Wall clock time and date at job start Tue Mar 31 2020 22:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48560 * 111.00091 * 2 1 4 4 C 1.54380 * 104.59384 * 200.95963 * 3 2 1 5 5 C 1.54258 * 105.06236 * 23.85440 * 4 3 2 6 6 H 1.08993 * 110.32480 * 241.00038 * 5 4 3 7 7 C 1.53004 * 110.32444 * 118.89316 * 5 4 3 8 8 C 1.50693 * 109.47064 * 174.99998 * 7 5 4 9 9 O 1.21278 * 120.00352 * 0.02562 * 8 7 5 10 10 N 1.34778 * 119.99827 * 179.97438 * 8 7 5 11 11 C 1.47486 * 125.59520 * 359.92993 * 10 8 7 12 12 C 1.54323 * 107.03754 * 181.08732 * 11 10 8 13 13 C 1.55153 * 103.10236 * 22.24109 * 12 11 10 14 14 H 1.09003 * 111.00505 * 82.48412 * 13 12 11 15 15 N 1.46898 * 111.00907 * 206.33611 * 13 12 11 16 16 C 1.46899 * 110.99962 * 273.55030 * 15 13 12 17 17 C 1.50704 * 109.47278 * 179.97438 * 16 15 13 18 18 O 1.21291 * 119.99681 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00026 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99758 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00355 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99725 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00195 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99728 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47348 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46852 * 119.99893 * 24 22 20 27 27 H 1.48502 * 109.47176 * 239.99555 * 24 22 20 28 28 C 1.47428 * 125.64750 * 180.02562 * 10 8 7 29 29 C 1.48562 * 111.00116 * 244.58495 * 2 1 3 30 30 H 1.09004 * 109.47134 * 60.12306 * 1 2 3 31 31 H 1.08998 * 109.47076 * 180.12396 * 1 2 3 32 32 H 1.09005 * 109.46672 * 300.12815 * 1 2 3 33 33 H 1.09004 * 110.41026 * 82.18736 * 3 2 1 34 34 H 1.08999 * 110.41427 * 319.73870 * 3 2 1 35 35 H 1.08996 * 110.32640 * 264.95334 * 4 3 2 36 36 H 1.09003 * 110.32043 * 142.75373 * 4 3 2 37 37 H 1.09000 * 109.47125 * 55.00023 * 7 5 4 38 38 H 1.09000 * 109.46948 * 295.00555 * 7 5 4 39 39 H 1.09000 * 110.02886 * 61.72083 * 11 10 8 40 40 H 1.09005 * 109.96368 * 300.40940 * 11 10 8 41 41 H 1.09002 * 110.72057 * 263.78860 * 12 11 10 42 42 H 1.09003 * 110.71837 * 140.69433 * 12 11 10 43 43 H 1.00899 * 110.99724 * 37.49740 * 15 13 12 44 44 H 1.09001 * 109.47088 * 299.99399 * 16 15 13 45 45 H 1.08997 * 109.47622 * 59.99326 * 16 15 13 46 46 H 0.97000 * 120.00046 * 0.02562 * 19 17 16 47 47 H 0.97004 * 120.00132 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.36462 * 36.99691 * 28 10 8 49 49 H 1.08998 * 110.36847 * 274.66899 * 28 10 8 50 50 H 1.09000 * 110.40967 * 40.25540 * 29 2 1 51 51 H 1.09006 * 110.40741 * 277.82278 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 1 4.1496 -0.7686 -0.9363 7 6 3.7947 0.2400 -2.8184 8 6 3.9097 -1.0563 -3.5781 9 8 3.7280 -2.1114 -3.0083 10 7 4.2135 -1.0431 -4.8911 11 6 4.4560 0.1633 -5.7041 12 6 4.7384 -0.3117 -7.1450 13 6 4.0823 -1.7170 -7.1871 14 1 3.0116 -1.6428 -7.3774 15 7 4.7346 -2.5730 -8.1869 16 6 4.1405 -2.3767 -9.5160 17 6 4.8340 -3.2689 -10.5131 18 8 5.7344 -3.9970 -10.1519 19 7 4.4532 -3.2585 -11.8058 20 6 5.0838 -4.0704 -12.7128 21 1 5.8861 -4.7181 -12.3914 22 6 4.6915 -4.0593 -14.0457 23 7 3.7158 -3.2709 -14.4369 24 14 5.5513 -5.1652 -15.2816 25 1 6.6071 -5.9501 -14.5929 26 1 4.5623 -6.0921 -15.8882 27 1 6.1673 -4.3329 -16.3460 28 6 4.3564 -2.2314 -5.7520 29 6 2.0014 -0.5952 -1.2527 30 1 -0.3633 0.5119 -0.8911 31 1 -0.3633 -1.0276 0.0022 32 1 -0.3633 0.5159 0.8889 33 1 2.0080 1.7916 1.0121 34 1 1.4099 2.0212 -0.6602 35 1 4.1483 1.1748 0.2934 36 1 3.6937 2.0996 -1.1698 37 1 4.7445 0.7729 -2.8632 38 1 3.0122 0.8542 -3.2639 39 1 5.3178 0.7071 -5.3173 40 1 3.5743 0.8042 -5.6912 41 1 5.8112 -0.3813 -7.3248 42 1 4.2699 0.3545 -7.8695 43 1 5.7301 -2.4100 -8.2083 44 1 3.0801 -2.6266 -9.4804 45 1 4.2585 -1.3357 -9.8167 46 1 3.7329 -2.6765 -12.0946 47 1 3.4416 -3.2634 -15.3674 48 1 3.6249 -2.9906 -5.4750 49 1 5.3671 -2.6330 -5.6797 50 1 1.4098 -0.2712 -2.1089 51 1 2.0078 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187106286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:43 Heat of formation + Delta-G solvation = -62.414691 kcal Electronic energy + Delta-G solvation = -28824.014462 eV Core-core repulsion = 24757.949929 eV Total energy + Delta-G solvation = -4066.064533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.53036 -39.29257 -38.39270 -37.60829 -34.78881 -33.85602 -33.72199 -31.30951 -30.87821 -30.21179 -29.09275 -27.64078 -26.20320 -25.20229 -23.89769 -23.23052 -21.58396 -21.08989 -20.50124 -19.39958 -19.29110 -17.95900 -17.50494 -16.73775 -16.25818 -16.15871 -15.79549 -15.50656 -15.09998 -14.95262 -14.55990 -14.52450 -14.13825 -13.93513 -13.74661 -13.64205 -13.35438 -13.15619 -12.98249 -12.79397 -12.53576 -12.50903 -12.32965 -12.05955 -11.86167 -11.75971 -11.68167 -11.53928 -11.51565 -11.36120 -11.23373 -11.08307 -10.98082 -10.86307 -10.36332 -10.25411 -9.98221 -9.55265 -8.87969 -8.87071 -8.52269 -8.14327 -7.99680 -6.45023 -3.85851 2.43737 2.68871 3.14401 3.25425 3.32728 3.66402 3.86058 3.97373 4.07300 4.20450 4.23174 4.38221 4.44253 4.48470 4.62578 4.73425 4.78689 4.93297 5.00483 5.03765 5.04730 5.06618 5.10951 5.18108 5.20767 5.23156 5.26459 5.30493 5.38072 5.47710 5.51453 5.53826 5.62811 5.67060 5.71249 5.81612 5.85939 5.87812 5.91646 5.96937 6.03978 6.22434 6.45462 6.62810 7.08599 7.29393 7.52587 7.53189 7.96703 8.03034 8.57395 9.14749 9.50443 10.01551 10.72678 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.032954 B = 0.001567 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.461051 B =17861.643365 C =17978.396601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.518 5.518 3 C 0.030 3.970 4 C -0.121 4.121 5 C -0.077 4.077 6 H 0.091 0.909 7 C -0.129 4.129 8 C 0.526 3.474 9 O -0.535 6.535 10 N -0.622 5.622 11 C 0.105 3.895 12 C -0.169 4.169 13 C 0.079 3.921 14 H 0.094 0.906 15 N -0.656 5.656 16 C 0.052 3.948 17 C 0.439 3.561 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.116 3.884 29 C 0.043 3.957 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.354 0.646 44 H 0.087 0.913 45 H 0.046 0.954 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.084 0.916 49 H 0.074 0.926 50 H 0.040 0.960 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 15.817 24.028 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.242 5.242 3 C -0.098 4.098 4 C -0.159 4.159 5 C -0.096 4.096 6 H 0.109 0.891 7 C -0.169 4.169 8 C 0.315 3.685 9 O -0.411 6.411 10 N -0.357 5.357 11 C -0.018 4.018 12 C -0.209 4.209 13 C -0.033 4.033 14 H 0.112 0.888 15 N -0.287 5.287 16 C -0.080 4.080 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.007 4.007 29 C -0.085 4.085 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.174 0.826 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.058 0.942 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.316 13.901 25.078 28.996 hybrid contribution -0.103 1.360 -2.052 2.464 sum -4.419 15.261 23.026 27.976 Atomic orbital electron populations 1.22501 0.88002 1.02399 1.00631 1.65387 1.08198 1.15036 1.35598 1.23141 0.95224 0.90400 1.01080 1.22400 0.96761 0.97093 0.99695 1.21659 0.97823 0.97342 0.92820 0.89108 1.21819 1.03933 0.95603 0.95582 1.20327 0.76293 0.91575 0.80312 1.90724 1.49926 1.33119 1.67341 1.48648 1.69975 1.08586 1.08522 1.22056 1.00908 0.87770 0.91114 1.23468 1.02440 0.99396 0.95569 1.22744 0.99360 0.89212 0.91983 0.88800 1.59920 1.08995 1.55157 1.04652 1.21687 0.99783 0.97844 0.88705 1.19780 0.87170 0.87302 0.83268 1.90535 1.33066 1.44256 1.78815 1.41861 1.33553 1.38332 1.06203 1.19765 1.16335 1.18849 0.87968 0.87818 1.25266 0.96748 0.97890 0.98015 1.69615 1.28196 1.38496 1.17970 0.85796 0.79138 0.79521 0.79871 1.19186 1.20723 1.20767 1.22134 1.02779 0.87703 0.88058 1.23195 0.93880 1.01283 0.90137 0.95433 0.91109 0.91347 0.90155 0.93920 0.90617 0.91041 0.88642 0.89106 0.91251 0.91306 0.90072 0.89752 0.82582 0.89471 0.93648 0.77466 0.91906 0.89796 0.90741 0.94177 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.53 60.06 0.57 0.67 16 2 N -0.52 -4.52 5.66 -238.23 -1.35 -5.87 16 3 C 0.03 0.20 6.49 -2.18 -0.01 0.18 16 4 C -0.12 -0.74 6.65 -25.35 -0.17 -0.91 16 5 C -0.08 -0.62 2.66 -89.24 -0.24 -0.86 16 6 H 0.09 0.88 7.91 -51.93 -0.41 0.47 16 7 C -0.13 -0.92 4.08 -27.88 -0.11 -1.03 16 8 C 0.53 5.74 7.65 -10.99 -0.08 5.66 16 9 O -0.53 -7.85 15.20 5.56 0.08 -7.77 16 10 N -0.62 -6.29 3.34 -170.16 -0.57 -6.86 16 11 C 0.11 0.76 6.52 -2.81 -0.02 0.74 16 12 C -0.17 -1.42 6.52 -24.90 -0.16 -1.59 16 13 C 0.08 0.88 3.32 -65.57 -0.22 0.67 16 14 H 0.09 1.03 7.92 -51.93 -0.41 0.61 16 15 N -0.66 -9.81 6.00 -105.73 -0.63 -10.45 16 16 C 0.05 0.86 6.04 -4.97 -0.03 0.83 16 17 C 0.44 10.07 7.82 -10.98 -0.09 9.99 16 18 O -0.58 -15.54 15.78 5.55 0.09 -15.46 16 19 N -0.56 -13.96 5.29 -10.96 -0.06 -14.01 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 24 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.12 1.38 6.60 -2.54 -0.02 1.36 16 29 C 0.04 0.40 5.18 -2.18 -0.01 0.39 16 30 H 0.03 0.19 7.97 -51.93 -0.41 -0.23 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.04 0.26 7.97 -51.93 -0.41 -0.15 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.32 7.71 -51.93 -0.40 -0.08 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.53 7.98 -51.93 -0.41 0.11 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.71 7.81 -51.93 -0.41 0.30 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.35 5.43 8.01 -39.29 -0.31 5.12 16 44 H 0.09 1.34 8.09 -51.93 -0.42 0.91 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.08 1.12 8.04 -51.93 -0.42 0.71 16 49 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.04 0.37 7.51 -51.93 -0.39 -0.02 16 51 H 0.09 1.04 7.74 -51.93 -0.40 0.64 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -33.01 408.87 -10.28 -43.28 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -8.87 Total: 10.43 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.83 Total: 8.19 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -1.88 Total: -60.64 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.17 Total: -23.23 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.01 -10.28 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187106286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.130 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds