Wall clock time and date at job start Tue Mar 31 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00051 * 2 1 4 4 C 1.50703 * 109.46984 * 293.94993 * 3 2 1 5 5 O 1.21301 * 119.99662 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00267 * 180.02562 * 4 3 2 7 7 C 1.37096 * 120.00094 * 180.02562 * 6 4 3 8 8 H 1.07991 * 120.00056 * 359.97438 * 7 6 4 9 9 C 1.38952 * 119.99595 * 179.97438 * 7 6 4 10 10 N 1.31416 * 119.99619 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00262 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47201 * 90.00186 * 11 9 7 13 13 H 1.48502 * 109.47157 * 210.00003 * 11 9 7 14 14 H 1.48494 * 109.47294 * 330.00079 * 11 9 7 15 15 C 1.46903 * 110.99661 * 123.94817 * 2 1 3 16 16 H 1.09000 * 110.88632 * 299.73955 * 15 2 1 17 17 C 1.55159 * 111.00227 * 63.61897 * 15 2 1 18 18 C 1.54324 * 102.94280 * 153.61345 * 17 15 2 19 19 N 1.47017 * 107.26763 * 337.80484 * 18 17 15 20 20 C 1.34778 * 125.64359 * 178.90554 * 19 18 17 21 21 O 1.21287 * 120.00006 * 180.02562 * 20 19 18 22 22 C 1.50702 * 120.00338 * 0.02562 * 20 19 18 23 23 H 1.09002 * 109.87651 * 352.95960 * 22 20 19 24 24 C 1.54322 * 109.88750 * 114.15617 * 22 20 19 25 25 C 1.55433 * 103.04282 * 141.69177 * 24 22 20 26 26 C 1.54912 * 101.52189 * 324.36799 * 25 24 22 27 27 N 1.47443 * 109.88913 * 231.92770 * 22 20 19 28 28 C 1.46898 * 110.99770 * 3.85217 * 27 22 20 29 29 C 1.47419 * 108.70724 * 359.16868 * 19 18 17 30 30 H 1.09003 * 109.47443 * 290.71635 * 1 2 3 31 31 H 1.09004 * 109.46681 * 50.71117 * 1 2 3 32 32 H 1.08996 * 109.47517 * 170.71000 * 1 2 3 33 33 H 1.08991 * 109.47454 * 53.95180 * 3 2 1 34 34 H 1.09000 * 109.47063 * 173.95459 * 3 2 1 35 35 H 0.97003 * 119.99316 * 359.97438 * 6 4 3 36 36 H 0.96998 * 119.99625 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.72502 * 35.24584 * 17 15 2 38 38 H 1.09011 * 110.71770 * 271.97638 * 17 15 2 39 39 H 1.09004 * 109.88150 * 218.38892 * 18 17 15 40 40 H 1.09001 * 109.88167 * 97.22441 * 18 17 15 41 41 H 1.08996 * 110.70376 * 260.07474 * 24 22 20 42 42 H 1.08993 * 110.70686 * 23.13529 * 24 22 20 43 43 H 1.08998 * 111.10505 * 206.29907 * 25 24 22 44 44 H 1.09006 * 111.00205 * 82.38920 * 25 24 22 45 45 H 1.09003 * 110.36801 * 278.17695 * 26 25 24 46 46 H 1.09002 * 110.37434 * 155.95332 * 26 25 24 47 47 H 1.08999 * 109.47268 * 289.81013 * 28 27 22 48 48 H 1.08996 * 109.47445 * 49.81688 * 28 27 22 49 49 H 1.09001 * 109.46738 * 169.81596 * 28 27 22 50 50 H 1.09000 * 110.36747 * 142.74225 * 29 19 18 51 51 H 1.08998 * 110.36616 * 265.06366 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0047 1.4454 -2.1409 6 7 2.0189 3.3198 -1.5239 7 6 1.6924 3.9346 -2.7050 8 1 1.1295 3.3989 -3.4549 9 6 2.0858 5.2469 -2.9370 10 7 1.7732 5.8360 -4.0693 11 14 3.0588 6.1736 -1.6395 12 1 4.5113 5.9607 -1.8640 13 1 2.7511 7.6235 -1.7315 14 1 2.6878 5.6735 -0.2914 15 6 1.9954 -0.7659 1.1377 16 1 1.6630 -0.3361 2.0826 17 6 1.5937 -2.2611 1.0350 18 6 2.7143 -2.9747 1.8202 19 7 3.8769 -2.0749 1.8366 20 6 5.0545 -2.3242 2.4428 21 8 5.9482 -1.5058 2.3916 22 6 5.2610 -3.6198 3.1843 23 1 4.3229 -4.1728 3.2326 24 6 6.3373 -4.4663 2.4725 25 6 7.1205 -5.1037 3.6541 26 6 7.0875 -3.9609 4.6994 27 7 5.7521 -3.3451 4.5471 28 6 5.8060 -1.9001 4.8059 29 6 3.5390 -0.8522 1.0857 30 1 -0.3634 0.3635 0.9612 31 1 -0.3633 0.6508 -0.7954 32 1 -0.3634 -1.0141 -0.1659 33 1 1.5612 1.9274 0.8308 34 1 3.0797 1.3444 0.1082 35 1 2.5243 3.8010 -0.8500 36 1 2.0481 6.7520 -4.2314 37 1 1.5836 -2.5872 -0.0050 38 1 0.6246 -2.4331 1.5036 39 1 2.9763 -3.9098 1.3251 40 1 2.3842 -3.1726 2.8400 41 1 5.8755 -5.2374 1.8559 42 1 6.9898 -3.8334 1.8711 43 1 8.1448 -5.3386 3.3647 44 1 6.6091 -5.9904 4.0287 45 1 7.8685 -3.2306 4.4880 46 1 7.2074 -4.3632 5.7054 47 1 6.6077 -1.4551 4.2164 48 1 4.8552 -1.4454 4.5280 49 1 5.9954 -1.7276 5.8653 50 1 3.9845 0.0210 1.5623 51 1 3.8773 -0.9356 0.0529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189389917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:13 Heat of formation + Delta-G solvation = -28.954506 kcal Electronic energy + Delta-G solvation = -30335.781686 eV Core-core repulsion = 26271.168095 eV Total energy + Delta-G solvation = -4064.613591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11517 -39.43689 -38.36874 -37.31561 -35.61619 -33.89791 -32.45001 -31.69858 -31.35692 -30.12209 -28.72250 -28.06710 -25.93676 -25.00435 -24.34258 -22.97276 -21.93644 -21.66032 -20.33834 -19.39463 -19.08970 -18.23658 -17.86187 -16.97474 -16.30774 -16.05649 -15.75933 -15.37217 -15.06132 -14.95811 -14.59984 -14.52720 -14.15464 -14.11014 -13.67428 -13.39145 -13.21138 -13.12478 -13.08354 -12.95061 -12.49414 -12.39885 -12.20314 -12.09820 -11.88344 -11.81641 -11.62257 -11.52384 -11.47803 -11.39354 -11.20491 -11.15094 -11.03861 -10.89841 -10.59462 -10.24417 -9.98139 -9.54452 -8.96935 -8.61657 -8.56788 -8.19117 -8.05911 -6.31704 -3.83048 2.23419 2.61602 3.02763 3.07735 3.15598 3.64798 3.71446 3.81208 3.97737 4.10200 4.16693 4.26550 4.38731 4.49041 4.68687 4.72791 4.82380 4.89142 5.01677 5.03198 5.11053 5.14144 5.21416 5.26931 5.28710 5.35451 5.44020 5.44592 5.47917 5.54813 5.57226 5.60921 5.66843 5.74190 5.77217 5.78546 5.81116 5.82477 5.90548 5.98755 6.02495 6.42397 6.44455 6.55566 7.05025 7.18234 7.25215 7.57515 7.85464 8.13627 8.59268 8.94427 9.41777 9.82061 10.81300 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.002417 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.053359 B =11582.022506 C =12650.924094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.506 5.506 3 C 0.038 3.962 4 C 0.453 3.547 5 O -0.559 6.559 6 N -0.590 5.590 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.042 3.958 10 N -0.881 5.881 11 Si 0.879 3.121 12 H -0.270 1.270 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.122 4.122 18 C 0.100 3.900 19 N -0.613 5.613 20 C 0.518 3.482 21 O -0.537 6.537 22 C 0.056 3.944 23 H 0.103 0.897 24 C -0.129 4.129 25 C -0.126 4.126 26 C 0.037 3.963 27 N -0.510 5.510 28 C 0.006 3.994 29 C 0.110 3.890 30 H 0.016 0.984 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.297 -21.304 19.788 29.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C -0.093 4.093 4 C 0.239 3.761 5 O -0.441 6.441 6 N -0.230 5.230 7 C -0.433 4.433 8 H 0.138 0.862 9 C -0.161 4.161 10 N -0.521 5.521 11 Si 0.705 3.295 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.160 4.160 18 C -0.023 4.023 19 N -0.348 5.348 20 C 0.306 3.694 21 O -0.414 6.414 22 C -0.056 4.056 23 H 0.121 0.879 24 C -0.168 4.168 25 C -0.164 4.164 26 C -0.090 4.090 27 N -0.234 5.234 28 C -0.142 4.142 29 C -0.013 4.013 30 H 0.034 0.966 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.232 -21.517 19.012 29.382 hybrid contribution 0.916 1.805 1.125 2.316 sum 7.148 -19.712 20.138 29.072 Atomic orbital electron populations 1.22534 0.85924 1.03064 1.00876 1.61606 1.09078 1.12545 1.39825 1.21960 1.00921 0.89223 0.97198 1.19568 0.85191 0.82471 0.88884 1.90534 1.42683 1.64113 1.46754 1.42218 1.50923 1.11952 1.17886 1.19417 1.33833 0.96285 0.93740 0.86228 1.25038 0.97848 0.96514 0.96744 1.69622 1.45603 1.13635 1.23213 0.86686 0.80988 0.80483 0.81328 1.19554 1.20174 1.19535 1.22751 0.93881 0.94517 0.92917 0.92727 1.22694 0.97470 0.93732 1.02073 1.22126 0.85678 0.93713 1.00773 1.48525 1.13363 1.19889 1.52975 1.20748 0.80796 0.89046 0.78770 1.90699 1.41441 1.48783 1.60462 1.22648 1.00960 0.93306 0.88656 0.87915 1.22796 0.96854 0.98959 0.98183 1.22746 1.00785 0.98127 0.94723 1.23166 0.89650 0.96131 1.00080 1.64072 1.24533 1.13325 1.21515 1.22934 1.02565 0.87209 1.01502 1.22251 0.94327 0.87313 0.97378 0.96592 0.88460 0.91677 0.93196 0.89232 0.79719 0.91610 0.88875 0.89896 0.90892 0.91073 0.89960 0.90347 0.90276 0.90279 0.92910 0.89737 0.91690 0.92049 0.91716 0.90485 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.97 60.06 0.54 0.88 16 2 N -0.51 -7.60 4.40 -233.88 -1.03 -8.63 16 3 C 0.04 0.64 5.32 -4.97 -0.03 0.61 16 4 C 0.45 10.14 7.42 -10.99 -0.08 10.06 16 5 O -0.56 -14.55 13.96 5.54 0.08 -14.47 16 6 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 7 C -0.30 -8.56 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 9 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 10 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 11 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.27 -5.47 6.52 56.52 0.37 -5.11 16 15 C 0.07 0.79 2.69 -65.68 -0.18 0.62 16 16 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 17 C -0.12 -1.07 5.53 -24.89 -0.14 -1.21 16 18 C 0.10 0.78 5.86 -3.07 -0.02 0.76 16 19 N -0.61 -6.63 3.33 -170.66 -0.57 -7.20 16 20 C 0.52 6.13 4.95 -10.98 -0.05 6.07 16 21 O -0.54 -8.14 14.02 5.55 0.08 -8.06 16 22 C 0.06 0.51 3.64 -67.87 -0.25 0.26 16 23 H 0.10 0.78 6.65 -51.93 -0.35 0.44 16 24 C -0.13 -1.00 6.46 -24.75 -0.16 -1.16 16 25 C -0.13 -0.80 7.10 -24.43 -0.17 -0.97 16 26 C 0.04 0.29 6.72 -2.30 -0.02 0.28 16 27 N -0.51 -4.86 5.44 -232.95 -1.27 -6.12 16 28 C 0.01 0.06 8.19 60.06 0.49 0.55 16 29 C 0.11 1.36 5.24 -2.65 -0.01 1.34 16 30 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 31 H 0.10 1.78 5.79 -51.93 -0.30 1.48 16 32 H 0.06 0.81 7.47 -51.93 -0.39 0.42 16 33 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.09 1.35 6.64 -51.93 -0.34 1.01 16 35 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.46 7.93 -51.93 -0.41 0.05 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.75 7.71 -51.93 -0.40 0.35 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.45 7.62 -51.93 -0.40 0.06 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.81 5.83 -51.93 -0.30 0.51 16 48 H 0.06 0.70 6.91 -51.93 -0.36 0.35 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 51 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 391.77 15.07 5.90 5.90 Total: -1.00 -33.71 391.77 -9.63 -43.35 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.51 Total: 9.06 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -0.32 Total: 10.42 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -2.15 Total: -61.01 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.16 Total: -22.53 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.71 -9.63 -43.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189389917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.392 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds