Wall clock time and date at job start Tue Mar 31 2020 22:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99759 * 2 1 4 4 C 1.50702 * 109.47020 * 293.95191 * 3 2 1 5 5 O 1.21294 * 120.00120 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99749 * 180.02562 * 4 3 2 7 7 C 1.37092 * 119.99758 * 179.97438 * 6 4 3 8 8 H 1.08003 * 120.00447 * 0.02562 * 7 6 4 9 9 C 1.38962 * 119.99869 * 179.97438 * 7 6 4 10 10 N 1.31407 * 119.99843 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99814 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47230 * 90.00123 * 11 9 7 13 13 H 1.48504 * 109.46931 * 209.99928 * 11 9 7 14 14 H 1.48503 * 109.47222 * 329.99819 * 11 9 7 15 15 C 1.46898 * 110.99684 * 123.94834 * 2 1 3 16 16 H 1.08994 * 110.91998 * 292.14667 * 15 2 1 17 17 C 1.55164 * 110.99967 * 168.24386 * 15 2 1 18 18 C 1.54330 * 102.94081 * 206.42531 * 17 15 2 19 19 N 1.47026 * 107.26840 * 22.19556 * 18 17 15 20 20 C 1.34775 * 125.64611 * 181.02123 * 19 18 17 21 21 O 1.21283 * 120.00103 * 180.02562 * 20 19 18 22 22 C 1.50704 * 119.99927 * 0.02745 * 20 19 18 23 23 H 1.08998 * 110.62920 * 61.64696 * 22 20 19 24 24 C 1.55137 * 110.70550 * 184.94843 * 22 20 19 25 25 C 1.54910 * 101.65543 * 154.03536 * 24 22 20 26 26 N 1.47844 * 104.79544 * 322.92658 * 25 24 22 27 27 C 1.46895 * 111.00123 * 146.36209 * 26 25 24 28 28 C 1.47445 * 108.56685 * 24.09626 * 26 25 24 29 29 C 1.47422 * 108.70500 * 1.05856 * 19 18 17 30 30 H 1.08992 * 109.47361 * 296.05082 * 1 2 3 31 31 H 1.09002 * 109.46930 * 56.05273 * 1 2 3 32 32 H 1.09001 * 109.46600 * 176.04151 * 1 2 3 33 33 H 1.09002 * 109.46971 * 53.95107 * 3 2 1 34 34 H 1.09000 * 109.46828 * 173.95215 * 3 2 1 35 35 H 0.97006 * 120.00214 * 359.97438 * 6 4 3 36 36 H 0.96998 * 120.00119 * 179.97438 * 10 9 7 37 37 H 1.08999 * 110.71932 * 88.06864 * 17 15 2 38 38 H 1.08995 * 110.72046 * 324.79119 * 17 15 2 39 39 H 1.08998 * 109.88224 * 262.77875 * 18 17 15 40 40 H 1.08998 * 109.88221 * 141.61268 * 18 17 15 41 41 H 1.09003 * 110.99308 * 272.12679 * 24 22 20 42 42 H 1.09005 * 110.99416 * 35.94078 * 24 22 20 43 43 H 1.08998 * 110.37295 * 204.10054 * 25 24 22 44 44 H 1.09002 * 110.46775 * 81.80461 * 25 24 22 45 45 H 1.09000 * 109.47138 * 299.16210 * 27 26 25 46 46 H 1.08997 * 109.47004 * 59.16008 * 27 26 25 47 47 H 1.09003 * 109.47428 * 179.15898 * 27 26 25 48 48 H 1.09002 * 109.89173 * 239.60749 * 28 26 25 49 49 H 1.09004 * 109.89094 * 118.41100 * 28 26 25 50 50 H 1.08996 * 110.36785 * 94.70778 * 29 19 18 51 51 H 1.09004 * 110.36699 * 216.92190 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 8 1.0054 1.4453 -2.1412 6 7 2.0188 3.3199 -1.5237 7 6 1.6931 3.9343 -2.7052 8 1 1.1302 3.3987 -3.4553 9 6 2.0864 5.2468 -2.9372 10 7 2.7701 5.8990 -2.0240 11 14 1.6421 6.0842 -4.5467 12 1 0.3298 6.7647 -4.4048 13 1 2.6844 7.0854 -4.8880 14 1 1.5588 5.0684 -5.6268 15 6 1.9954 -0.7659 1.1377 16 1 1.7765 -0.2633 2.0797 17 6 3.5186 -1.0168 0.9819 18 6 3.7400 -2.3122 1.7911 19 7 2.4440 -3.0015 1.8746 20 6 2.2121 -4.1631 2.5176 21 8 1.0982 -4.6427 2.5205 22 6 3.3371 -4.8659 3.2329 23 1 3.7353 -4.2395 4.0311 24 6 2.8632 -6.2345 3.7890 25 6 4.1923 -7.0287 3.8398 26 7 4.9374 -6.5950 2.6388 27 6 6.3836 -6.5739 2.8957 28 6 4.4519 -5.2607 2.2415 29 6 1.4404 -2.2121 1.1377 30 1 -0.3633 0.4513 0.9232 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3632 -1.0252 -0.0709 33 1 1.5610 1.9274 0.8309 34 1 3.0797 1.3445 0.1083 35 1 2.5241 3.8011 -0.8499 36 1 3.0450 6.8150 -2.1861 37 1 4.0908 -0.1931 1.4088 38 1 3.7796 -1.1671 -0.0656 39 1 4.0951 -2.0679 2.7922 40 1 4.4656 -2.9473 1.2829 41 1 2.4359 -6.1243 4.7857 42 1 2.1520 -6.7064 3.1110 43 1 3.9959 -8.1001 3.7981 44 1 4.7502 -6.7807 4.7427 45 1 6.5997 -5.8698 3.6992 46 1 6.7155 -7.5705 3.1868 47 1 6.9088 -6.2658 1.9916 48 1 4.0510 -5.2984 1.2286 49 1 5.2670 -4.5388 2.2934 50 1 1.3426 -2.5810 0.1167 51 1 0.4780 -2.2509 1.6481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194002798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:29 Heat of formation + Delta-G solvation = -45.234110 kcal Electronic energy + Delta-G solvation = -29777.128846 eV Core-core repulsion = 25711.809319 eV Total energy + Delta-G solvation = -4065.319527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78178 -39.25725 -38.39754 -37.56482 -35.52169 -33.85518 -32.65423 -31.27635 -31.11186 -29.94417 -28.81247 -27.45663 -26.36044 -25.35983 -24.14325 -23.01353 -21.87796 -21.43503 -20.27182 -19.46276 -19.09511 -17.87720 -17.67897 -16.81783 -16.47168 -16.02076 -15.85698 -15.27608 -14.80415 -14.64590 -14.59181 -14.38597 -14.16587 -13.91804 -13.83726 -13.59477 -13.56315 -13.10349 -13.01948 -12.92449 -12.54058 -12.28803 -12.21663 -12.05841 -11.89407 -11.70023 -11.59192 -11.52730 -11.44773 -11.24283 -11.15587 -11.03538 -10.96023 -10.81028 -10.40330 -10.23503 -10.01927 -9.49557 -8.86712 -8.80240 -8.49485 -8.01415 -7.91778 -6.43717 -3.84358 2.37377 2.65561 3.16461 3.25441 3.31317 3.52348 3.87759 3.91196 3.98135 4.07243 4.21352 4.33755 4.46567 4.51665 4.76359 4.81313 4.84408 4.86316 4.94206 5.02309 5.02880 5.09977 5.14034 5.16853 5.25608 5.31841 5.41487 5.44004 5.53621 5.57649 5.58607 5.62513 5.68513 5.75908 5.82041 5.84537 5.88026 5.92647 6.03701 6.09175 6.25699 6.44311 6.52737 6.56516 7.15854 7.28684 7.31660 7.53594 7.91936 8.04422 8.59695 9.16386 9.52268 10.04064 10.73988 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.001921 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.068807 B =14574.839053 C =15166.246434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.506 5.506 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.576 6.576 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.126 4.126 18 C 0.100 3.900 19 N -0.616 5.616 20 C 0.541 3.459 21 O -0.536 6.536 22 C -0.129 4.129 23 H 0.101 0.899 24 C -0.108 4.108 25 C 0.040 3.960 26 N -0.533 5.533 27 C 0.018 3.982 28 C 0.053 3.947 29 C 0.116 3.884 30 H 0.015 0.985 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.028 0.972 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.065 0.935 50 H 0.083 0.917 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.486 -19.429 15.395 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.230 5.230 3 C -0.085 4.085 4 C 0.229 3.771 5 O -0.460 6.460 6 N -0.201 5.201 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.164 4.164 18 C -0.023 4.023 19 N -0.351 5.351 20 C 0.328 3.672 21 O -0.413 6.413 22 C -0.151 4.151 23 H 0.119 0.881 24 C -0.147 4.147 25 C -0.088 4.088 26 N -0.257 5.257 27 C -0.130 4.130 28 C -0.075 4.075 29 C -0.007 4.007 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.611 -20.555 14.014 25.741 hybrid contribution 0.218 2.000 1.135 2.310 sum 6.828 -18.555 15.149 24.908 Atomic orbital electron populations 1.22589 0.86342 1.02283 1.01672 1.61637 1.08862 1.12953 1.39597 1.21873 1.00770 0.88588 0.97296 1.19693 0.85532 0.82960 0.88892 1.90495 1.43875 1.64611 1.47060 1.41861 1.49417 1.10759 1.18036 1.19697 1.32905 0.95453 0.94720 0.87890 1.25261 0.96816 0.96655 0.99242 1.69606 1.38079 1.12222 1.34432 0.85860 0.78011 0.78906 0.81532 1.20446 1.20943 1.19392 1.22780 0.94865 0.93411 0.93042 0.92747 1.22748 0.95690 0.95960 1.02051 1.22173 0.85718 0.94033 1.00414 1.48429 1.11397 1.22393 1.52842 1.19938 0.89555 0.79349 0.78311 1.90716 1.24488 1.64839 1.61239 1.22548 0.95400 0.98182 0.98948 0.88094 1.22613 0.97308 0.92542 1.02216 1.23125 0.93655 1.00800 0.91186 1.63581 1.04379 1.24494 1.33274 1.22576 0.88138 1.01624 1.00668 1.22868 0.95811 0.89693 0.99127 1.22228 0.91783 0.89324 0.97333 0.96604 0.88281 0.91897 0.93419 0.89294 0.77524 0.91887 0.89834 0.88781 0.91460 0.90859 0.90201 0.89087 0.89678 0.93302 0.95346 0.91172 0.91102 0.89843 0.91665 0.89914 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.93 60.07 0.54 0.83 16 2 N -0.51 -7.95 4.40 -233.74 -1.03 -8.97 16 3 C 0.05 0.78 5.36 -4.97 -0.03 0.75 16 4 C 0.44 10.11 7.47 -10.99 -0.08 10.03 16 5 O -0.58 -15.09 13.91 5.55 0.08 -15.02 16 6 N -0.56 -13.91 5.29 -10.96 -0.06 -13.96 16 7 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 11 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 C 0.07 0.83 2.71 -65.56 -0.18 0.65 16 16 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 17 C -0.13 -1.24 5.61 -24.89 -0.14 -1.38 16 18 C 0.10 0.81 6.00 -3.06 -0.02 0.79 16 19 N -0.62 -6.68 3.33 -170.52 -0.57 -7.24 16 20 C 0.54 6.34 7.08 -10.98 -0.08 6.27 16 21 O -0.54 -8.32 16.02 5.56 0.09 -8.23 16 22 C -0.13 -1.08 2.83 -89.94 -0.25 -1.33 16 23 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 24 C -0.11 -0.89 6.13 -24.59 -0.15 -1.04 16 25 C 0.04 0.27 6.73 -2.30 -0.02 0.26 16 26 N -0.53 -4.22 5.44 -239.51 -1.30 -5.52 16 27 C 0.02 0.11 9.12 60.06 0.55 0.66 16 28 C 0.05 0.41 4.97 -2.83 -0.01 0.40 16 29 C 0.12 1.43 5.07 -2.53 -0.01 1.42 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 1.92 5.83 -51.93 -0.30 1.62 16 32 H 0.06 0.90 6.96 -51.93 -0.36 0.54 16 33 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 34 H 0.09 1.32 7.01 -51.93 -0.36 0.96 16 35 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.08 0.70 7.91 -51.93 -0.41 0.29 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.51 6.37 -51.93 -0.33 0.18 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.94 7.49 -51.93 -0.39 0.55 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.28 7.78 -51.93 -0.40 -0.12 16 45 H 0.03 0.15 8.10 -51.93 -0.42 -0.27 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.78 7.81 -51.93 -0.41 0.38 16 49 H 0.06 0.40 6.71 -51.93 -0.35 0.06 16 50 H 0.08 1.13 8.11 -51.93 -0.42 0.70 16 51 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 LS Contribution 398.28 15.07 6.00 6.00 Total: -1.00 -32.54 398.28 -9.85 -42.38 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.63 Total: 7.69 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -0.13 Total: 10.49 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -2.23 Total: -59.11 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.17 Total: -23.24 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.54 -9.85 -42.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194002798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.850 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds