Wall clock time and date at job start Tue Mar 31 2020 22:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47449 * 110.99907 * 2 1 4 4 C 1.54311 * 107.23418 * 123.25722 * 3 2 1 5 5 C 1.55151 * 103.01892 * 22.28649 * 4 3 2 6 6 H 1.08997 * 110.98807 * 82.43233 * 5 4 3 7 7 C 1.50701 * 110.98988 * 206.25376 * 5 4 3 8 8 O 1.21281 * 120.00000 * 359.97438 * 7 5 4 9 9 N 1.34779 * 119.99719 * 179.97438 * 7 5 4 10 10 C 1.47608 * 118.74805 * 359.73189 * 9 7 5 11 11 C 1.54169 * 111.09364 * 138.19566 * 10 9 7 12 12 C 1.51274 * 109.77891 * 320.24623 * 11 10 9 13 13 N 1.46204 * 109.10079 * 92.30290 * 12 11 10 14 14 C 1.46901 * 110.99720 * 144.77598 * 13 12 11 15 15 C 1.50699 * 109.46976 * 197.08238 * 14 13 12 16 16 O 1.21293 * 120.00143 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00118 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00170 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99841 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99993 * 179.97438 * 18 17 15 21 21 N 1.31407 * 119.99864 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00030 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46950 * 90.00280 * 22 20 18 24 24 H 1.48495 * 109.47073 * 210.00131 * 22 20 18 25 25 H 1.48504 * 109.47403 * 330.00175 * 22 20 18 26 26 C 1.41440 * 116.34689 * 272.97754 * 13 12 11 27 27 C 1.44879 * 118.74117 * 180.02562 * 9 7 5 28 28 C 1.47840 * 111.00205 * 120.84418 * 2 1 3 29 29 H 1.09002 * 109.47401 * 59.87266 * 1 2 3 30 30 H 1.09001 * 109.46874 * 299.87279 * 1 2 3 31 31 H 1.09004 * 109.46970 * 179.87412 * 1 2 3 32 32 H 1.09005 * 109.88768 * 242.66778 * 3 2 1 33 33 H 1.08998 * 109.88624 * 3.85377 * 3 2 1 34 34 H 1.09000 * 110.70783 * 140.66426 * 4 3 2 35 35 H 1.08994 * 110.70948 * 263.73152 * 4 3 2 36 36 H 1.08991 * 109.11740 * 258.78875 * 10 9 7 37 37 H 1.09004 * 109.11373 * 17.84902 * 10 9 7 38 38 H 1.09001 * 109.45616 * 200.10460 * 11 10 9 39 39 H 1.09001 * 109.26193 * 80.27351 * 11 10 9 40 40 H 1.08995 * 109.53338 * 332.41744 * 12 11 10 41 41 H 1.08996 * 109.59494 * 212.22822 * 12 11 10 42 42 H 1.09000 * 109.47292 * 317.07993 * 14 13 12 43 43 H 1.08998 * 109.47684 * 77.08051 * 14 13 12 44 44 H 0.97001 * 119.99914 * 359.97438 * 17 15 14 45 45 H 0.97003 * 120.00170 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.38385 * 303.32607 * 26 13 12 47 47 H 1.08999 * 109.29970 * 183.58984 * 26 13 12 48 48 H 1.08998 * 109.44024 * 29.79346 * 27 9 7 49 49 H 1.09011 * 109.43339 * 149.70902 * 27 9 7 50 50 H 1.09000 * 110.37356 * 332.46679 * 28 2 1 51 51 H 1.08998 * 110.37307 * 94.80848 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3766 0.0000 4 6 2.9158 1.5137 1.2324 5 6 3.3048 0.0444 1.5437 6 1 4.1302 -0.2832 0.9117 7 6 3.6432 -0.1270 3.0022 8 8 3.5883 0.8237 3.7533 9 7 4.0070 -1.3368 3.4719 10 6 4.0588 -2.4760 2.5347 11 6 5.3050 -3.3472 2.7887 12 6 6.4931 -2.4634 3.0980 13 7 6.5901 -2.2815 4.5455 14 6 7.9934 -2.2111 4.9743 15 6 8.0768 -2.4452 6.4606 16 8 7.0665 -2.6500 7.1000 17 7 9.2738 -2.4259 7.0798 18 6 9.3496 -2.6383 8.4321 19 1 8.4501 -2.8215 9.0012 20 6 10.5837 -2.6190 9.0703 21 7 10.6563 -2.8221 10.3666 22 14 12.1396 -2.3043 8.0856 23 1 12.4149 -0.8456 8.0479 24 1 13.2807 -3.0070 8.7251 25 1 11.9600 -2.8101 6.7010 26 6 5.8378 -1.2180 5.0963 27 6 4.3259 -1.4708 4.8788 28 6 1.9989 -0.7076 1.1850 29 1 -0.3634 0.5158 -0.8888 30 1 -0.3633 0.5119 0.8911 31 1 -0.3633 -1.0277 -0.0023 32 1 2.5697 1.5541 -0.9106 33 1 1.1755 2.0892 0.0689 34 1 3.8000 2.1034 0.9905 35 1 2.3753 1.9574 2.0685 36 1 3.1625 -3.0832 2.6610 37 1 4.0905 -2.0967 1.5133 38 1 5.5179 -3.9438 1.9016 39 1 5.1151 -4.0088 3.6339 40 1 6.3614 -1.4943 2.6170 41 1 7.4043 -2.9331 2.7279 42 1 8.5713 -2.9745 4.4533 43 1 8.3965 -1.2263 4.7384 44 1 10.0816 -2.2618 6.5686 45 1 11.5178 -2.8090 10.8121 46 1 6.1220 -0.2844 4.6108 47 1 6.0427 -1.1472 6.1645 48 1 3.7500 -0.7444 5.4521 49 1 4.0754 -2.4777 5.2132 50 1 1.2890 -0.6502 2.0101 51 1 2.2148 -1.7477 0.9407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198097782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:37 Heat of formation + Delta-G solvation = -34.258906 kcal Electronic energy + Delta-G solvation = -30663.262821 eV Core-core repulsion = 26598.419215 eV Total energy + Delta-G solvation = -4064.843607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91040 -39.31632 -38.41571 -37.37375 -35.22164 -33.88937 -32.87399 -32.33272 -31.67501 -30.12388 -28.82621 -27.01443 -26.20515 -25.67844 -24.03334 -23.13123 -21.41770 -21.28573 -20.61196 -19.42048 -18.90657 -18.29662 -17.59081 -16.56029 -16.46977 -16.03898 -15.56626 -15.52614 -15.13843 -14.93589 -14.71077 -14.47023 -14.05501 -14.02249 -13.88086 -13.65111 -13.33919 -13.23444 -13.17750 -12.79622 -12.49711 -12.26158 -12.05108 -11.97052 -11.81603 -11.75084 -11.67169 -11.53163 -11.45343 -11.26664 -11.11412 -10.99920 -10.93894 -10.86602 -10.59302 -9.97203 -9.86734 -9.52570 -8.81398 -8.74072 -8.52122 -8.17095 -7.81301 -6.30609 -3.81825 2.45713 2.85760 3.02533 3.07016 3.15200 3.55967 3.74360 3.91282 4.06652 4.10642 4.24398 4.37278 4.57738 4.73787 4.79564 4.82191 4.86919 4.92541 5.01425 5.02979 5.05564 5.19402 5.22511 5.23780 5.35902 5.42296 5.43903 5.46640 5.50219 5.52130 5.62561 5.67313 5.68451 5.69589 5.80804 5.83759 5.86144 5.93981 6.13095 6.16658 6.30202 6.43891 6.55181 6.61865 7.23024 7.25975 7.59353 7.67433 8.06348 8.15356 8.60759 8.95848 9.43164 9.83901 10.82499 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027974 B = 0.002234 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.690918 B =12528.530067 C =12626.591121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.039 3.961 4 C -0.123 4.123 5 C -0.121 4.121 6 H 0.109 0.891 7 C 0.515 3.485 8 O -0.537 6.537 9 N -0.603 5.603 10 C 0.105 3.895 11 C -0.133 4.133 12 C 0.074 3.926 13 N -0.540 5.540 14 C 0.051 3.949 15 C 0.451 3.549 16 O -0.559 6.559 17 N -0.591 5.591 18 C -0.303 4.303 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.061 3.939 27 C 0.121 3.879 28 C 0.053 3.947 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.015 0.985 47 H 0.111 0.889 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.052 0.948 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.535 3.508 -24.878 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.088 4.088 4 C -0.162 4.162 5 C -0.143 4.143 6 H 0.127 0.873 7 C 0.302 3.698 8 O -0.414 6.414 9 N -0.335 5.335 10 C -0.018 4.018 11 C -0.171 4.171 12 C -0.054 4.054 13 N -0.265 5.265 14 C -0.080 4.080 15 C 0.237 3.763 16 O -0.441 6.441 17 N -0.231 5.231 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.068 4.068 27 C -0.002 4.002 28 C -0.075 4.075 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.033 0.967 47 H 0.129 0.871 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.070 0.930 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.181 3.208 -24.100 28.663 hybrid contribution 1.541 1.197 -0.264 1.969 sum -13.640 4.405 -24.364 28.268 Atomic orbital electron populations 1.22566 0.87351 1.02276 1.00822 1.63625 1.08264 1.14454 1.39342 1.22904 0.98105 0.89255 0.98557 1.22665 1.00455 0.94813 0.98236 1.22465 0.99595 0.98153 0.94049 0.87349 1.20401 0.76859 0.82782 0.89727 1.90706 1.52768 1.39102 1.58801 1.47956 1.66847 1.08698 1.10038 1.22222 0.98930 0.87921 0.92694 1.21962 0.93871 0.98337 1.02969 1.21508 0.98277 0.98427 0.87203 1.57774 1.09783 1.48097 1.10835 1.21858 0.89281 1.00771 0.96054 1.19722 0.84172 0.84113 0.88316 1.90521 1.34514 1.52536 1.66513 1.42233 1.06642 1.65079 1.09131 1.19422 0.96701 1.45903 0.81181 0.86258 1.25040 0.97822 0.97701 0.95656 1.69620 1.25871 1.48649 1.08010 0.86675 0.83698 0.79114 0.79915 1.19686 1.20197 1.19515 1.21806 0.92590 0.89809 1.02641 1.21621 0.95538 1.03221 0.79850 1.23105 0.94041 0.98704 0.91634 0.91147 0.95294 0.91206 0.90121 0.92320 0.90190 0.89942 0.91508 0.90057 0.90281 0.89512 0.94670 0.91053 0.89336 0.93516 0.79767 0.91638 0.96652 0.87090 0.89620 0.89442 0.92981 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.12 60.07 0.55 0.67 16 2 N -0.53 -4.14 5.44 -239.52 -1.30 -5.44 16 3 C 0.04 0.29 6.90 -2.84 -0.02 0.27 16 4 C -0.12 -1.10 6.07 -24.91 -0.15 -1.25 16 5 C -0.12 -1.09 2.38 -89.63 -0.21 -1.30 16 6 H 0.11 0.85 7.26 -51.93 -0.38 0.47 16 7 C 0.52 6.40 7.00 -10.98 -0.08 6.32 16 8 O -0.54 -8.82 15.15 5.56 0.08 -8.73 16 9 N -0.60 -6.96 2.17 -172.19 -0.37 -7.34 16 10 C 0.10 0.86 4.95 -2.82 -0.01 0.85 16 11 C -0.13 -1.20 5.79 -26.99 -0.16 -1.36 16 12 C 0.07 0.84 5.32 -5.07 -0.03 0.81 16 13 N -0.54 -8.31 3.60 -240.91 -0.87 -9.17 16 14 C 0.05 0.85 5.44 -4.98 -0.03 0.82 16 15 C 0.45 10.07 7.37 -10.98 -0.08 9.99 16 16 O -0.56 -14.52 13.96 5.55 0.08 -14.44 16 17 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 18 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 22 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 26 C 0.06 1.01 5.02 -5.72 -0.03 0.98 16 27 C 0.12 1.72 5.51 -3.95 -0.02 1.70 16 28 C 0.05 0.42 5.49 -2.30 -0.01 0.40 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.19 8.10 -51.93 -0.42 -0.23 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.40 7.58 -51.93 -0.39 0.00 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.89 7.40 -51.93 -0.38 0.51 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.53 4.99 -51.93 -0.26 0.27 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.96 7.98 -51.93 -0.41 0.54 16 40 H 0.04 0.41 7.33 -51.93 -0.38 0.03 16 41 H 0.07 0.72 7.36 -51.93 -0.38 0.34 16 42 H 0.09 1.26 7.57 -51.93 -0.39 0.87 16 43 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 44 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.02 0.27 8.12 -51.93 -0.42 -0.16 16 47 H 0.11 2.23 5.61 -51.93 -0.29 1.94 16 48 H 0.09 1.31 7.28 -51.93 -0.38 0.93 16 49 H 0.09 1.24 8.11 -51.92 -0.42 0.82 16 50 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 51 H 0.09 0.59 6.64 -51.93 -0.35 0.24 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -33.82 387.28 -9.48 -43.31 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -8.41 Total: 9.12 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -0.53 Total: 11.23 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -1.83 Total: -61.00 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.16 Total: -23.17 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.82 -9.48 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198097782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.047 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds