Wall clock time and date at job start Tue Mar 31 2020 22:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46896 * 110.99953 * 2 1 4 4 C 1.50702 * 109.47195 * 66.05290 * 3 2 1 5 5 O 1.21290 * 119.99790 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00132 * 179.97438 * 4 3 2 7 7 C 1.37093 * 119.99921 * 179.97438 * 6 4 3 8 8 H 1.08001 * 120.00553 * 0.02562 * 7 6 4 9 9 C 1.38954 * 120.00065 * 179.97438 * 7 6 4 10 10 N 1.31409 * 119.99784 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00100 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46949 * 60.00431 * 11 9 7 13 13 H 1.48504 * 109.47113 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47441 * 300.00519 * 11 9 7 15 15 C 1.46900 * 110.99687 * 236.05117 * 2 1 3 16 16 H 1.08994 * 110.91819 * 64.33930 * 15 2 1 17 17 C 1.55160 * 111.00260 * 300.43810 * 15 2 1 18 18 C 1.54313 * 102.86458 * 206.23213 * 17 15 2 19 19 N 1.47026 * 107.27552 * 22.52293 * 18 17 15 20 20 C 1.34781 * 125.64749 * 180.96746 * 19 18 17 21 21 O 1.21282 * 119.99541 * 179.69305 * 20 19 18 22 22 C 1.50695 * 120.00205 * 359.69840 * 20 19 18 23 23 H 1.09001 * 110.46164 * 42.40948 * 22 20 19 24 24 C 1.54386 * 110.41070 * 279.99763 * 22 20 19 25 25 C 1.54253 * 105.06000 * 217.36917 * 24 22 20 26 26 C 1.54381 * 105.06193 * 0.02562 * 25 24 22 27 27 N 1.48555 * 110.41166 * 164.82682 * 22 20 19 28 28 C 1.46901 * 111.00003 * 277.81518 * 27 22 20 29 29 C 1.47421 * 108.70306 * 0.70905 * 19 18 17 30 30 H 1.09004 * 109.47058 * 189.73480 * 1 2 3 31 31 H 1.09001 * 109.47326 * 309.73145 * 1 2 3 32 32 H 1.09003 * 109.47612 * 69.73449 * 1 2 3 33 33 H 1.09003 * 109.47380 * 186.04758 * 3 2 1 34 34 H 1.09001 * 109.47215 * 306.04764 * 3 2 1 35 35 H 0.97004 * 119.99920 * 0.02562 * 6 4 3 36 36 H 0.97005 * 120.00017 * 179.97438 * 10 9 7 37 37 H 1.08996 * 110.72058 * 324.78679 * 17 15 2 38 38 H 1.08998 * 110.72055 * 87.88678 * 17 15 2 39 39 H 1.09003 * 109.98516 * 263.04973 * 18 17 15 40 40 H 1.08996 * 109.78266 * 141.88216 * 18 17 15 41 41 H 1.09001 * 110.32415 * 98.47245 * 24 22 20 42 42 H 1.09003 * 110.32134 * 336.26365 * 24 22 20 43 43 H 1.09003 * 110.32697 * 118.89944 * 25 24 22 44 44 H 1.09005 * 110.32673 * 241.00348 * 25 24 22 45 45 H 1.09004 * 110.41407 * 142.63356 * 26 25 24 46 46 H 1.09007 * 110.40936 * 265.07066 * 26 25 24 47 47 H 1.09006 * 109.47206 * 304.70981 * 28 27 22 48 48 H 1.09000 * 109.47088 * 64.71029 * 28 27 22 49 49 H 1.08998 * 109.47298 * 184.70675 * 28 27 22 50 50 H 1.08998 * 110.36901 * 94.93721 * 29 19 18 51 51 H 1.08997 * 110.36955 * 217.25968 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0048 1.4454 2.1409 6 7 2.0189 3.3197 1.5238 7 6 1.6925 3.9345 2.7049 8 1 1.1295 3.3989 3.4550 9 6 2.0867 5.2465 2.9374 10 7 2.7721 5.8981 2.0250 11 14 1.6425 6.0839 4.5470 12 1 2.2334 5.3258 5.6789 13 1 2.1752 7.4702 4.5472 14 1 0.1653 6.1218 4.6941 15 6 1.9953 -0.7659 -1.1377 16 1 1.7232 -0.2957 -2.0826 17 6 1.5095 -2.2387 -1.0890 18 6 2.6173 -2.9914 -1.8554 19 7 3.8284 -2.1596 -1.8009 20 6 5.0131 -2.4588 -2.3697 21 8 5.9471 -1.6922 -2.2644 22 6 5.1773 -3.7457 -3.1364 23 1 4.3041 -3.9305 -3.7621 24 6 5.4038 -4.9252 -2.1663 25 6 6.4281 -5.8355 -2.8745 26 6 6.7348 -5.1292 -4.2126 27 7 6.4090 -3.7013 -3.9657 28 6 6.1681 -2.9901 -5.2283 29 6 3.5305 -0.9411 -1.0265 30 1 -0.3633 -1.0129 0.1738 31 1 -0.3634 0.6569 0.7903 32 1 -0.3634 0.3560 -0.9640 33 1 3.0797 1.3444 -0.1083 34 1 1.5610 1.9273 -0.8309 35 1 2.5242 3.8010 0.8500 36 1 3.0470 6.8141 2.1871 37 1 1.4421 -2.5887 -0.0590 38 1 0.5497 -2.3450 -1.5946 39 1 2.3170 -3.1413 -2.8925 40 1 2.8068 -3.9535 -1.3795 41 1 4.4705 -5.4632 -2.0000 42 1 5.8079 -4.5650 -1.2202 43 1 7.3350 -5.9223 -2.2760 44 1 5.9983 -6.8210 -3.0542 45 1 7.7886 -5.2404 -4.4684 46 1 6.1055 -5.5303 -5.0071 47 1 5.3307 -3.4519 -5.7514 48 1 5.9344 -1.9463 -5.0185 49 1 7.0605 -3.0443 -5.8518 50 1 3.8228 -1.0727 0.0153 51 1 4.0426 -0.0817 -1.4593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189389916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:08 Heat of formation + Delta-G solvation = -67.441636 kcal Electronic energy + Delta-G solvation = -30026.650183 eV Core-core repulsion = 25960.367665 eV Total energy + Delta-G solvation = -4066.282518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.54765 -40.50329 -39.56513 -38.44656 -36.73896 -35.78464 -33.29773 -33.23005 -32.16288 -30.83322 -29.44138 -29.31328 -26.75485 -26.67724 -25.44101 -24.15284 -22.66286 -21.90321 -21.42123 -20.89075 -20.09868 -19.83410 -18.56564 -17.91286 -17.52813 -16.91385 -16.68920 -16.55234 -16.27512 -16.06828 -15.63695 -15.42204 -15.26228 -15.03455 -14.92163 -14.75740 -14.58567 -14.25736 -13.90665 -13.76327 -13.56974 -13.42766 -13.28049 -13.09930 -12.96502 -12.80987 -12.60655 -12.58634 -12.45549 -12.41340 -12.31601 -12.13596 -12.04413 -11.88138 -11.85495 -11.56258 -11.44952 -10.83952 -10.28969 -10.00894 -9.70851 -9.47284 -9.26835 -8.46496 -5.95492 1.39313 1.40828 1.52111 1.55646 1.75641 2.04346 2.27987 2.73113 3.04170 3.19883 3.27639 3.39774 3.57930 3.60867 3.67989 3.94172 3.99087 4.05260 4.16853 4.21435 4.27875 4.31219 4.38090 4.39773 4.43063 4.48078 4.52844 4.56790 4.61830 4.69679 4.74732 4.76864 4.85789 4.89054 4.94508 4.99785 5.01905 5.10419 5.16557 5.18034 5.23897 5.28284 5.40558 5.75573 5.84431 5.97899 6.03775 6.18683 6.49504 6.59586 7.12200 7.14950 7.55560 8.10748 8.70823 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.002136 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.592424 B =13108.494878 C =13844.113448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.524 5.524 3 C 0.055 3.945 4 C 0.444 3.556 5 O -0.610 6.610 6 N -0.576 5.576 7 C -0.331 4.331 8 H 0.081 0.919 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.994 3.006 12 H -0.272 1.272 13 H -0.272 1.272 14 H -0.269 1.269 15 C 0.074 3.926 16 H 0.067 0.933 17 C -0.114 4.114 18 C 0.101 3.899 19 N -0.618 5.618 20 C 0.529 3.471 21 O -0.574 6.574 22 C 0.055 3.945 23 H 0.100 0.900 24 C -0.111 4.111 25 C -0.119 4.119 26 C 0.033 3.967 27 N -0.528 5.528 28 C 0.018 3.982 29 C 0.114 3.886 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.394 0.606 36 H 0.277 0.723 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.049 0.951 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.059 0.941 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -25.239 -17.569 30.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.249 5.249 3 C -0.076 4.076 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.213 5.213 7 C -0.461 4.461 8 H 0.099 0.901 9 C -0.216 4.216 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.198 1.198 13 H -0.196 1.196 14 H -0.194 1.194 15 C -0.035 4.035 16 H 0.085 0.915 17 C -0.152 4.152 18 C -0.021 4.021 19 N -0.353 5.353 20 C 0.318 3.682 21 O -0.452 6.452 22 C -0.057 4.057 23 H 0.117 0.883 24 C -0.149 4.149 25 C -0.157 4.157 26 C -0.094 4.094 27 N -0.253 5.253 28 C -0.130 4.130 29 C -0.010 4.010 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.119 0.881 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.099 0.901 50 H 0.077 0.923 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.598 -25.006 -16.318 29.902 hybrid contribution -0.461 1.594 -0.460 1.722 sum 1.137 -23.412 -16.778 28.826 Atomic orbital electron populations 1.22407 0.85622 1.03467 1.00202 1.61537 1.09502 1.11643 1.42193 1.21734 1.01468 0.90072 0.94351 1.20643 0.83784 0.82187 0.90301 1.90460 1.45040 1.65235 1.48853 1.41959 1.50023 1.11669 1.17688 1.19636 1.34385 0.96389 0.95682 0.90061 1.26085 0.96271 0.96718 1.02477 1.69680 1.38102 1.12697 1.35888 0.84968 0.78719 0.77194 0.77333 1.19754 1.19632 1.19433 1.22804 0.92845 0.95954 0.91926 0.91526 1.22716 0.98965 0.91220 1.02297 1.22347 0.82687 0.94787 1.02290 1.48532 1.11718 1.22065 1.52947 1.20734 0.80434 0.88137 0.78914 1.90701 1.40571 1.52282 1.61614 1.22632 0.94782 0.92015 0.96255 0.88294 1.22286 1.01691 0.93826 0.97125 1.22316 0.99129 0.99038 0.95223 1.23221 1.02359 0.85907 0.97903 1.64969 1.30026 1.14067 1.16202 1.22481 1.01741 0.98352 0.90444 1.22063 0.95465 0.87699 0.95731 0.89380 0.92773 0.94685 0.88622 0.91457 0.77229 0.91352 0.89835 0.87200 0.88655 0.88868 0.87340 0.92848 0.91394 0.88076 0.89571 0.91598 0.93285 0.93595 0.90105 0.92285 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 8.90 127.69 1.14 2.02 16 2 N -0.52 -16.29 4.40 -893.43 -3.93 -20.22 16 3 C 0.06 1.98 5.34 85.56 0.46 2.44 16 4 C 0.44 21.48 7.42 87.66 0.65 22.13 16 5 O -0.61 -33.50 13.96 -3.06 -0.04 -33.54 16 6 N -0.58 -30.40 5.29 -306.99 -1.62 -32.02 16 7 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 9 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 10 N -0.92 -51.20 13.05 21.66 0.28 -50.92 16 11 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 C 0.07 1.69 2.69 46.31 0.12 1.81 16 16 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 17 C -0.11 -1.72 5.33 31.78 0.17 -1.55 16 18 C 0.10 1.27 6.33 86.72 0.55 1.81 16 19 N -0.62 -13.70 3.33 -811.81 -2.70 -16.40 16 20 C 0.53 13.74 6.80 87.65 0.60 14.34 16 21 O -0.57 -21.21 16.82 -3.04 -0.05 -21.26 16 22 C 0.05 0.94 2.03 44.32 0.09 1.03 16 23 H 0.10 1.14 7.39 -2.39 -0.02 1.13 16 24 C -0.11 -1.44 6.46 31.49 0.20 -1.24 16 25 C -0.12 -1.21 7.00 31.49 0.22 -0.99 16 26 C 0.03 0.39 6.49 86.46 0.56 0.96 16 27 N -0.53 -10.21 4.92 -887.08 -4.36 -14.57 16 28 C 0.02 0.31 9.41 127.69 1.20 1.51 16 29 C 0.11 3.10 5.45 86.86 0.47 3.57 16 30 H 0.09 2.07 7.37 -2.39 -0.02 2.06 16 31 H 0.05 2.06 5.79 -2.39 -0.01 2.05 16 32 H 0.03 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.10 3.31 6.79 -2.39 -0.02 3.30 16 34 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 35 H 0.39 20.04 7.90 -92.71 -0.73 19.31 16 36 H 0.28 14.44 8.31 -92.70 -0.77 13.67 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 0.72 7.92 -2.39 -0.02 0.70 16 40 H 0.09 0.82 7.80 -2.39 -0.02 0.80 16 41 H 0.11 0.73 7.88 -2.39 -0.02 0.71 16 42 H 0.05 0.97 7.85 -2.39 -0.02 0.95 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 0.53 7.97 -2.38 -0.02 0.51 16 47 H 0.05 0.58 7.97 -2.38 -0.02 0.56 16 48 H 0.05 1.00 8.05 -2.39 -0.02 0.98 16 49 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.06 1.76 7.68 -2.39 -0.02 1.74 16 Total: -1.00 -78.61 402.69 -2.50 -81.11 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.19 Total: 32.92 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: 7.71 Total: 29.12 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -12.33 Total: -134.12 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.09 Total: -54.80 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -78.61 -2.50 -81.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189389916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.667 kcal (2) G-P(sol) polarization free energy of solvation -78.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds