Wall clock time and date at job start Tue Mar 31 2020 22:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 O 1.21287 * 120.00244 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99391 * 180.02562 * 4 3 2 7 7 C 1.37104 * 119.99824 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99735 * 359.97438 * 7 6 4 9 9 C 1.38943 * 119.99939 * 179.97438 * 7 6 4 10 10 N 1.31408 * 120.00177 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99865 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47013 * 60.00055 * 11 9 7 13 13 H 1.48503 * 109.47038 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47079 * 299.99919 * 11 9 7 15 15 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 16 16 H 1.08997 * 110.88620 * 61.52917 * 15 2 1 17 17 C 1.55158 * 111.00252 * 185.40952 * 15 2 1 18 18 C 1.54323 * 102.94017 * 153.57574 * 17 15 2 19 19 N 1.47020 * 107.27328 * 337.80911 * 18 17 15 20 20 C 1.34780 * 125.64869 * 178.89562 * 19 18 17 21 21 O 1.21284 * 119.99788 * 180.02562 * 20 19 18 22 22 C 1.50696 * 119.99959 * 0.02562 * 20 19 18 23 23 H 1.08999 * 110.64842 * 303.15657 * 22 20 19 24 24 C 1.54594 * 110.72269 * 179.97438 * 22 20 19 25 25 C 1.53993 * 105.13924 * 219.68509 * 24 22 20 26 26 N 1.47903 * 107.05990 * 358.77739 * 25 24 22 27 27 C 1.46896 * 111.00012 * 145.84573 * 26 25 24 28 28 C 1.48532 * 105.81837 * 25.32647 * 26 25 24 29 29 C 1.47425 * 108.70266 * 358.93854 * 19 18 17 30 30 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 31 31 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 32 32 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 33 33 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 34 34 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 35 35 H 0.97003 * 120.00555 * 0.02562 * 6 4 3 36 36 H 0.97001 * 119.99832 * 179.97438 * 10 9 7 37 37 H 1.08995 * 110.71989 * 271.93792 * 17 15 2 38 38 H 1.09001 * 110.72137 * 35.21177 * 17 15 2 39 39 H 1.09007 * 109.88052 * 97.22419 * 18 17 15 40 40 H 1.09003 * 109.88404 * 218.38499 * 18 17 15 41 41 H 1.08996 * 110.31470 * 338.60255 * 24 22 20 42 42 H 1.09004 * 110.30587 * 100.67362 * 24 22 20 43 43 H 1.08999 * 109.91645 * 118.12988 * 25 24 22 44 44 H 1.09008 * 109.91662 * 239.22738 * 25 24 22 45 45 H 1.08997 * 109.47660 * 60.12122 * 27 26 25 46 46 H 1.09000 * 109.47149 * 180.12819 * 27 26 25 47 47 H 1.09004 * 109.47002 * 300.12819 * 27 26 25 48 48 H 1.08997 * 110.66791 * 202.35576 * 28 26 25 49 49 H 1.09007 * 110.66218 * 79.22672 * 28 26 25 50 50 H 1.08998 * 110.36671 * 265.29432 * 29 19 18 51 51 H 1.08997 * 110.36676 * 142.97358 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0055 1.4452 2.1412 6 7 2.0182 3.3200 1.5234 7 6 1.6925 3.9346 2.7049 8 1 1.1302 3.3987 3.4552 9 6 2.0859 5.2468 2.9369 10 7 2.7697 5.8990 2.0238 11 14 1.6415 6.0844 4.5465 12 1 2.2332 5.3270 5.6784 13 1 2.1733 7.4709 4.5462 14 1 0.1642 6.1213 4.6939 15 6 1.9954 -0.7660 -1.1377 16 1 1.6814 -0.3232 -2.0829 17 6 3.5410 -0.8806 -1.0634 18 6 3.8282 -2.1856 -1.8355 19 7 2.5943 -2.9848 -1.8164 20 6 2.4280 -4.1871 -2.4022 21 8 1.3612 -4.7584 -2.3219 22 6 3.5676 -4.8216 -3.1570 23 1 3.9212 -4.1593 -3.9472 24 6 3.1442 -6.1902 -3.7381 25 6 4.3669 -7.1057 -3.5427 26 7 5.4267 -6.2864 -2.9158 27 6 6.2374 -7.0913 -1.9923 28 6 4.7219 -5.1963 -2.1938 29 6 1.5688 -2.2527 -1.0511 30 1 -0.3634 -1.0252 0.0708 31 1 -0.3633 0.4513 -0.9233 32 1 -0.3633 0.5740 0.8525 33 1 3.0798 1.3443 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5229 3.8015 0.8493 36 1 3.0440 6.8153 2.1857 37 1 4.0147 -0.0302 -1.5537 38 1 3.8722 -0.9641 -0.0283 39 1 4.1042 -1.9545 -2.8644 40 1 4.6335 -2.7352 -1.3480 41 1 2.2861 -6.5835 -3.1931 42 1 2.9070 -6.0942 -4.7976 43 1 4.1065 -7.9387 -2.8897 44 1 4.7066 -7.4825 -4.5075 45 1 6.7075 -7.9085 -2.5392 46 1 7.0075 -6.4639 -1.5436 47 1 5.5985 -7.4988 -1.2087 48 1 5.3855 -4.3455 -2.0392 49 1 4.3282 -5.5563 -1.2432 50 1 1.5607 -2.5851 -0.0131 51 1 0.5867 -2.3924 -1.5027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194002797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:24 Heat of formation + Delta-G solvation = -70.418498 kcal Electronic energy + Delta-G solvation = -29752.375667 eV Core-core repulsion = 25685.964062 eV Total energy + Delta-G solvation = -4066.411604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60878 -40.47950 -39.55115 -38.64331 -36.76878 -35.76755 -33.39502 -33.25120 -31.98350 -30.71933 -29.80892 -28.68166 -27.14124 -26.73654 -25.45427 -24.03033 -22.60928 -22.04768 -21.39193 -20.86748 -20.04189 -19.77893 -18.58137 -17.92907 -17.54924 -16.97904 -16.71389 -16.58322 -16.34413 -16.01264 -15.70203 -15.33617 -15.23784 -15.12427 -14.97675 -14.73014 -14.54277 -14.14162 -13.99563 -13.83328 -13.68000 -13.57758 -13.42274 -13.06431 -12.94576 -12.62130 -12.54601 -12.51162 -12.43493 -12.41349 -12.25259 -12.17474 -12.12295 -11.85781 -11.83376 -11.65541 -11.43214 -11.01329 -10.26904 -9.97345 -9.74522 -9.50065 -9.26241 -8.44200 -5.92207 1.40743 1.42817 1.47517 1.53070 1.78009 2.08848 2.30239 2.76059 2.97565 3.22724 3.31900 3.42405 3.47616 3.57869 3.65936 3.83114 4.05260 4.14008 4.17094 4.22300 4.29128 4.33635 4.36183 4.39189 4.49578 4.50842 4.54150 4.56045 4.58953 4.63347 4.70994 4.77110 4.81413 4.89574 4.92731 4.99808 5.01440 5.03947 5.11696 5.15559 5.22308 5.25395 5.43480 5.77934 5.85031 5.95772 6.04993 6.18358 6.43312 6.63941 7.02382 7.16146 7.60099 8.16435 8.72789 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.001921 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.558720 B =14574.215514 C =15101.421858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.525 5.525 3 C 0.060 3.940 4 C 0.441 3.559 5 O -0.616 6.616 6 N -0.574 5.574 7 C -0.331 4.331 8 H 0.077 0.923 9 C -0.012 4.012 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.273 1.273 13 H -0.271 1.271 14 H -0.274 1.274 15 C 0.073 3.927 16 H 0.069 0.931 17 C -0.125 4.125 18 C 0.101 3.899 19 N -0.613 5.613 20 C 0.533 3.467 21 O -0.585 6.585 22 C -0.101 4.101 23 H 0.131 0.869 24 C -0.119 4.119 25 C 0.036 3.964 26 N -0.525 5.525 27 C 0.013 3.987 28 C 0.049 3.951 29 C 0.119 3.881 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.024 0.976 48 H 0.110 0.890 49 H 0.035 0.965 50 H 0.062 0.938 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.106 -19.815 -15.653 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.249 5.249 3 C -0.071 4.071 4 C 0.229 3.771 5 O -0.502 6.502 6 N -0.211 5.211 7 C -0.461 4.461 8 H 0.095 0.905 9 C -0.212 4.212 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.199 1.199 15 C -0.036 4.036 16 H 0.087 0.913 17 C -0.162 4.162 18 C -0.021 4.021 19 N -0.346 5.346 20 C 0.322 3.678 21 O -0.465 6.465 22 C -0.123 4.123 23 H 0.149 0.851 24 C -0.158 4.158 25 C -0.091 4.091 26 N -0.249 5.249 27 C -0.136 4.136 28 C -0.079 4.079 29 C -0.004 4.004 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.043 0.957 48 H 0.128 0.872 49 H 0.053 0.947 50 H 0.081 0.919 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.737 -20.427 -15.047 26.833 hybrid contribution -1.234 0.864 0.738 1.678 sum 7.503 -19.562 -14.309 25.372 Atomic orbital electron populations 1.22419 0.86961 1.02231 1.00613 1.61520 1.08586 1.12620 1.42202 1.21735 1.02577 0.88850 0.93932 1.20785 0.83694 0.82216 0.90449 1.90474 1.45168 1.65398 1.49137 1.41912 1.50137 1.11543 1.17545 1.19586 1.34377 0.96377 0.95738 0.90455 1.25979 0.96363 0.96654 1.02224 1.69655 1.38111 1.12633 1.35599 0.85035 0.78516 0.77341 0.77722 1.19801 1.19532 1.19930 1.22795 0.96618 0.92137 0.92051 0.91313 1.22802 0.93293 0.98020 1.02133 1.22382 0.86151 0.91035 1.02557 1.48497 1.15046 1.18689 1.52405 1.20637 0.89459 0.79402 0.78281 1.90682 1.30083 1.63060 1.62700 1.22189 0.92799 0.98509 0.98774 0.85088 1.22360 0.97969 0.92937 1.02514 1.22939 0.90225 0.95136 1.00845 1.64818 1.20198 1.10730 1.29110 1.22595 0.97787 0.98253 0.94928 1.23240 0.94032 0.96483 0.94187 1.22019 0.91842 0.90588 0.95969 0.91068 0.95023 0.92218 0.86417 0.91383 0.76950 0.91354 0.87348 0.90222 0.88233 0.89161 0.91797 0.89261 0.93727 0.88608 0.90071 0.90207 0.95746 0.87223 0.94682 0.91938 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.01 127.69 1.15 1.97 16 2 N -0.52 -15.97 4.40 -893.41 -3.93 -19.90 16 3 C 0.06 1.92 5.32 85.56 0.46 2.38 16 4 C 0.44 20.27 7.47 87.66 0.66 20.92 16 5 O -0.62 -33.29 13.91 -3.05 -0.04 -33.33 16 6 N -0.57 -28.58 5.29 -306.98 -1.62 -30.20 16 7 C -0.33 -18.49 9.68 84.04 0.81 -17.67 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 10 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 11 Si 0.99 42.53 29.55 68.60 2.03 44.55 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 13 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 14 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 15 C 0.07 1.61 2.71 46.31 0.13 1.73 16 16 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 17 C -0.12 -2.03 5.31 31.78 0.17 -1.86 16 18 C 0.10 1.29 6.11 86.73 0.53 1.82 16 19 N -0.61 -12.28 3.33 -811.79 -2.70 -14.98 16 20 C 0.53 11.98 7.19 87.66 0.63 12.61 16 21 O -0.58 -18.35 15.69 -3.04 -0.05 -18.40 16 22 C -0.10 -1.54 2.84 -10.34 -0.03 -1.57 16 23 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 24 C -0.12 -1.87 6.33 31.47 0.20 -1.67 16 25 C 0.04 0.47 6.70 86.45 0.58 1.05 16 26 N -0.52 -6.98 5.55 -909.16 -5.05 -12.03 16 27 C 0.01 0.14 9.40 127.69 1.20 1.34 16 28 C 0.05 0.66 5.28 86.65 0.46 1.12 16 29 C 0.12 2.88 5.38 86.85 0.47 3.35 16 30 H 0.07 2.08 7.15 -2.39 -0.02 2.06 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 2.40 5.83 -2.38 -0.01 2.38 16 33 H 0.12 3.14 6.73 -2.39 -0.02 3.12 16 34 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 35 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 36 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 37 H 0.11 1.31 7.88 -2.39 -0.02 1.29 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.09 0.90 6.26 -2.39 -0.01 0.89 16 41 H 0.06 1.34 6.85 -2.39 -0.02 1.32 16 42 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.04 0.60 7.73 -2.39 -0.02 0.58 16 44 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.02 0.29 8.00 -2.39 -0.02 0.27 16 48 H 0.11 1.10 6.50 -2.39 -0.02 1.08 16 49 H 0.03 0.59 7.87 -2.38 -0.02 0.57 16 50 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.06 1.70 7.91 -2.39 -0.02 1.68 16 Total: -1.00 -72.48 397.94 -3.01 -75.49 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.20 Total: 31.80 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 7.87 Total: 25.33 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -13.02 Total: -125.46 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.09 Total: -51.73 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -72.48 -3.01 -75.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194002797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.074 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds