Wall clock time and date at job start Tue Mar 31 2020 22:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47449 * 110.99907 * 2 1 4 4 C 1.54311 * 107.23418 * 123.25722 * 3 2 1 5 5 C 1.55151 * 103.01892 * 22.28649 * 4 3 2 6 6 H 1.08997 * 110.98807 * 82.43233 * 5 4 3 7 7 C 1.50701 * 110.98988 * 206.25376 * 5 4 3 8 8 O 1.21281 * 120.00000 * 359.97438 * 7 5 4 9 9 N 1.34779 * 119.99719 * 179.97438 * 7 5 4 10 10 C 1.47608 * 118.74805 * 359.73189 * 9 7 5 11 11 C 1.54169 * 111.09364 * 138.19566 * 10 9 7 12 12 C 1.51274 * 109.77891 * 320.24623 * 11 10 9 13 13 N 1.46204 * 109.10079 * 92.30290 * 12 11 10 14 14 C 1.46901 * 110.99720 * 144.77598 * 13 12 11 15 15 C 1.50699 * 109.46976 * 197.08238 * 14 13 12 16 16 O 1.21293 * 120.00143 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00118 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00170 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99841 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99993 * 179.97438 * 18 17 15 21 21 N 1.31407 * 119.99864 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00030 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46950 * 90.00280 * 22 20 18 24 24 H 1.48495 * 109.47073 * 210.00131 * 22 20 18 25 25 H 1.48504 * 109.47403 * 330.00175 * 22 20 18 26 26 C 1.41440 * 116.34689 * 272.97754 * 13 12 11 27 27 C 1.44879 * 118.74117 * 180.02562 * 9 7 5 28 28 C 1.47840 * 111.00205 * 120.84418 * 2 1 3 29 29 H 1.09002 * 109.47401 * 59.87266 * 1 2 3 30 30 H 1.09001 * 109.46874 * 299.87279 * 1 2 3 31 31 H 1.09004 * 109.46970 * 179.87412 * 1 2 3 32 32 H 1.09005 * 109.88768 * 242.66778 * 3 2 1 33 33 H 1.08998 * 109.88624 * 3.85377 * 3 2 1 34 34 H 1.09000 * 110.70783 * 140.66426 * 4 3 2 35 35 H 1.08994 * 110.70948 * 263.73152 * 4 3 2 36 36 H 1.08991 * 109.11740 * 258.78875 * 10 9 7 37 37 H 1.09004 * 109.11373 * 17.84902 * 10 9 7 38 38 H 1.09001 * 109.45616 * 200.10460 * 11 10 9 39 39 H 1.09001 * 109.26193 * 80.27351 * 11 10 9 40 40 H 1.08995 * 109.53338 * 332.41744 * 12 11 10 41 41 H 1.08996 * 109.59494 * 212.22822 * 12 11 10 42 42 H 1.09000 * 109.47292 * 317.07993 * 14 13 12 43 43 H 1.08998 * 109.47684 * 77.08051 * 14 13 12 44 44 H 0.97001 * 119.99914 * 359.97438 * 17 15 14 45 45 H 0.97003 * 120.00170 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.38385 * 303.32607 * 26 13 12 47 47 H 1.08999 * 109.29970 * 183.58984 * 26 13 12 48 48 H 1.08998 * 109.44024 * 29.79346 * 27 9 7 49 49 H 1.09011 * 109.43339 * 149.70902 * 27 9 7 50 50 H 1.09000 * 110.37356 * 332.46679 * 28 2 1 51 51 H 1.08998 * 110.37307 * 94.80848 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3766 0.0000 4 6 2.9158 1.5137 1.2324 5 6 3.3048 0.0444 1.5437 6 1 4.1302 -0.2832 0.9117 7 6 3.6432 -0.1270 3.0022 8 8 3.5883 0.8237 3.7533 9 7 4.0070 -1.3368 3.4719 10 6 4.0588 -2.4760 2.5347 11 6 5.3050 -3.3472 2.7887 12 6 6.4931 -2.4634 3.0980 13 7 6.5901 -2.2815 4.5455 14 6 7.9934 -2.2111 4.9743 15 6 8.0768 -2.4452 6.4606 16 8 7.0665 -2.6500 7.1000 17 7 9.2738 -2.4259 7.0798 18 6 9.3496 -2.6383 8.4321 19 1 8.4501 -2.8215 9.0012 20 6 10.5837 -2.6190 9.0703 21 7 10.6563 -2.8221 10.3666 22 14 12.1396 -2.3043 8.0856 23 1 12.4149 -0.8456 8.0479 24 1 13.2807 -3.0070 8.7251 25 1 11.9600 -2.8101 6.7010 26 6 5.8378 -1.2180 5.0963 27 6 4.3259 -1.4708 4.8788 28 6 1.9989 -0.7076 1.1850 29 1 -0.3634 0.5158 -0.8888 30 1 -0.3633 0.5119 0.8911 31 1 -0.3633 -1.0277 -0.0023 32 1 2.5697 1.5541 -0.9106 33 1 1.1755 2.0892 0.0689 34 1 3.8000 2.1034 0.9905 35 1 2.3753 1.9574 2.0685 36 1 3.1625 -3.0832 2.6610 37 1 4.0905 -2.0967 1.5133 38 1 5.5179 -3.9438 1.9016 39 1 5.1151 -4.0088 3.6339 40 1 6.3614 -1.4943 2.6170 41 1 7.4043 -2.9331 2.7279 42 1 8.5713 -2.9745 4.4533 43 1 8.3965 -1.2263 4.7384 44 1 10.0816 -2.2618 6.5686 45 1 11.5178 -2.8090 10.8121 46 1 6.1220 -0.2844 4.6108 47 1 6.0427 -1.1472 6.1645 48 1 3.7500 -0.7444 5.4521 49 1 4.0754 -2.4777 5.2132 50 1 1.2890 -0.6502 2.0101 51 1 2.2148 -1.7477 0.9407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198097782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:37 Heat of formation + Delta-G solvation = -61.153055 kcal Electronic energy + Delta-G solvation = -30664.429039 eV Core-core repulsion = 26598.419215 eV Total energy + Delta-G solvation = -4066.009824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85331 -40.64467 -39.49753 -38.59342 -36.43262 -35.79280 -33.80244 -33.67619 -33.11926 -31.07308 -29.83441 -28.19813 -26.98360 -26.77945 -25.61248 -24.11716 -22.25712 -21.93189 -21.63487 -21.26378 -20.29531 -19.71899 -18.48398 -17.88951 -17.38942 -17.25215 -16.83040 -16.59655 -16.32006 -16.16509 -15.96639 -15.62169 -15.19790 -15.03712 -14.87012 -14.57853 -14.50730 -14.44217 -14.24689 -14.11518 -13.94953 -13.50102 -13.14014 -13.02730 -12.75697 -12.67363 -12.58886 -12.51850 -12.44173 -12.38844 -12.32011 -12.15500 -11.98379 -11.87661 -11.73164 -11.67308 -11.46826 -10.87480 -10.37016 -10.22925 -9.70494 -9.37623 -9.09151 -8.40953 -6.01325 1.29246 1.35022 1.43756 1.50316 1.93852 1.97224 2.22788 2.62025 2.95262 3.15186 3.21285 3.36089 3.58980 3.67273 3.85332 3.96002 4.04675 4.13370 4.16324 4.22385 4.23513 4.33103 4.33526 4.41296 4.44635 4.48046 4.51665 4.54115 4.61135 4.68561 4.76282 4.82234 4.85163 4.89358 4.91143 4.99676 5.02465 5.03511 5.13783 5.20114 5.33998 5.53954 5.61427 5.86386 5.92236 6.00011 6.09928 6.29645 6.52579 6.60635 6.89312 7.10149 7.40824 7.98181 8.76722 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027974 B = 0.002234 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.690918 B =12528.530067 C =12626.591121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.535 5.535 3 C 0.044 3.956 4 C -0.125 4.125 5 C -0.112 4.112 6 H 0.133 0.867 7 C 0.511 3.489 8 O -0.587 6.587 9 N -0.599 5.599 10 C 0.100 3.900 11 C -0.128 4.128 12 C 0.071 3.929 13 N -0.553 5.553 14 C 0.062 3.938 15 C 0.449 3.551 16 O -0.603 6.603 17 N -0.593 5.593 18 C -0.325 4.325 19 H 0.055 0.945 20 C -0.018 4.018 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.261 1.261 24 H -0.275 1.275 25 H -0.229 1.229 26 C 0.074 3.926 27 C 0.132 3.868 28 C 0.058 3.942 29 H 0.080 0.920 30 H 0.020 0.980 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.068 0.932 44 H 0.389 0.611 45 H 0.278 0.722 46 H 0.005 0.995 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.037 0.963 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.259 2.760 -30.235 33.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.259 5.259 3 C -0.084 4.084 4 C -0.163 4.163 5 C -0.133 4.133 6 H 0.150 0.850 7 C 0.300 3.700 8 O -0.467 6.467 9 N -0.330 5.330 10 C -0.021 4.021 11 C -0.166 4.166 12 C -0.056 4.056 13 N -0.278 5.278 14 C -0.069 4.069 15 C 0.237 3.763 16 O -0.487 6.487 17 N -0.236 5.236 18 C -0.454 4.454 19 H 0.073 0.927 20 C -0.216 4.216 21 N -0.576 5.576 22 Si 0.785 3.215 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.152 1.152 26 C -0.056 4.056 27 C 0.007 3.993 28 C -0.070 4.070 29 H 0.099 0.901 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.113 0.887 42 H 0.144 0.856 43 H 0.085 0.915 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.023 0.977 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.104 0.896 50 H 0.055 0.945 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.929 2.428 -29.521 32.732 hybrid contribution 0.979 1.418 1.473 2.267 sum -12.950 3.846 -28.048 31.132 Atomic orbital electron populations 1.22628 0.86653 1.02944 1.00960 1.63719 1.08981 1.14421 1.38826 1.22914 0.98006 0.89398 0.98071 1.22644 1.00717 0.94872 0.98115 1.22471 1.00979 0.98481 0.91418 0.84974 1.21066 0.75821 0.82138 0.90970 1.90689 1.54870 1.40822 1.60366 1.48017 1.66057 1.09775 1.09157 1.22544 0.99569 0.86945 0.93025 1.21964 0.93024 0.97867 1.03765 1.21714 1.00552 0.99301 0.84000 1.57786 1.08931 1.47328 1.13772 1.21829 0.90820 1.03056 0.91160 1.20993 0.82942 0.81422 0.90939 1.90513 1.36127 1.53638 1.68427 1.42063 1.08054 1.65955 1.07482 1.18983 0.95187 1.47905 0.83325 0.92688 1.26121 1.02109 0.96475 0.96890 1.69807 1.27416 1.49836 1.10570 0.85367 0.76890 0.79512 0.79765 1.18530 1.19974 1.15222 1.21485 0.94241 0.90042 0.99838 1.21260 0.93846 1.02264 0.81888 1.23127 0.92901 0.99659 0.91332 0.90078 0.96115 0.90332 0.88754 0.92014 0.89836 0.92627 0.89812 0.87180 0.86460 0.91684 0.94380 0.88683 0.85554 0.91461 0.77609 0.91218 0.97670 0.91718 0.91758 0.89626 0.94498 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.12 127.69 1.16 1.34 16 2 N -0.54 -6.81 5.44 -911.69 -4.96 -11.78 16 3 C 0.04 0.55 6.90 86.64 0.60 1.15 16 4 C -0.12 -2.10 6.07 31.78 0.19 -1.90 16 5 C -0.11 -1.76 2.38 -10.15 -0.02 -1.79 16 6 H 0.13 1.51 7.26 -2.39 -0.02 1.49 16 7 C 0.51 12.40 7.00 87.66 0.61 13.02 16 8 O -0.59 -20.09 15.15 -3.03 -0.05 -20.14 16 9 N -0.60 -13.18 2.17 -817.08 -1.78 -14.96 16 10 C 0.10 1.29 4.95 86.56 0.43 1.72 16 11 C -0.13 -1.81 5.79 30.43 0.18 -1.63 16 12 C 0.07 1.34 5.32 85.87 0.46 1.80 16 13 N -0.55 -16.26 3.60 -916.10 -3.30 -19.56 16 14 C 0.06 1.91 5.44 85.56 0.47 2.37 16 15 C 0.45 20.35 7.37 87.66 0.65 21.00 16 16 O -0.60 -33.19 13.96 -3.07 -0.04 -33.23 16 17 N -0.59 -28.19 5.09 -306.98 -1.56 -29.76 16 18 C -0.32 -19.18 10.16 84.04 0.85 -18.32 16 19 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 20 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 21 N -0.94 -57.01 13.96 21.66 0.30 -56.71 16 22 Si 0.96 39.16 27.74 68.60 1.90 41.06 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 26 C 0.07 2.53 5.02 87.92 0.44 2.97 16 27 C 0.13 3.91 5.51 87.31 0.48 4.39 16 28 C 0.06 0.75 5.49 86.78 0.48 1.23 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.02 0.25 8.10 -2.39 -0.02 0.23 16 31 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.06 0.74 7.58 -2.39 -0.02 0.72 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.24 7.40 -2.39 -0.02 1.22 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 0.84 4.99 -2.39 -0.01 0.83 16 38 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.26 7.98 -2.39 -0.02 1.25 16 40 H 0.04 0.73 7.33 -2.39 -0.02 0.71 16 41 H 0.09 1.40 7.36 -2.39 -0.02 1.38 16 42 H 0.13 3.01 7.57 -2.39 -0.02 2.99 16 43 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 44 H 0.39 15.29 5.76 -92.71 -0.53 14.75 16 45 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 46 H 0.01 0.19 8.12 -2.39 -0.02 0.17 16 47 H 0.06 2.81 5.61 -2.39 -0.01 2.79 16 48 H 0.06 2.16 7.28 -2.39 -0.02 2.14 16 49 H 0.09 2.54 8.11 -2.38 -0.02 2.52 16 50 H 0.04 0.60 7.67 -2.39 -0.02 0.58 16 51 H 0.11 0.97 6.64 -2.39 -0.02 0.96 16 Total: -1.00 -83.00 387.28 -1.71 -84.71 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.34 Total: 33.56 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: 7.44 Total: 26.80 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -11.30 Total: -132.76 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.09 Total: -53.37 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.90 Total: 41.06 kcal Total: -83.00 -1.71 -84.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198097782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.554 kcal (2) G-P(sol) polarization free energy of solvation -82.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds