Wall clock time and date at job start Tue Mar 31 2020 22:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46896 * 110.99953 * 2 1 4 4 C 1.50702 * 109.47195 * 66.05290 * 3 2 1 5 5 O 1.21290 * 119.99790 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00132 * 179.97438 * 4 3 2 7 7 C 1.37093 * 119.99921 * 179.97438 * 6 4 3 8 8 H 1.08001 * 120.00553 * 0.02562 * 7 6 4 9 9 C 1.38954 * 120.00065 * 179.97438 * 7 6 4 10 10 N 1.31409 * 119.99784 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00100 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46949 * 60.00431 * 11 9 7 13 13 H 1.48504 * 109.47113 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47441 * 300.00519 * 11 9 7 15 15 C 1.46900 * 110.99687 * 236.05117 * 2 1 3 16 16 H 1.08994 * 110.91819 * 64.33930 * 15 2 1 17 17 C 1.55160 * 111.00260 * 300.43810 * 15 2 1 18 18 C 1.54313 * 102.86458 * 206.23213 * 17 15 2 19 19 N 1.47026 * 107.27552 * 22.52293 * 18 17 15 20 20 C 1.34781 * 125.64749 * 180.96746 * 19 18 17 21 21 O 1.21282 * 119.99541 * 179.69305 * 20 19 18 22 22 C 1.50695 * 120.00205 * 359.69840 * 20 19 18 23 23 H 1.09001 * 110.46164 * 42.40948 * 22 20 19 24 24 C 1.54386 * 110.41070 * 279.99763 * 22 20 19 25 25 C 1.54253 * 105.06000 * 217.36917 * 24 22 20 26 26 C 1.54381 * 105.06193 * 0.02562 * 25 24 22 27 27 N 1.48555 * 110.41166 * 164.82682 * 22 20 19 28 28 C 1.46901 * 111.00003 * 277.81518 * 27 22 20 29 29 C 1.47421 * 108.70306 * 0.70905 * 19 18 17 30 30 H 1.09004 * 109.47058 * 189.73480 * 1 2 3 31 31 H 1.09001 * 109.47326 * 309.73145 * 1 2 3 32 32 H 1.09003 * 109.47612 * 69.73449 * 1 2 3 33 33 H 1.09003 * 109.47380 * 186.04758 * 3 2 1 34 34 H 1.09001 * 109.47215 * 306.04764 * 3 2 1 35 35 H 0.97004 * 119.99920 * 0.02562 * 6 4 3 36 36 H 0.97005 * 120.00017 * 179.97438 * 10 9 7 37 37 H 1.08996 * 110.72058 * 324.78679 * 17 15 2 38 38 H 1.08998 * 110.72055 * 87.88678 * 17 15 2 39 39 H 1.09003 * 109.98516 * 263.04973 * 18 17 15 40 40 H 1.08996 * 109.78266 * 141.88216 * 18 17 15 41 41 H 1.09001 * 110.32415 * 98.47245 * 24 22 20 42 42 H 1.09003 * 110.32134 * 336.26365 * 24 22 20 43 43 H 1.09003 * 110.32697 * 118.89944 * 25 24 22 44 44 H 1.09005 * 110.32673 * 241.00348 * 25 24 22 45 45 H 1.09004 * 110.41407 * 142.63356 * 26 25 24 46 46 H 1.09007 * 110.40936 * 265.07066 * 26 25 24 47 47 H 1.09006 * 109.47206 * 304.70981 * 28 27 22 48 48 H 1.09000 * 109.47088 * 64.71029 * 28 27 22 49 49 H 1.08998 * 109.47298 * 184.70675 * 28 27 22 50 50 H 1.08998 * 110.36901 * 94.93721 * 29 19 18 51 51 H 1.08997 * 110.36955 * 217.25968 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0048 1.4454 2.1409 6 7 2.0189 3.3197 1.5238 7 6 1.6925 3.9345 2.7049 8 1 1.1295 3.3989 3.4550 9 6 2.0867 5.2465 2.9374 10 7 2.7721 5.8981 2.0250 11 14 1.6425 6.0839 4.5470 12 1 2.2334 5.3258 5.6789 13 1 2.1752 7.4702 4.5472 14 1 0.1653 6.1218 4.6941 15 6 1.9953 -0.7659 -1.1377 16 1 1.7232 -0.2957 -2.0826 17 6 1.5095 -2.2387 -1.0890 18 6 2.6173 -2.9914 -1.8554 19 7 3.8284 -2.1596 -1.8009 20 6 5.0131 -2.4588 -2.3697 21 8 5.9471 -1.6922 -2.2644 22 6 5.1773 -3.7457 -3.1364 23 1 4.3041 -3.9305 -3.7621 24 6 5.4038 -4.9252 -2.1663 25 6 6.4281 -5.8355 -2.8745 26 6 6.7348 -5.1292 -4.2126 27 7 6.4090 -3.7013 -3.9657 28 6 6.1681 -2.9901 -5.2283 29 6 3.5305 -0.9411 -1.0265 30 1 -0.3633 -1.0129 0.1738 31 1 -0.3634 0.6569 0.7903 32 1 -0.3634 0.3560 -0.9640 33 1 3.0797 1.3444 -0.1083 34 1 1.5610 1.9273 -0.8309 35 1 2.5242 3.8010 0.8500 36 1 3.0470 6.8141 2.1871 37 1 1.4421 -2.5887 -0.0590 38 1 0.5497 -2.3450 -1.5946 39 1 2.3170 -3.1413 -2.8925 40 1 2.8068 -3.9535 -1.3795 41 1 4.4705 -5.4632 -2.0000 42 1 5.8079 -4.5650 -1.2202 43 1 7.3350 -5.9223 -2.2760 44 1 5.9983 -6.8210 -3.0542 45 1 7.7886 -5.2404 -4.4684 46 1 6.1055 -5.5303 -5.0071 47 1 5.3307 -3.4519 -5.7514 48 1 5.9344 -1.9463 -5.0185 49 1 7.0605 -3.0443 -5.8518 50 1 3.8228 -1.0727 0.0153 51 1 4.0426 -0.0817 -1.4593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189389916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:09 Heat of formation + Delta-G solvation = -40.767793 kcal Electronic energy + Delta-G solvation = -30025.493519 eV Core-core repulsion = 25960.367665 eV Total energy + Delta-G solvation = -4065.125853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.65168 -39.23997 -38.26824 -37.32438 -35.44823 -33.81434 -32.61553 -31.31088 -31.13109 -30.02792 -28.57638 -27.84345 -26.05492 -24.97090 -24.28670 -23.01915 -21.91929 -21.36731 -20.26756 -19.34541 -19.02030 -17.84536 -17.67104 -16.75595 -16.33577 -15.88897 -15.79153 -15.11509 -14.73682 -14.65753 -14.48807 -14.27362 -14.22531 -14.14920 -13.79148 -13.64396 -13.37076 -13.07583 -12.95798 -12.71313 -12.56880 -12.29089 -12.12631 -11.92402 -11.87113 -11.76862 -11.51473 -11.46802 -11.37102 -11.25752 -11.10431 -11.01184 -10.94156 -10.76067 -10.42544 -10.19497 -9.84920 -9.45021 -8.84093 -8.75503 -8.46107 -7.98303 -7.89785 -6.39533 -3.80486 2.50734 2.65225 3.21528 3.27368 3.31471 3.64452 3.90554 3.95109 4.09815 4.18721 4.23634 4.36545 4.47807 4.53323 4.68515 4.73628 4.85169 4.99334 5.03014 5.06333 5.09838 5.14618 5.19614 5.22601 5.28337 5.32764 5.37708 5.48245 5.58786 5.60857 5.64156 5.66735 5.69110 5.74556 5.79312 5.88884 5.91247 5.94543 6.05314 6.11271 6.29514 6.38570 6.49701 6.57457 7.19455 7.31603 7.40191 7.56890 8.07727 8.11129 8.63422 9.19723 9.56222 10.07746 10.78079 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.002136 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.592424 B =13108.494878 C =13844.113448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.507 5.507 3 C 0.042 3.958 4 C 0.444 3.556 5 O -0.578 6.578 6 N -0.563 5.563 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.901 5.901 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.069 3.931 16 H 0.054 0.946 17 C -0.122 4.122 18 C 0.103 3.897 19 N -0.620 5.620 20 C 0.536 3.464 21 O -0.514 6.514 22 C 0.049 3.951 23 H 0.072 0.928 24 C -0.112 4.112 25 C -0.123 4.123 26 C 0.032 3.968 27 N -0.492 5.492 28 C 0.015 3.985 29 C 0.114 3.886 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.014 0.986 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.027 0.973 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.083 0.917 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -22.720 -15.931 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.200 5.200 7 C -0.429 4.429 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.542 5.542 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.041 4.041 16 H 0.072 0.928 17 C -0.161 4.161 18 C -0.021 4.021 19 N -0.356 5.356 20 C 0.323 3.677 21 O -0.388 6.388 22 C -0.063 4.063 23 H 0.090 0.910 24 C -0.151 4.151 25 C -0.161 4.161 26 C -0.096 4.096 27 N -0.216 5.216 28 C -0.134 4.134 29 C -0.008 4.008 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.032 0.968 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.046 0.954 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.102 0.898 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.924 -22.448 -14.653 26.966 hybrid contribution -0.877 0.864 -0.958 1.560 sum 2.047 -21.585 -15.611 26.717 Atomic orbital electron populations 1.22510 0.86205 1.02860 1.00702 1.61596 1.08860 1.12892 1.39735 1.21920 1.00863 0.88795 0.97356 1.19667 0.85545 0.82945 0.88876 1.90486 1.44012 1.64646 1.47094 1.41863 1.49293 1.10770 1.18046 1.19639 1.33015 0.95452 0.94779 0.87948 1.25269 0.96792 0.96683 0.99218 1.69606 1.37853 1.12312 1.34466 0.85918 0.78843 0.77927 0.81517 1.19872 1.21003 1.19949 1.22788 0.94031 0.94301 0.92943 0.92795 1.22691 0.97275 0.94026 1.02066 1.22061 0.84879 0.94829 1.00329 1.48442 1.10776 1.22379 1.54047 1.19907 0.81023 0.87438 0.79331 1.90737 1.38525 1.50190 1.59306 1.22602 0.93874 0.93834 0.96025 0.91002 1.22233 0.99958 0.94180 0.98696 1.22292 0.99664 0.98127 0.95994 1.23160 1.01893 0.87602 0.96900 1.65039 1.29138 1.11984 1.15424 1.22542 1.00571 0.99788 0.90490 1.22246 0.94469 0.87169 0.96944 0.91888 0.88549 0.96755 0.89297 0.93354 0.77469 0.91807 0.88947 0.90095 0.91681 0.91142 0.90375 0.90286 0.90481 0.90852 0.89517 0.93630 0.95429 0.90879 0.90760 0.89848 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.90 60.06 0.53 0.91 16 2 N -0.51 -8.05 4.40 -233.74 -1.03 -9.08 16 3 C 0.04 0.75 5.34 -4.98 -0.03 0.72 16 4 C 0.44 10.42 7.42 -10.99 -0.08 10.34 16 5 O -0.58 -15.31 13.96 5.55 0.08 -15.23 16 6 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 11 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 C 0.07 0.85 2.69 -65.56 -0.18 0.68 16 16 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 17 C -0.12 -1.14 5.33 -24.90 -0.13 -1.27 16 18 C 0.10 0.84 6.33 -3.07 -0.02 0.82 16 19 N -0.62 -7.23 3.33 -170.53 -0.57 -7.80 16 20 C 0.54 7.03 6.80 -10.99 -0.07 6.95 16 21 O -0.51 -9.03 16.82 5.56 0.09 -8.94 16 22 C 0.05 0.47 2.03 -67.22 -0.14 0.33 16 23 H 0.07 0.57 7.39 -51.93 -0.38 0.18 16 24 C -0.11 -0.87 6.46 -25.35 -0.16 -1.03 16 25 C -0.12 -0.79 7.00 -25.35 -0.18 -0.96 16 26 C 0.03 0.23 6.49 -2.20 -0.01 0.22 16 27 N -0.49 -5.05 4.92 -231.74 -1.14 -6.18 16 28 C 0.01 0.13 9.41 60.07 0.57 0.70 16 29 C 0.11 1.54 5.45 -2.53 -0.01 1.52 16 30 H 0.06 0.82 7.37 -51.93 -0.38 0.43 16 31 H 0.10 1.82 5.79 -51.93 -0.30 1.52 16 32 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 33 H 0.09 1.50 6.79 -51.93 -0.35 1.14 16 34 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 36 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 40 H 0.07 0.47 7.80 -51.93 -0.41 0.07 16 41 H 0.08 0.44 7.88 -51.93 -0.41 0.03 16 42 H 0.08 0.74 7.85 -51.93 -0.41 0.34 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.27 7.97 -51.92 -0.41 -0.14 16 47 H 0.03 0.20 7.97 -51.93 -0.41 -0.21 16 48 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.08 1.13 7.68 -51.93 -0.40 0.73 16 LS Contribution 402.69 15.07 6.07 6.07 Total: -1.00 -33.91 402.69 -9.77 -43.68 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.76 Total: 7.83 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -0.16 Total: 11.91 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -2.07 Total: -61.49 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.17 Total: -24.17 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.91 -9.77 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189389916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.908 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds