Wall clock time and date at job start Tue Mar 31 2020 22:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99759 * 2 1 4 4 C 1.50702 * 109.47020 * 293.95191 * 3 2 1 5 5 O 1.21294 * 120.00120 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99749 * 180.02562 * 4 3 2 7 7 C 1.37092 * 119.99758 * 179.97438 * 6 4 3 8 8 H 1.08003 * 120.00447 * 0.02562 * 7 6 4 9 9 C 1.38962 * 119.99869 * 179.97438 * 7 6 4 10 10 N 1.31407 * 119.99843 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99814 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47230 * 90.00123 * 11 9 7 13 13 H 1.48504 * 109.46931 * 209.99928 * 11 9 7 14 14 H 1.48503 * 109.47222 * 329.99819 * 11 9 7 15 15 C 1.46898 * 110.99684 * 123.94834 * 2 1 3 16 16 H 1.08994 * 110.91998 * 292.14667 * 15 2 1 17 17 C 1.55164 * 110.99967 * 168.24386 * 15 2 1 18 18 C 1.54330 * 102.94081 * 206.42531 * 17 15 2 19 19 N 1.47026 * 107.26840 * 22.19556 * 18 17 15 20 20 C 1.34775 * 125.64611 * 181.02123 * 19 18 17 21 21 O 1.21283 * 120.00103 * 180.02562 * 20 19 18 22 22 C 1.50704 * 119.99927 * 0.02745 * 20 19 18 23 23 H 1.08998 * 110.62920 * 61.64696 * 22 20 19 24 24 C 1.55137 * 110.70550 * 184.94843 * 22 20 19 25 25 C 1.54910 * 101.65543 * 154.03536 * 24 22 20 26 26 N 1.47844 * 104.79544 * 322.92658 * 25 24 22 27 27 C 1.46895 * 111.00123 * 146.36209 * 26 25 24 28 28 C 1.47445 * 108.56685 * 24.09626 * 26 25 24 29 29 C 1.47422 * 108.70500 * 1.05856 * 19 18 17 30 30 H 1.08992 * 109.47361 * 296.05082 * 1 2 3 31 31 H 1.09002 * 109.46930 * 56.05273 * 1 2 3 32 32 H 1.09001 * 109.46600 * 176.04151 * 1 2 3 33 33 H 1.09002 * 109.46971 * 53.95107 * 3 2 1 34 34 H 1.09000 * 109.46828 * 173.95215 * 3 2 1 35 35 H 0.97006 * 120.00214 * 359.97438 * 6 4 3 36 36 H 0.96998 * 120.00119 * 179.97438 * 10 9 7 37 37 H 1.08999 * 110.71932 * 88.06864 * 17 15 2 38 38 H 1.08995 * 110.72046 * 324.79119 * 17 15 2 39 39 H 1.08998 * 109.88224 * 262.77875 * 18 17 15 40 40 H 1.08998 * 109.88221 * 141.61268 * 18 17 15 41 41 H 1.09003 * 110.99308 * 272.12679 * 24 22 20 42 42 H 1.09005 * 110.99416 * 35.94078 * 24 22 20 43 43 H 1.08998 * 110.37295 * 204.10054 * 25 24 22 44 44 H 1.09002 * 110.46775 * 81.80461 * 25 24 22 45 45 H 1.09000 * 109.47138 * 299.16210 * 27 26 25 46 46 H 1.08997 * 109.47004 * 59.16008 * 27 26 25 47 47 H 1.09003 * 109.47428 * 179.15898 * 27 26 25 48 48 H 1.09002 * 109.89173 * 239.60749 * 28 26 25 49 49 H 1.09004 * 109.89094 * 118.41100 * 28 26 25 50 50 H 1.08996 * 110.36785 * 94.70778 * 29 19 18 51 51 H 1.09004 * 110.36699 * 216.92190 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 8 1.0054 1.4453 -2.1412 6 7 2.0188 3.3199 -1.5237 7 6 1.6931 3.9343 -2.7052 8 1 1.1302 3.3987 -3.4553 9 6 2.0864 5.2468 -2.9372 10 7 2.7701 5.8990 -2.0240 11 14 1.6421 6.0842 -4.5467 12 1 0.3298 6.7647 -4.4048 13 1 2.6844 7.0854 -4.8880 14 1 1.5588 5.0684 -5.6268 15 6 1.9954 -0.7659 1.1377 16 1 1.7765 -0.2633 2.0797 17 6 3.5186 -1.0168 0.9819 18 6 3.7400 -2.3122 1.7911 19 7 2.4440 -3.0015 1.8746 20 6 2.2121 -4.1631 2.5176 21 8 1.0982 -4.6427 2.5205 22 6 3.3371 -4.8659 3.2329 23 1 3.7353 -4.2395 4.0311 24 6 2.8632 -6.2345 3.7890 25 6 4.1923 -7.0287 3.8398 26 7 4.9374 -6.5950 2.6388 27 6 6.3836 -6.5739 2.8957 28 6 4.4519 -5.2607 2.2415 29 6 1.4404 -2.2121 1.1377 30 1 -0.3633 0.4513 0.9232 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3632 -1.0252 -0.0709 33 1 1.5610 1.9274 0.8309 34 1 3.0797 1.3445 0.1083 35 1 2.5241 3.8011 -0.8499 36 1 3.0450 6.8150 -2.1861 37 1 4.0908 -0.1931 1.4088 38 1 3.7796 -1.1671 -0.0656 39 1 4.0951 -2.0679 2.7922 40 1 4.4656 -2.9473 1.2829 41 1 2.4359 -6.1243 4.7857 42 1 2.1520 -6.7064 3.1110 43 1 3.9959 -8.1001 3.7981 44 1 4.7502 -6.7807 4.7427 45 1 6.5997 -5.8698 3.6992 46 1 6.7155 -7.5705 3.1868 47 1 6.9088 -6.2658 1.9916 48 1 4.0510 -5.2984 1.2286 49 1 5.2670 -4.5388 2.2934 50 1 1.3426 -2.5810 0.1167 51 1 0.4780 -2.2509 1.6481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194002798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:28 Heat of formation + Delta-G solvation = -70.661105 kcal Electronic energy + Delta-G solvation = -29778.231444 eV Core-core repulsion = 25711.809319 eV Total energy + Delta-G solvation = -4066.422124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62186 -40.47865 -39.56049 -38.66242 -36.77180 -35.77135 -33.31972 -33.24757 -31.98288 -30.75919 -29.82309 -28.63418 -27.14235 -26.72530 -25.47482 -24.03228 -22.59246 -21.99515 -21.38432 -20.90185 -20.17624 -19.81264 -18.47862 -17.95194 -17.52350 -17.08431 -16.74243 -16.58662 -16.24845 -16.01029 -15.67506 -15.29669 -15.24203 -15.09924 -14.94908 -14.74144 -14.43230 -14.18279 -13.90510 -13.82755 -13.72129 -13.44691 -13.35241 -13.07900 -12.97437 -12.83473 -12.63061 -12.58109 -12.40849 -12.26126 -12.22717 -12.15110 -12.12360 -11.91598 -11.85936 -11.77979 -11.44002 -10.94948 -10.27087 -9.97661 -9.74254 -9.31253 -9.26456 -8.44826 -5.92635 1.38592 1.42698 1.49511 1.54846 1.79215 2.08306 2.30009 2.76421 2.99240 3.21871 3.24330 3.38952 3.45365 3.61607 3.65333 3.86608 4.03834 4.13320 4.17396 4.25761 4.29918 4.32736 4.32858 4.38603 4.46987 4.53247 4.55500 4.56903 4.58003 4.65359 4.70155 4.76708 4.83807 4.85788 4.95128 4.97881 5.02680 5.07856 5.11203 5.17081 5.24060 5.25599 5.43390 5.84670 5.92570 6.04381 6.09316 6.17991 6.43491 6.63453 7.03319 7.15855 7.59617 8.15984 8.72453 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.001921 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.068807 B =14574.839053 C =15166.246434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.524 5.524 3 C 0.060 3.940 4 C 0.441 3.559 5 O -0.615 6.615 6 N -0.574 5.574 7 C -0.330 4.330 8 H 0.077 0.923 9 C -0.013 4.013 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.273 1.273 13 H -0.271 1.271 14 H -0.274 1.274 15 C 0.073 3.927 16 H 0.069 0.931 17 C -0.123 4.123 18 C 0.101 3.899 19 N -0.615 5.615 20 C 0.535 3.465 21 O -0.584 6.584 22 C -0.119 4.119 23 H 0.129 0.871 24 C -0.110 4.110 25 C 0.046 3.954 26 N -0.554 5.554 27 C 0.018 3.982 28 C 0.058 3.942 29 C 0.118 3.882 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.089 0.911 50 H 0.062 0.938 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.873 -19.226 17.351 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.249 5.249 3 C -0.071 4.071 4 C 0.229 3.771 5 O -0.501 6.501 6 N -0.212 5.212 7 C -0.460 4.460 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.199 1.199 15 C -0.036 4.036 16 H 0.087 0.913 17 C -0.161 4.161 18 C -0.021 4.021 19 N -0.348 5.348 20 C 0.325 3.675 21 O -0.464 6.464 22 C -0.141 4.141 23 H 0.147 0.853 24 C -0.149 4.149 25 C -0.081 4.081 26 N -0.279 5.279 27 C -0.130 4.130 28 C -0.070 4.070 29 C -0.005 4.005 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.059 0.941 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.107 0.893 50 H 0.080 0.920 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.042 -20.344 15.995 27.413 hybrid contribution -0.559 1.848 0.520 2.000 sum 8.483 -18.495 16.515 26.207 Atomic orbital electron populations 1.22424 0.87006 1.02263 1.00593 1.61555 1.08566 1.12605 1.42134 1.21730 1.02523 0.88861 0.93944 1.20774 0.83688 0.82220 0.90430 1.90479 1.45157 1.65381 1.49112 1.41913 1.50102 1.11577 1.17568 1.19624 1.34277 0.96366 0.95715 0.90456 1.25985 0.96371 0.96653 1.02243 1.69659 1.38160 1.12611 1.35607 0.84968 0.78180 0.77812 0.77626 1.19830 1.19547 1.19921 1.22797 0.96401 0.92291 0.92102 0.91282 1.22773 0.93846 0.97675 1.01786 1.22375 0.84492 0.93129 1.02110 1.48509 1.12118 1.22159 1.52010 1.20600 0.89795 0.79192 0.77943 1.90694 1.26644 1.66037 1.63068 1.22568 0.94188 0.98045 0.99329 0.85334 1.22586 0.97605 0.92755 1.01935 1.23098 0.92808 1.00576 0.91654 1.63534 1.05677 1.24585 1.34100 1.22615 0.86756 1.02369 1.01229 1.22793 0.96106 0.90413 0.97704 1.22042 0.92098 0.90030 0.96346 0.95082 0.92202 0.91015 0.91410 0.86484 0.76960 0.91362 0.87459 0.90307 0.88348 0.89294 0.89311 0.92026 0.89691 0.91383 0.94072 0.90679 0.90932 0.92115 0.89315 0.91951 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 8.93 127.69 1.14 1.95 16 2 N -0.52 -16.03 4.40 -893.42 -3.93 -19.96 16 3 C 0.06 1.94 5.36 85.56 0.46 2.40 16 4 C 0.44 20.34 7.47 87.66 0.66 20.99 16 5 O -0.62 -33.36 13.91 -3.07 -0.04 -33.40 16 6 N -0.57 -28.65 5.29 -306.98 -1.62 -30.27 16 7 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 10 N -0.92 -48.70 13.05 21.67 0.28 -48.41 16 11 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 C 0.07 1.62 2.71 46.31 0.13 1.74 16 16 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 17 C -0.12 -2.02 5.61 31.79 0.18 -1.84 16 18 C 0.10 1.29 6.00 86.73 0.52 1.81 16 19 N -0.61 -12.39 3.33 -811.78 -2.70 -15.09 16 20 C 0.53 12.14 7.08 87.66 0.62 12.76 16 21 O -0.58 -18.62 16.02 -3.04 -0.05 -18.66 16 22 C -0.12 -1.74 2.83 -10.36 -0.03 -1.77 16 23 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 24 C -0.11 -1.71 6.13 31.98 0.20 -1.51 16 25 C 0.05 0.54 6.73 86.77 0.58 1.12 16 26 N -0.55 -7.61 5.44 -911.67 -4.96 -12.58 16 27 C 0.02 0.16 9.12 127.69 1.16 1.33 16 28 C 0.06 0.77 4.97 86.65 0.43 1.20 16 29 C 0.12 2.87 5.07 86.86 0.44 3.31 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 2.41 5.83 -2.39 -0.01 2.40 16 32 H 0.07 2.12 6.96 -2.39 -0.02 2.10 16 33 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 34 H 0.12 3.14 7.01 -2.39 -0.02 3.12 16 35 H 0.40 18.64 7.90 -92.70 -0.73 17.90 16 36 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.11 1.31 7.91 -2.39 -0.02 1.29 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 0.91 6.37 -2.39 -0.02 0.90 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.32 7.49 -2.38 -0.02 1.30 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 0.56 7.78 -2.39 -0.02 0.54 16 45 H 0.04 0.27 8.10 -2.39 -0.02 0.25 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.06 1.08 7.81 -2.39 -0.02 1.07 16 49 H 0.09 0.75 6.71 -2.39 -0.02 0.73 16 50 H 0.06 1.76 8.11 -2.39 -0.02 1.74 16 51 H 0.06 1.72 7.93 -2.38 -0.02 1.70 16 Total: -1.00 -73.75 398.28 -3.04 -76.78 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.19 Total: 31.32 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 7.77 Total: 25.62 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -12.93 Total: -126.30 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.09 Total: -52.06 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -73.75 -3.04 -76.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194002798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.124 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds