Wall clock time and date at job start Tue Mar 31 2020 22:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48560 * 111.00091 * 2 1 4 4 C 1.54380 * 104.59384 * 200.95963 * 3 2 1 5 5 C 1.54258 * 105.06236 * 23.85440 * 4 3 2 6 6 H 1.08993 * 110.32480 * 241.00038 * 5 4 3 7 7 C 1.53004 * 110.32444 * 118.89316 * 5 4 3 8 8 C 1.50693 * 109.47064 * 174.99998 * 7 5 4 9 9 O 1.21278 * 120.00352 * 0.02562 * 8 7 5 10 10 N 1.34778 * 119.99827 * 179.97438 * 8 7 5 11 11 C 1.47486 * 125.59520 * 359.92993 * 10 8 7 12 12 C 1.54323 * 107.03754 * 181.08732 * 11 10 8 13 13 C 1.55153 * 103.10236 * 22.24109 * 12 11 10 14 14 H 1.09003 * 111.00505 * 82.48412 * 13 12 11 15 15 N 1.46898 * 111.00907 * 206.33611 * 13 12 11 16 16 C 1.46899 * 110.99962 * 273.55030 * 15 13 12 17 17 C 1.50704 * 109.47278 * 179.97438 * 16 15 13 18 18 O 1.21291 * 119.99681 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00026 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99758 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00355 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99725 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00195 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99728 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47348 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46852 * 119.99893 * 24 22 20 27 27 H 1.48502 * 109.47176 * 239.99555 * 24 22 20 28 28 C 1.47428 * 125.64750 * 180.02562 * 10 8 7 29 29 C 1.48562 * 111.00116 * 244.58495 * 2 1 3 30 30 H 1.09004 * 109.47134 * 60.12306 * 1 2 3 31 31 H 1.08998 * 109.47076 * 180.12396 * 1 2 3 32 32 H 1.09005 * 109.46672 * 300.12815 * 1 2 3 33 33 H 1.09004 * 110.41026 * 82.18736 * 3 2 1 34 34 H 1.08999 * 110.41427 * 319.73870 * 3 2 1 35 35 H 1.08996 * 110.32640 * 264.95334 * 4 3 2 36 36 H 1.09003 * 110.32043 * 142.75373 * 4 3 2 37 37 H 1.09000 * 109.47125 * 55.00023 * 7 5 4 38 38 H 1.09000 * 109.46948 * 295.00555 * 7 5 4 39 39 H 1.09000 * 110.02886 * 61.72083 * 11 10 8 40 40 H 1.09005 * 109.96368 * 300.40940 * 11 10 8 41 41 H 1.09002 * 110.72057 * 263.78860 * 12 11 10 42 42 H 1.09003 * 110.71837 * 140.69433 * 12 11 10 43 43 H 1.00899 * 110.99724 * 37.49740 * 15 13 12 44 44 H 1.09001 * 109.47088 * 299.99399 * 16 15 13 45 45 H 1.08997 * 109.47622 * 59.99326 * 16 15 13 46 46 H 0.97000 * 120.00046 * 0.02562 * 19 17 16 47 47 H 0.97004 * 120.00132 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.36462 * 36.99691 * 28 10 8 49 49 H 1.08998 * 110.36847 * 274.66899 * 28 10 8 50 50 H 1.09000 * 110.40967 * 40.25540 * 29 2 1 51 51 H 1.09006 * 110.40741 * 277.82278 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 1 4.1496 -0.7686 -0.9363 7 6 3.7947 0.2400 -2.8184 8 6 3.9097 -1.0563 -3.5781 9 8 3.7280 -2.1114 -3.0083 10 7 4.2135 -1.0431 -4.8911 11 6 4.4560 0.1633 -5.7041 12 6 4.7384 -0.3117 -7.1450 13 6 4.0823 -1.7170 -7.1871 14 1 3.0116 -1.6428 -7.3774 15 7 4.7346 -2.5730 -8.1869 16 6 4.1405 -2.3767 -9.5160 17 6 4.8340 -3.2689 -10.5131 18 8 5.7344 -3.9970 -10.1519 19 7 4.4532 -3.2585 -11.8058 20 6 5.0838 -4.0704 -12.7128 21 1 5.8861 -4.7181 -12.3914 22 6 4.6915 -4.0593 -14.0457 23 7 3.7158 -3.2709 -14.4369 24 14 5.5513 -5.1652 -15.2816 25 1 6.6071 -5.9501 -14.5929 26 1 4.5623 -6.0921 -15.8882 27 1 6.1673 -4.3329 -16.3460 28 6 4.3564 -2.2314 -5.7520 29 6 2.0014 -0.5952 -1.2527 30 1 -0.3633 0.5119 -0.8911 31 1 -0.3633 -1.0276 0.0022 32 1 -0.3633 0.5159 0.8889 33 1 2.0080 1.7916 1.0121 34 1 1.4099 2.0212 -0.6602 35 1 4.1483 1.1748 0.2934 36 1 3.6937 2.0996 -1.1698 37 1 4.7445 0.7729 -2.8632 38 1 3.0122 0.8542 -3.2639 39 1 5.3178 0.7071 -5.3173 40 1 3.5743 0.8042 -5.6912 41 1 5.8112 -0.3813 -7.3248 42 1 4.2699 0.3545 -7.8695 43 1 5.7301 -2.4100 -8.2083 44 1 3.0801 -2.6266 -9.4804 45 1 4.2585 -1.3357 -9.8167 46 1 3.7329 -2.6765 -12.0946 47 1 3.4416 -3.2634 -15.3674 48 1 3.6249 -2.9906 -5.4750 49 1 5.3671 -2.6330 -5.6797 50 1 1.4098 -0.2712 -2.1089 51 1 2.0078 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187106286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:42 Heat of formation + Delta-G solvation = -88.498926 kcal Electronic energy + Delta-G solvation = -28825.145559 eV Core-core repulsion = 24757.949929 eV Total energy + Delta-G solvation = -4067.195630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32423 -40.26395 -39.78357 -38.63853 -36.19263 -35.54282 -34.37698 -33.27198 -31.80778 -30.81398 -29.95413 -28.49492 -27.55168 -26.09424 -25.34012 -23.97124 -22.19360 -21.94095 -21.23416 -21.02262 -20.09659 -19.92252 -18.34001 -17.79600 -17.43095 -17.00817 -16.85563 -16.47435 -16.31668 -16.10414 -15.78071 -15.62709 -15.29180 -15.11194 -14.64644 -14.62273 -14.19355 -14.06730 -13.93894 -13.83626 -13.70967 -13.48949 -13.17276 -13.10136 -13.01382 -12.93087 -12.64921 -12.42393 -12.41122 -12.37184 -12.31458 -12.11682 -12.08926 -11.84064 -11.72019 -11.51437 -11.43739 -10.85211 -10.36322 -10.01301 -9.68876 -9.48060 -9.31589 -8.47062 -5.95468 1.36619 1.42429 1.56181 1.63290 1.89543 2.05468 2.29710 2.91203 3.08890 3.20524 3.35313 3.48167 3.64655 3.68974 3.78856 3.86897 3.98122 4.04596 4.25999 4.27707 4.31240 4.36472 4.38699 4.45464 4.49349 4.50968 4.53945 4.59628 4.63878 4.69166 4.75871 4.80387 4.83660 4.88995 4.95389 4.99071 5.03595 5.07181 5.10410 5.22254 5.27261 5.34930 5.41529 5.87098 5.87967 6.05448 6.08729 6.35625 6.52278 6.60266 7.13013 7.15806 7.56561 8.12119 8.70371 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.032954 B = 0.001567 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.461051 B =17861.643365 C =17978.396601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.539 5.539 3 C 0.028 3.972 4 C -0.114 4.114 5 C -0.077 4.077 6 H 0.065 0.935 7 C -0.117 4.117 8 C 0.518 3.482 9 O -0.585 6.585 10 N -0.621 5.621 11 C 0.105 3.895 12 C -0.161 4.161 13 C 0.083 3.917 14 H 0.101 0.899 15 N -0.675 5.675 16 C 0.070 3.930 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.117 3.883 29 C 0.046 3.954 30 H 0.032 0.968 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.349 0.651 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.041 0.959 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 19.068 23.898 30.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.263 5.263 3 C -0.099 4.099 4 C -0.151 4.151 5 C -0.096 4.096 6 H 0.083 0.917 7 C -0.156 4.156 8 C 0.308 3.692 9 O -0.465 6.465 10 N -0.355 5.355 11 C -0.017 4.017 12 C -0.200 4.200 13 C -0.028 4.028 14 H 0.119 0.881 15 N -0.307 5.307 16 C -0.062 4.062 17 C 0.224 3.776 18 O -0.512 6.512 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.195 1.195 28 C -0.007 4.007 29 C -0.082 4.082 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.169 0.831 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.059 0.941 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.707 17.210 24.944 30.668 hybrid contribution 0.000 0.306 -1.935 1.958 sum -4.707 17.515 23.009 29.298 Atomic orbital electron populations 1.22519 0.87375 1.02185 1.01455 1.65353 1.09051 1.16669 1.35229 1.23226 0.95584 0.89230 1.01902 1.22392 0.96432 0.96561 0.99760 1.21608 0.96123 0.97936 0.93983 0.91657 1.21837 1.06156 0.93614 0.94036 1.21127 0.75235 0.92398 0.80411 1.90710 1.52141 1.35239 1.68405 1.48739 1.69356 1.08976 1.08471 1.22298 1.03157 0.86678 0.89607 1.23413 1.02144 0.97380 0.97081 1.22689 0.99637 0.90437 0.90011 0.88056 1.59842 1.08937 1.57350 1.04575 1.21517 0.99497 0.97656 0.87557 1.20933 0.86300 0.86906 0.83499 1.90505 1.35009 1.46125 1.79555 1.41918 1.33827 1.38438 1.06766 1.19697 1.17054 1.20225 0.89428 0.90439 1.26002 0.97183 0.98893 0.99037 1.69665 1.28609 1.38994 1.18706 0.84891 0.78058 0.77909 0.77595 1.19941 1.19747 1.19467 1.21938 1.01123 0.88367 0.89282 1.23054 0.95142 0.99417 0.90601 0.94894 0.91952 0.90127 0.89432 0.92843 0.90510 0.88401 0.85835 0.86654 0.88924 0.88649 0.90325 0.87861 0.83092 0.87861 0.90510 0.76866 0.91295 0.92300 0.92243 0.94077 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.53 127.69 1.22 1.40 16 2 N -0.54 -9.09 5.66 -907.61 -5.14 -14.23 16 3 C 0.03 0.31 6.49 86.45 0.56 0.87 16 4 C -0.11 -1.08 6.65 31.49 0.21 -0.87 16 5 C -0.08 -1.16 2.66 -9.90 -0.03 -1.19 16 6 H 0.06 1.32 7.91 -2.39 -0.02 1.30 16 7 C -0.12 -1.35 4.08 29.85 0.12 -1.23 16 8 C 0.52 10.91 7.65 87.65 0.67 11.58 16 9 O -0.58 -18.07 15.20 -3.02 -0.05 -18.11 16 10 N -0.62 -11.65 3.34 -810.64 -2.71 -14.35 16 11 C 0.10 1.10 6.52 86.64 0.56 1.67 16 12 C -0.16 -2.19 6.52 31.78 0.21 -1.98 16 13 C 0.08 1.74 3.32 46.30 0.15 1.89 16 14 H 0.10 1.99 7.92 -2.39 -0.02 1.97 16 15 N -0.68 -19.80 6.00 -488.43 -2.93 -22.73 16 16 C 0.07 2.20 6.04 85.56 0.52 2.72 16 17 C 0.44 20.15 7.82 87.66 0.69 20.83 16 18 O -0.63 -34.31 15.78 -3.06 -0.05 -34.36 16 19 N -0.57 -28.68 5.29 -306.99 -1.62 -30.31 16 20 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -48.75 13.05 21.66 0.28 -48.46 16 24 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 C 0.12 2.80 6.60 86.85 0.57 3.37 16 29 C 0.05 0.87 5.18 86.45 0.45 1.31 16 30 H 0.03 0.41 7.97 -2.39 -0.02 0.39 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.05 0.49 7.97 -2.39 -0.02 0.47 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 0.44 7.71 -2.39 -0.02 0.42 16 37 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.12 0.83 7.98 -2.39 -0.02 0.81 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.08 1.15 7.81 -2.39 -0.02 1.14 16 42 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.35 10.69 8.01 -89.69 -0.72 9.97 16 44 H 0.10 2.96 8.09 -2.39 -0.02 2.94 16 45 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.40 18.72 7.90 -92.71 -0.73 17.98 16 47 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 48 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 49 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.04 0.74 7.51 -2.39 -0.02 0.72 16 51 H 0.06 1.44 7.74 -2.38 -0.02 1.42 16 Total: -1.00 -75.63 408.87 -3.52 -79.15 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.52 Total: 36.53 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 7.18 Total: 22.24 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -12.11 Total: -130.07 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -0.09 Total: -52.47 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -75.63 -3.52 -79.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187106286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.348 kcal (2) G-P(sol) polarization free energy of solvation -75.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds