Wall clock time and date at job start Tue Mar 31 2020 22:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 O 1.21287 * 120.00244 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99391 * 180.02562 * 4 3 2 7 7 C 1.37104 * 119.99824 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99735 * 359.97438 * 7 6 4 9 9 C 1.38943 * 119.99939 * 179.97438 * 7 6 4 10 10 N 1.31408 * 120.00177 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99865 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47013 * 60.00055 * 11 9 7 13 13 H 1.48503 * 109.47038 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47079 * 299.99919 * 11 9 7 15 15 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 16 16 H 1.08997 * 110.88620 * 61.52917 * 15 2 1 17 17 C 1.55158 * 111.00252 * 185.40952 * 15 2 1 18 18 C 1.54323 * 102.94017 * 153.57574 * 17 15 2 19 19 N 1.47020 * 107.27328 * 337.80911 * 18 17 15 20 20 C 1.34780 * 125.64869 * 178.89562 * 19 18 17 21 21 O 1.21284 * 119.99788 * 180.02562 * 20 19 18 22 22 C 1.50696 * 119.99959 * 0.02562 * 20 19 18 23 23 H 1.08999 * 110.64842 * 303.15657 * 22 20 19 24 24 C 1.54594 * 110.72269 * 179.97438 * 22 20 19 25 25 C 1.53993 * 105.13924 * 219.68509 * 24 22 20 26 26 N 1.47903 * 107.05990 * 358.77739 * 25 24 22 27 27 C 1.46896 * 111.00012 * 145.84573 * 26 25 24 28 28 C 1.48532 * 105.81837 * 25.32647 * 26 25 24 29 29 C 1.47425 * 108.70266 * 358.93854 * 19 18 17 30 30 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 31 31 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 32 32 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 33 33 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 34 34 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 35 35 H 0.97003 * 120.00555 * 0.02562 * 6 4 3 36 36 H 0.97001 * 119.99832 * 179.97438 * 10 9 7 37 37 H 1.08995 * 110.71989 * 271.93792 * 17 15 2 38 38 H 1.09001 * 110.72137 * 35.21177 * 17 15 2 39 39 H 1.09007 * 109.88052 * 97.22419 * 18 17 15 40 40 H 1.09003 * 109.88404 * 218.38499 * 18 17 15 41 41 H 1.08996 * 110.31470 * 338.60255 * 24 22 20 42 42 H 1.09004 * 110.30587 * 100.67362 * 24 22 20 43 43 H 1.08999 * 109.91645 * 118.12988 * 25 24 22 44 44 H 1.09008 * 109.91662 * 239.22738 * 25 24 22 45 45 H 1.08997 * 109.47660 * 60.12122 * 27 26 25 46 46 H 1.09000 * 109.47149 * 180.12819 * 27 26 25 47 47 H 1.09004 * 109.47002 * 300.12819 * 27 26 25 48 48 H 1.08997 * 110.66791 * 202.35576 * 28 26 25 49 49 H 1.09007 * 110.66218 * 79.22672 * 28 26 25 50 50 H 1.08998 * 110.36671 * 265.29432 * 29 19 18 51 51 H 1.08997 * 110.36676 * 142.97358 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0055 1.4452 2.1412 6 7 2.0182 3.3200 1.5234 7 6 1.6925 3.9346 2.7049 8 1 1.1302 3.3987 3.4552 9 6 2.0859 5.2468 2.9369 10 7 2.7697 5.8990 2.0238 11 14 1.6415 6.0844 4.5465 12 1 2.2332 5.3270 5.6784 13 1 2.1733 7.4709 4.5462 14 1 0.1642 6.1213 4.6939 15 6 1.9954 -0.7660 -1.1377 16 1 1.6814 -0.3232 -2.0829 17 6 3.5410 -0.8806 -1.0634 18 6 3.8282 -2.1856 -1.8355 19 7 2.5943 -2.9848 -1.8164 20 6 2.4280 -4.1871 -2.4022 21 8 1.3612 -4.7584 -2.3219 22 6 3.5676 -4.8216 -3.1570 23 1 3.9212 -4.1593 -3.9472 24 6 3.1442 -6.1902 -3.7381 25 6 4.3669 -7.1057 -3.5427 26 7 5.4267 -6.2864 -2.9158 27 6 6.2374 -7.0913 -1.9923 28 6 4.7219 -5.1963 -2.1938 29 6 1.5688 -2.2527 -1.0511 30 1 -0.3634 -1.0252 0.0708 31 1 -0.3633 0.4513 -0.9233 32 1 -0.3633 0.5740 0.8525 33 1 3.0798 1.3443 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5229 3.8015 0.8493 36 1 3.0440 6.8153 2.1857 37 1 4.0147 -0.0302 -1.5537 38 1 3.8722 -0.9641 -0.0283 39 1 4.1042 -1.9545 -2.8644 40 1 4.6335 -2.7352 -1.3480 41 1 2.2861 -6.5835 -3.1931 42 1 2.9070 -6.0942 -4.7976 43 1 4.1065 -7.9387 -2.8897 44 1 4.7066 -7.4825 -4.5075 45 1 6.7075 -7.9085 -2.5392 46 1 7.0075 -6.4639 -1.5436 47 1 5.5985 -7.4988 -1.2087 48 1 5.3855 -4.3455 -2.0392 49 1 4.3282 -5.5563 -1.2432 50 1 1.5607 -2.5851 -0.0131 51 1 0.5867 -2.3924 -1.5027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194002797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:25 Heat of formation + Delta-G solvation = -45.337633 kcal Electronic energy + Delta-G solvation = -29751.288079 eV Core-core repulsion = 25685.964062 eV Total energy + Delta-G solvation = -4065.324016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75623 -39.24757 -38.37994 -37.55348 -35.52061 -33.85461 -32.71566 -31.27414 -31.10197 -29.88239 -28.80677 -27.49510 -26.34666 -25.32341 -24.12895 -23.01447 -21.89347 -21.41859 -20.28369 -19.35748 -19.02582 -17.86536 -17.77151 -16.80690 -16.41314 -15.92511 -15.89235 -15.37286 -14.77379 -14.64803 -14.56610 -14.43007 -14.21945 -13.91849 -13.82643 -13.58572 -13.55136 -13.32626 -12.93477 -12.86989 -12.68271 -12.21820 -12.04235 -11.91807 -11.85809 -11.81264 -11.58437 -11.52616 -11.43982 -11.16846 -11.08310 -10.97500 -10.94237 -10.81315 -10.45368 -10.23017 -10.06912 -9.48580 -8.93621 -8.84963 -8.49786 -8.01340 -7.91680 -6.43424 -3.84256 2.35626 2.64489 3.18824 3.24761 3.29024 3.56336 3.88042 3.91488 4.06840 4.14964 4.21292 4.26413 4.47715 4.55376 4.75446 4.83628 4.85366 4.91531 5.01041 5.02951 5.05014 5.11877 5.15889 5.21538 5.26071 5.33033 5.41949 5.47505 5.49924 5.58723 5.62771 5.67794 5.68962 5.76334 5.76730 5.84813 5.87115 5.93034 6.03013 6.08983 6.25700 6.36142 6.50985 6.52362 7.15928 7.28685 7.31845 7.53521 7.91085 8.04346 8.59870 9.16401 9.52374 10.04203 10.74164 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.001921 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.558720 B =14574.215514 C =15101.421858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.564 5.564 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.128 4.128 18 C 0.100 3.900 19 N -0.615 5.615 20 C 0.537 3.463 21 O -0.539 6.539 22 C -0.109 4.109 23 H 0.109 0.891 24 C -0.119 4.119 25 C 0.034 3.966 26 N -0.521 5.521 27 C 0.014 3.986 28 C 0.045 3.955 29 C 0.117 3.883 30 H 0.061 0.939 31 H 0.016 0.984 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.030 0.970 48 H 0.092 0.908 49 H 0.051 0.949 50 H 0.082 0.918 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 -19.958 -13.913 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.231 5.231 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.200 5.200 7 C -0.429 4.429 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.166 4.166 18 C -0.023 4.023 19 N -0.349 5.349 20 C 0.325 3.675 21 O -0.416 6.416 22 C -0.131 4.131 23 H 0.127 0.873 24 C -0.157 4.157 25 C -0.094 4.094 26 N -0.244 5.244 27 C -0.134 4.134 28 C -0.083 4.083 29 C -0.006 4.006 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.048 0.952 48 H 0.110 0.890 49 H 0.069 0.931 50 H 0.100 0.900 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.544 -20.579 -13.282 25.352 hybrid contribution -0.532 0.993 0.198 1.144 sum 6.012 -19.585 -13.084 24.309 Atomic orbital electron populations 1.22581 0.86327 1.02223 1.01670 1.61611 1.08859 1.12966 1.39675 1.21877 1.00831 0.88578 0.97285 1.19700 0.85544 0.82956 0.88906 1.90490 1.43893 1.64631 1.47089 1.41857 1.49448 1.10721 1.18010 1.19643 1.33024 0.95463 0.94729 0.87961 1.25255 0.96803 0.96648 0.99221 1.69600 1.38016 1.12278 1.34430 0.85922 0.78908 0.77919 0.81495 1.19884 1.20997 1.19937 1.22784 0.94929 0.93335 0.93054 0.92712 1.22772 0.95381 0.96205 1.02256 1.22175 0.87135 0.92134 1.00858 1.48422 1.14492 1.18766 1.53240 1.20052 0.89278 0.79591 0.78624 1.90701 1.28067 1.61884 1.60954 1.22170 0.93921 0.98407 0.98580 0.87284 1.22375 0.98345 0.92760 1.02225 1.22926 0.90714 0.95503 1.00217 1.64761 1.20286 1.10499 1.28894 1.22540 0.97887 0.97916 0.95093 1.23236 0.94104 0.95789 0.95142 1.22204 0.91595 0.89901 0.96900 0.91990 0.96588 0.88288 0.89207 0.93412 0.77509 0.91826 0.89706 0.88851 0.91109 0.90861 0.89323 0.90384 0.93431 0.89954 0.91065 0.90975 0.95181 0.88965 0.93061 0.89950 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.01 60.07 0.54 0.85 16 2 N -0.51 -7.94 4.40 -233.74 -1.03 -8.97 16 3 C 0.05 0.77 5.32 -4.97 -0.03 0.74 16 4 C 0.44 10.09 7.47 -10.98 -0.08 10.01 16 5 O -0.58 -15.09 13.91 5.55 0.08 -15.01 16 6 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 7 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 11 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 15 C 0.07 0.83 2.71 -65.56 -0.18 0.65 16 16 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 17 C -0.13 -1.25 5.31 -24.90 -0.13 -1.38 16 18 C 0.10 0.82 6.11 -3.07 -0.02 0.80 16 19 N -0.61 -6.65 3.33 -170.52 -0.57 -7.22 16 20 C 0.54 6.27 7.19 -10.99 -0.08 6.19 16 21 O -0.54 -8.28 15.69 5.55 0.09 -8.19 16 22 C -0.11 -0.94 2.84 -89.91 -0.26 -1.19 16 23 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 24 C -0.12 -0.99 6.33 -25.38 -0.16 -1.15 16 25 C 0.03 0.25 6.70 -2.75 -0.02 0.23 16 26 N -0.52 -4.06 5.55 -238.71 -1.33 -5.38 16 27 C 0.01 0.09 9.40 60.06 0.56 0.66 16 28 C 0.05 0.36 5.28 -1.90 -0.01 0.35 16 29 C 0.12 1.44 5.38 -2.53 -0.01 1.42 16 30 H 0.06 0.88 7.15 -51.93 -0.37 0.51 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 1.91 5.83 -51.93 -0.30 1.61 16 33 H 0.09 1.33 6.73 -51.93 -0.35 0.98 16 34 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 40 H 0.07 0.51 6.26 -51.93 -0.32 0.18 16 41 H 0.09 0.91 6.85 -51.93 -0.36 0.55 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.34 7.73 -51.93 -0.40 -0.06 16 44 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.03 0.20 8.00 -51.93 -0.42 -0.22 16 48 H 0.09 0.62 6.50 -51.93 -0.34 0.28 16 49 H 0.05 0.46 7.87 -51.93 -0.41 0.05 16 50 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.08 1.00 7.91 -51.93 -0.41 0.59 16 LS Contribution 397.94 15.07 6.00 6.00 Total: -1.00 -32.30 397.94 -9.80 -42.09 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -8.57 Total: 7.88 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -0.11 Total: 10.35 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -2.25 Total: -58.89 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.16 Total: -23.20 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.30 -9.80 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194002797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.248 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds