Wall clock time and date at job start Tue Mar 31 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00051 * 2 1 4 4 C 1.50703 * 109.46984 * 293.94993 * 3 2 1 5 5 O 1.21301 * 119.99662 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00267 * 180.02562 * 4 3 2 7 7 C 1.37096 * 120.00094 * 180.02562 * 6 4 3 8 8 H 1.07991 * 120.00056 * 359.97438 * 7 6 4 9 9 C 1.38952 * 119.99595 * 179.97438 * 7 6 4 10 10 N 1.31416 * 119.99619 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00262 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47201 * 90.00186 * 11 9 7 13 13 H 1.48502 * 109.47157 * 210.00003 * 11 9 7 14 14 H 1.48494 * 109.47294 * 330.00079 * 11 9 7 15 15 C 1.46903 * 110.99661 * 123.94817 * 2 1 3 16 16 H 1.09000 * 110.88632 * 299.73955 * 15 2 1 17 17 C 1.55159 * 111.00227 * 63.61897 * 15 2 1 18 18 C 1.54324 * 102.94280 * 153.61345 * 17 15 2 19 19 N 1.47017 * 107.26763 * 337.80484 * 18 17 15 20 20 C 1.34778 * 125.64359 * 178.90554 * 19 18 17 21 21 O 1.21287 * 120.00006 * 180.02562 * 20 19 18 22 22 C 1.50702 * 120.00338 * 0.02562 * 20 19 18 23 23 H 1.09002 * 109.87651 * 352.95960 * 22 20 19 24 24 C 1.54322 * 109.88750 * 114.15617 * 22 20 19 25 25 C 1.55433 * 103.04282 * 141.69177 * 24 22 20 26 26 C 1.54912 * 101.52189 * 324.36799 * 25 24 22 27 27 N 1.47443 * 109.88913 * 231.92770 * 22 20 19 28 28 C 1.46898 * 110.99770 * 3.85217 * 27 22 20 29 29 C 1.47419 * 108.70724 * 359.16868 * 19 18 17 30 30 H 1.09003 * 109.47443 * 290.71635 * 1 2 3 31 31 H 1.09004 * 109.46681 * 50.71117 * 1 2 3 32 32 H 1.08996 * 109.47517 * 170.71000 * 1 2 3 33 33 H 1.08991 * 109.47454 * 53.95180 * 3 2 1 34 34 H 1.09000 * 109.47063 * 173.95459 * 3 2 1 35 35 H 0.97003 * 119.99316 * 359.97438 * 6 4 3 36 36 H 0.96998 * 119.99625 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.72502 * 35.24584 * 17 15 2 38 38 H 1.09011 * 110.71770 * 271.97638 * 17 15 2 39 39 H 1.09004 * 109.88150 * 218.38892 * 18 17 15 40 40 H 1.09001 * 109.88167 * 97.22441 * 18 17 15 41 41 H 1.08996 * 110.70376 * 260.07474 * 24 22 20 42 42 H 1.08993 * 110.70686 * 23.13529 * 24 22 20 43 43 H 1.08998 * 111.10505 * 206.29907 * 25 24 22 44 44 H 1.09006 * 111.00205 * 82.38920 * 25 24 22 45 45 H 1.09003 * 110.36801 * 278.17695 * 26 25 24 46 46 H 1.09002 * 110.37434 * 155.95332 * 26 25 24 47 47 H 1.08999 * 109.47268 * 289.81013 * 28 27 22 48 48 H 1.08996 * 109.47445 * 49.81688 * 28 27 22 49 49 H 1.09001 * 109.46738 * 169.81596 * 28 27 22 50 50 H 1.09000 * 110.36747 * 142.74225 * 29 19 18 51 51 H 1.08998 * 110.36616 * 265.06366 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0047 1.4454 -2.1409 6 7 2.0189 3.3198 -1.5239 7 6 1.6924 3.9346 -2.7050 8 1 1.1295 3.3989 -3.4549 9 6 2.0858 5.2469 -2.9370 10 7 1.7732 5.8360 -4.0693 11 14 3.0588 6.1736 -1.6395 12 1 4.5113 5.9607 -1.8640 13 1 2.7511 7.6235 -1.7315 14 1 2.6878 5.6735 -0.2914 15 6 1.9954 -0.7659 1.1377 16 1 1.6630 -0.3361 2.0826 17 6 1.5937 -2.2611 1.0350 18 6 2.7143 -2.9747 1.8202 19 7 3.8769 -2.0749 1.8366 20 6 5.0545 -2.3242 2.4428 21 8 5.9482 -1.5058 2.3916 22 6 5.2610 -3.6198 3.1843 23 1 4.3229 -4.1728 3.2326 24 6 6.3373 -4.4663 2.4725 25 6 7.1205 -5.1037 3.6541 26 6 7.0875 -3.9609 4.6994 27 7 5.7521 -3.3451 4.5471 28 6 5.8060 -1.9001 4.8059 29 6 3.5390 -0.8522 1.0857 30 1 -0.3634 0.3635 0.9612 31 1 -0.3633 0.6508 -0.7954 32 1 -0.3634 -1.0141 -0.1659 33 1 1.5612 1.9274 0.8308 34 1 3.0797 1.3444 0.1082 35 1 2.5243 3.8010 -0.8500 36 1 2.0481 6.7520 -4.2314 37 1 1.5836 -2.5872 -0.0050 38 1 0.6246 -2.4331 1.5036 39 1 2.9763 -3.9098 1.3251 40 1 2.3842 -3.1726 2.8400 41 1 5.8755 -5.2374 1.8559 42 1 6.9898 -3.8334 1.8711 43 1 8.1448 -5.3386 3.3647 44 1 6.6091 -5.9904 4.0287 45 1 7.8685 -3.2306 4.4880 46 1 7.2074 -4.3632 5.7054 47 1 6.6077 -1.4551 4.2164 48 1 4.8552 -1.4454 4.5280 49 1 5.9954 -1.7276 5.8653 50 1 3.9845 0.0210 1.5623 51 1 3.8773 -0.9356 0.0529 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189389917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:13 Heat of formation + Delta-G solvation = -56.699634 kcal Electronic energy + Delta-G solvation = -30336.984805 eV Core-core repulsion = 26271.168095 eV Total energy + Delta-G solvation = -4065.816710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93435 -40.69716 -39.68400 -38.26966 -36.81055 -35.84876 -33.77097 -33.11203 -32.26849 -30.89435 -29.54631 -29.46414 -26.72100 -26.61726 -25.46375 -24.08972 -22.66145 -22.23944 -21.45496 -21.13945 -20.23070 -19.83893 -18.69475 -17.93946 -17.64714 -16.91901 -16.82621 -16.74649 -16.30819 -15.98694 -15.82222 -15.69970 -15.40659 -14.93537 -14.86299 -14.74222 -14.36790 -14.27370 -14.19229 -13.88733 -13.80782 -13.64254 -13.20630 -13.16732 -12.93533 -12.84433 -12.64196 -12.52881 -12.44462 -12.42057 -12.21119 -12.07466 -11.99634 -11.92788 -11.84931 -11.75902 -11.49269 -11.09829 -10.39035 -10.24873 -9.80956 -9.35122 -9.29041 -8.42996 -6.03122 1.27447 1.32755 1.38057 1.40877 1.77463 1.93068 2.20213 2.58345 2.95417 3.12212 3.19150 3.22594 3.49356 3.63786 3.67269 3.75297 4.01187 4.07095 4.11826 4.23592 4.25379 4.29074 4.31578 4.34918 4.39389 4.50324 4.54036 4.55697 4.59497 4.71990 4.75861 4.77320 4.84466 4.85840 4.94322 4.97469 5.00473 5.04765 5.15369 5.16571 5.25237 5.28430 5.51240 5.75089 5.83477 5.84565 5.96381 6.14898 6.40568 6.57755 6.86734 6.99221 7.37938 7.94374 8.74467 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.002417 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.053359 B =11582.022506 C =12650.924094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.526 5.526 3 C 0.051 3.949 4 C 0.454 3.546 5 O -0.600 6.600 6 N -0.594 5.594 7 C -0.324 4.324 8 H 0.059 0.941 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.960 3.040 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.234 1.234 15 C 0.074 3.926 16 H 0.070 0.930 17 C -0.115 4.115 18 C 0.099 3.901 19 N -0.613 5.613 20 C 0.513 3.487 21 O -0.580 6.580 22 C 0.057 3.943 23 H 0.127 0.873 24 C -0.130 4.130 25 C -0.117 4.117 26 C 0.032 3.968 27 N -0.511 5.511 28 C 0.015 3.985 29 C 0.111 3.889 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.387 0.613 36 H 0.279 0.721 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.037 0.963 46 H 0.100 0.900 47 H 0.039 0.961 48 H 0.050 0.950 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 -23.338 23.677 33.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.251 5.251 3 C -0.080 4.080 4 C 0.241 3.759 5 O -0.484 6.484 6 N -0.236 5.236 7 C -0.454 4.454 8 H 0.077 0.923 9 C -0.213 4.213 10 N -0.574 5.574 11 Si 0.781 3.219 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.157 1.157 15 C -0.035 4.035 16 H 0.088 0.912 17 C -0.153 4.153 18 C -0.023 4.023 19 N -0.346 5.346 20 C 0.302 3.698 21 O -0.460 6.460 22 C -0.054 4.054 23 H 0.144 0.856 24 C -0.169 4.169 25 C -0.155 4.155 26 C -0.096 4.096 27 N -0.236 5.236 28 C -0.133 4.133 29 C -0.013 4.013 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.223 0.777 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.056 0.944 46 H 0.118 0.882 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.095 0.905 50 H 0.083 0.917 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.706 -23.602 22.925 33.580 hybrid contribution 0.698 2.323 -0.178 2.432 sum 7.404 -21.279 22.748 32.017 Atomic orbital electron populations 1.22411 0.85680 1.03415 1.00320 1.61535 1.09473 1.11770 1.42346 1.21835 1.02156 0.90163 0.93889 1.20751 0.82999 0.81754 0.90349 1.90521 1.43994 1.65015 1.48895 1.42072 1.51836 1.12685 1.17000 1.18993 1.34694 0.96987 0.94692 0.92326 1.26056 0.98655 0.97012 0.99547 1.69796 1.47191 1.14396 1.25974 0.85424 0.78990 0.78366 0.79144 1.18494 1.19809 1.15700 1.22765 0.92898 0.95801 0.91987 0.91224 1.22707 0.99120 0.91445 1.01996 1.22358 0.84026 0.93578 1.02295 1.48618 1.14041 1.19805 1.52151 1.21329 0.80380 0.89570 0.78497 1.90686 1.42905 1.50309 1.62056 1.22812 1.02371 0.91968 0.88203 0.85581 1.22828 0.96430 0.98935 0.98689 1.22762 1.01463 0.97923 0.93355 1.23280 0.88447 0.96306 1.01540 1.64178 1.25436 1.12329 1.21615 1.22776 1.00947 0.87910 1.01707 1.22095 0.95068 0.87915 0.96222 0.94356 0.92913 0.89609 0.90421 0.87548 0.77740 0.91162 0.90021 0.87368 0.88881 0.88665 0.87774 0.92884 0.89284 0.88424 0.94419 0.88190 0.94220 0.93158 0.90508 0.91650 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 8.97 127.69 1.14 1.95 16 2 N -0.53 -15.05 4.40 -893.87 -3.93 -18.99 16 3 C 0.05 1.61 5.32 85.56 0.45 2.07 16 4 C 0.45 20.65 7.42 87.66 0.65 21.30 16 5 O -0.60 -32.78 13.96 -3.09 -0.04 -32.82 16 6 N -0.59 -28.56 5.09 -306.98 -1.56 -30.12 16 7 C -0.32 -19.16 10.16 84.04 0.85 -18.31 16 8 H 0.06 4.09 7.39 -2.92 -0.02 4.07 16 9 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 10 N -0.93 -56.73 13.96 21.66 0.30 -56.42 16 11 Si 0.96 39.83 27.74 68.60 1.90 41.73 16 12 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 13 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 14 H -0.23 -8.25 6.52 99.48 0.65 -7.60 16 15 C 0.07 1.52 2.69 46.23 0.12 1.64 16 16 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 17 C -0.11 -1.63 5.53 31.78 0.18 -1.45 16 18 C 0.10 1.17 5.86 86.73 0.51 1.68 16 19 N -0.61 -12.09 3.33 -812.24 -2.70 -14.79 16 20 C 0.51 11.56 4.95 87.66 0.43 11.99 16 21 O -0.58 -17.85 14.02 -3.05 -0.04 -17.89 16 22 C 0.06 0.91 3.64 44.51 0.16 1.07 16 23 H 0.13 1.40 6.65 -2.39 -0.02 1.39 16 24 C -0.13 -1.75 6.46 31.88 0.21 -1.54 16 25 C -0.12 -1.16 7.10 32.08 0.23 -0.93 16 26 C 0.03 0.43 6.72 86.78 0.58 1.02 16 27 N -0.51 -8.71 5.44 -890.92 -4.85 -13.56 16 28 C 0.01 0.30 8.19 127.69 1.05 1.35 16 29 C 0.11 2.60 5.24 86.78 0.46 3.06 16 30 H 0.04 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.05 1.96 5.79 -2.39 -0.01 1.94 16 32 H 0.09 1.96 7.47 -2.39 -0.02 1.95 16 33 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 34 H 0.11 3.05 6.64 -2.39 -0.02 3.04 16 35 H 0.39 15.71 5.76 -92.71 -0.53 15.18 16 36 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.10 0.75 7.93 -2.39 -0.02 0.73 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.05 0.99 7.71 -2.39 -0.02 0.97 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.04 0.63 7.62 -2.39 -0.02 0.61 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.04 1.02 5.83 -2.39 -0.01 1.00 16 48 H 0.05 1.11 6.91 -2.39 -0.02 1.09 16 49 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.07 1.67 7.69 -2.39 -0.02 1.65 16 51 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -80.95 391.77 -3.10 -84.05 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.34 Total: 34.24 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 7.49 Total: 24.58 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -12.75 Total: -133.88 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.09 Total: -50.72 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 1.90 Total: 41.73 kcal Total: -80.95 -3.10 -84.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189389917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.349 kcal (2) G-P(sol) polarization free energy of solvation -80.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds