2.1154 8.5878 18 6 8.6211 3.0562 9.5801 19 1 7.9392 3.8865 9.4706 20 6 9.3979 2.9416 10.7264 21 7 10.2274 1.9311 10.8596 22 14 9.2622 4.2231 12.0787 23 1 7.8688 4.2561 12.5913 24 1 10.1883 3.8744 13.1858 25 1 9.6210 5.5573 11.5341 26 6 5.9790 0.6089 3.3184 27 6 3.5182 -0.8714 1.0207 28 6 1.9953 -0.7708 1.1336 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7325 1.8608 0.9376 33 1 1.5634 1.9258 -0.8329 34 1 3.9099 2.3513 -0.1309 35 1 3.7813 0.8568 -1.0907 36 1 3.8897 1.0360 1.9559 37 1 8.3146 0.7410 1.0405 38 1 8.1257 -0.8143 1.9049 39 1 8.4633 1.9927 3.0962 40 1 9.3272 0.4815 3.5355 41 1 7.3423 2.4683 4.9451 42 1 7.8138 0.2135 6.7841 43 1 9.0996 1.1692 6.0086 44 1 9.3332 1.3699 8.6858 45 1 10.7700 1.8512 11.6598 46 1 5.2939 -0.1929 3.5943 47 1 5.4884 1.5751 3.4355 48 1 3.7814 -1.3835 0.0952 49 1 3.9100 -1.4304 1.8706 50 1 1.7326 -0.2710 2.0660 51 1 1.5635 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185400817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:06 Heat of formation + Delta-G solvation = -91.404845 kcal Electronic energy + Delta-G solvation = -29359.514935 eV Core-core repulsion = 25292.193295 eV Total energy + Delta-G solvation = -4067.321641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53411 -40.23954 -39.62485 -38.62364 -36.15950 -35.49171 -34.61703 -33.24853 -31.97451 -31.66570 -30.01917 -28.09560 -27.68140 -25.68462 -24.89292 -24.17632 -23.36935 -21.98827 -21.12633 -21.05339 -20.01446 -19.87713 -18.35068 -17.76188 -17.57797 -16.92663 -16.73216 -16.33098 -16.09534 -16.05000 -15.89488 -15.59597 -15.48500 -15.17863 -14.75543 -14.58037 -14.26530 -14.11944 -14.02643 -13.78195 -13.57140 -13.47123 -13.40298 -13.26749 -13.15383 -12.95917 -12.66386 -12.53885 -12.43252 -12.38432 -12.31800 -12.14915 -12.11800 -11.87878 -11.64962 -11.48481 -11.46806 -10.77440 -10.33359 -9.99750 -9.72333 -9.32462 -9.28507 -8.45282 -5.93627 1.40728 1.43057 1.51737 1.53370 1.88088 2.07993 2.30255 2.85367 2.98242 3.22451 3.32894 3.49710 3.62574 3.73610 3.78060 3.80603 4.05872 4.14934 4.15070 4.25984 4.28652 4.35082 4.37547 4.45102 4.52960 4.53893 4.55520 4.63912 4.66855 4.69171 4.71986 4.78589 4.82245 4.85811 4.91858 4.95431 5.00387 5.04764 5.05502 5.12169 5.23671 5.34243 5.42420 5.89353 6.10159 6.10698 6.12397 6.32316 6.44236 6.61933 7.07288 7.14480 7.58827 8.14102 8.71598 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.001897 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.419275 B =14755.164267 C =15713.143509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.561 5.561 3 C 0.061 3.939 4 C -0.098 4.098 5 C -0.100 4.100 6 C 0.533 3.467 7 O -0.582 6.582 8 N -0.618 5.618 9 C 0.106 3.894 10 C -0.159 4.159 11 C 0.084 3.916 12 H 0.115 0.885 13 N -0.669 5.669 14 C 0.067 3.933 15 C 0.437 3.563 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.273 1.273 26 C 0.111 3.889 27 C -0.097 4.097 28 C 0.059 3.941 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.346 0.654 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.042 0.958 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.180 -8.739 -19.052 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.286 5.286 3 C -0.067 4.067 4 C -0.136 4.136 5 C -0.121 4.121 6 C 0.323 3.677 7 O -0.463 6.463 8 N -0.351 5.351 9 C -0.016 4.016 10 C -0.199 4.199 11 C -0.027 4.027 12 H 0.133 0.867 13 N -0.301 5.301 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.463 4.463 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.012 4.012 27 C -0.135 4.135 28 C -0.069 4.069 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.166 0.834 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.061 0.939 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.746 -8.728 -19.724 25.054 hybrid contribution 1.162 1.044 1.107 1.914 sum -11.584 -7.685 -18.618 23.235 Atomic orbital electron populations 1.22389 0.85924 1.02811 1.01127 1.61933 1.08835 1.13907 1.43918 1.22060 0.93960 0.89365 1.01345 1.21420 0.94960 0.99571 0.97665 1.21378 0.89229 0.99768 1.01722 1.20735 0.89586 0.74787 0.82603 1.90669 1.77645 1.52227 1.25711 1.48624 1.08455 1.71035 1.06989 1.22213 0.79861 1.01180 0.98393 1.23539 1.00325 1.01311 0.94736 1.22654 0.93041 0.97425 0.89582 0.86737 1.59984 1.54930 1.05919 1.09219 1.21545 0.96385 0.97855 0.90681 1.20942 0.83040 0.88780 0.84820 1.90500 1.42138 1.37348 1.81147 1.41925 1.37773 1.25240 1.16102 1.19610 1.23283 1.05958 0.97460 0.90362 1.26005 0.95322 0.99617 1.00315 1.69659 1.25350 1.30935 1.30052 0.85019 0.78307 0.77963 0.77246 1.19766 1.19607 1.19792 1.22045 0.97329 1.02981 0.78877 1.21458 0.95319 0.93765 1.02988 1.22091 0.93946 0.99200 0.91620 0.90824 0.90540 0.95270 0.94142 0.89611 0.91408 0.91780 0.88200 0.91667 0.89964 0.91187 0.87965 0.83397 0.87190 0.91104 0.76896 0.91341 0.89011 0.90875 0.91931 0.89743 0.93936 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 127.69 1.22 1.50 16 2 N -0.56 -8.43 4.91 -922.60 -4.53 -12.96 16 3 C 0.06 0.91 5.46 86.33 0.47 1.38 16 4 C -0.10 -1.81 5.06 30.65 0.16 -1.66 16 5 C -0.10 -1.80 2.28 -11.46 -0.03 -1.82 16 6 C 0.53 12.57 6.86 87.66 0.60 13.17 16 7 O -0.58 -18.27 16.43 -3.04 -0.05 -18.32 16 8 N -0.62 -12.49 3.33 -811.78 -2.70 -15.19 16 9 C 0.11 1.97 6.93 86.85 0.60 2.57 16 10 C -0.16 -2.69 6.63 31.98 0.21 -2.48 16 11 C 0.08 1.53 3.24 46.11 0.15 1.68 16 12 H 0.11 1.76 7.89 -2.39 -0.02 1.74 16 13 N -0.67 -17.76 5.91 -489.46 -2.89 -20.65 16 14 C 0.07 2.00 6.02 85.56 0.52 2.52 16 15 C 0.44 19.48 7.82 87.66 0.69 20.17 16 16 O -0.62 -33.06 15.78 -3.06 -0.05 -33.11 16 17 N -0.57 -28.11 5.29 -306.99 -1.62 -29.74 16 18 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 19 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 21 N -0.92 -48.39 13.05 21.66 0.28 -48.10 16 22 Si 0.99 42.07 29.55 68.60 2.03 44.10 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 C 0.11 1.95 5.76 86.73 0.50 2.45 16 27 C -0.10 -1.51 5.36 30.65 0.16 -1.34 16 28 C 0.06 0.79 5.46 86.33 0.47 1.26 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.72 8.09 -2.38 -0.02 0.70 16 31 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 1.14 8.12 -2.39 -0.02 1.13 16 34 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.06 1.46 7.78 -2.38 -0.02 1.44 16 36 H 0.10 1.59 6.97 -2.39 -0.02 1.57 16 37 H 0.06 1.39 7.99 -2.39 -0.02 1.37 16 38 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.07 1.35 7.81 -2.38 -0.02 1.33 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.35 10.11 8.00 -89.69 -0.72 9.39 16 42 H 0.11 2.84 8.08 -2.39 -0.02 2.82 16 43 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 44 H 0.40 18.37 7.90 -92.71 -0.73 17.64 16 45 H 0.28 13.73 8.31 -92.70 -0.77 12.96 16 46 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.07 1.43 7.80 -2.39 -0.02 1.41 16 48 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 50 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 Total: -1.00 -70.57 406.80 -3.05 -73.61 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.52 Total: 38.79 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 7.01 Total: 21.58 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -11.46 Total: -126.64 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.10 Total: -51.44 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -70.57 -3.05 -73.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185400817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.791 kcal (2) G-P(sol) polarization free energy of solvation -70.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds