Wall clock time and date at job start Tue Mar 31 2020 22:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48561 * 111.00075 * 2 1 4 4 C 1.54379 * 104.59322 * 200.95913 * 3 2 1 5 5 C 1.54259 * 105.06130 * 23.85447 * 4 3 2 6 6 C 1.48559 * 110.99819 * 244.57935 * 2 1 3 7 7 H 1.09008 * 110.51009 * 40.21687 * 6 2 1 8 8 C 1.50698 * 110.41446 * 277.82046 * 6 2 1 9 9 O 1.21280 * 119.99912 * 344.82592 * 8 6 2 10 10 N 1.34777 * 119.99915 * 164.82711 * 8 6 2 11 11 C 1.46928 * 120.63052 * 179.97438 * 10 8 6 12 12 C 1.53187 * 108.77623 * 126.36901 * 11 10 8 13 13 C 1.53036 * 109.33909 * 54.61900 * 12 11 10 14 14 N 1.46901 * 109.46374 * 178.63000 * 13 12 11 15 15 C 1.46899 * 111.00139 * 205.00123 * 14 13 12 16 16 C 1.50705 * 109.46756 * 179.97438 * 15 14 13 17 17 O 1.21288 * 120.00162 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99926 * 179.97438 * 16 15 14 19 19 C 1.37090 * 120.00052 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99970 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99814 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00503 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47148 * 59.99902 * 23 21 19 25 25 H 1.48502 * 109.46944 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46884 * 299.99800 * 23 21 19 27 27 C 1.53042 * 109.54058 * 298.68652 * 13 12 11 28 28 C 1.46927 * 120.63332 * 359.97438 * 10 8 6 29 29 H 1.09004 * 109.47072 * 175.41924 * 1 2 3 30 30 H 1.08999 * 109.47187 * 295.41464 * 1 2 3 31 31 H 1.08994 * 109.47632 * 55.41545 * 1 2 3 32 32 H 1.08998 * 110.41076 * 82.18456 * 3 2 1 33 33 H 1.08996 * 110.40965 * 319.73784 * 3 2 1 34 34 H 1.08995 * 110.32993 * 264.95612 * 4 3 2 35 35 H 1.09006 * 110.32093 * 142.75051 * 4 3 2 36 36 H 1.08994 * 110.32368 * 241.09695 * 5 4 3 37 37 H 1.09003 * 110.40745 * 118.93573 * 5 4 3 38 38 H 1.09000 * 109.58414 * 6.58067 * 11 10 8 39 39 H 1.08999 * 109.58551 * 246.15992 * 11 10 8 40 40 H 1.09002 * 109.49796 * 174.58834 * 12 11 10 41 41 H 1.09000 * 109.49812 * 294.65558 * 12 11 10 42 42 H 1.08998 * 109.46343 * 58.67009 * 13 12 11 43 43 H 1.00902 * 110.99856 * 81.04476 * 14 13 12 44 44 H 1.09000 * 109.47147 * 299.99951 * 15 14 13 45 45 H 1.08997 * 109.46951 * 60.00315 * 15 14 13 46 46 H 0.97003 * 119.99339 * 0.02562 * 18 16 15 47 47 H 0.96990 * 120.00341 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.46473 * 301.36154 * 27 13 12 49 49 H 1.09000 * 109.52301 * 181.30261 * 27 13 12 50 50 H 1.08999 * 109.58621 * 353.42243 * 28 10 8 51 51 H 1.09005 * 109.58884 * 113.83819 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5344 5 6 3.4432 -0.0539 -1.3585 6 6 2.0013 -0.5954 -1.2527 7 1 1.4103 -0.2729 -2.1100 8 6 2.0103 -2.0993 -1.1575 9 8 1.8828 -2.6394 -0.0791 10 7 2.1599 -2.8441 -2.2707 11 6 2.1712 -4.3113 -2.1939 12 6 1.1234 -4.8640 -3.1650 13 6 1.3862 -4.3060 -4.5656 14 7 0.4028 -4.8600 -5.5057 15 6 0.9264 -4.8564 -6.8782 16 6 -0.1077 -5.4310 -7.8118 17 8 -1.1756 -5.8070 -7.3766 18 7 0.1541 -5.5272 -9.1305 19 6 -0.7864 -6.0504 -9.9797 20 1 -1.7373 -6.3852 -9.5921 21 6 -0.5162 -6.1500 -11.3390 22 7 0.6409 -5.7431 -11.8106 23 14 -1.7980 -6.8622 -12.4963 24 1 -3.0322 -6.0387 -12.4352 25 1 -1.2684 -6.8592 -13.8837 26 1 -2.1120 -8.2556 -12.0899 27 6 1.2650 -2.7806 -4.5399 28 6 2.3149 -2.2043 -3.5843 29 1 -0.3633 -1.0244 -0.0821 30 1 -0.3633 0.4410 0.9282 31 1 -0.3634 0.5833 -0.8460 32 1 2.0079 1.7916 1.0121 33 1 1.4098 2.0211 -0.6602 34 1 4.1483 1.1747 0.2934 35 1 3.6936 2.0996 -1.1699 36 1 4.1483 -0.7693 -0.9352 37 1 3.6942 0.1538 -2.3987 38 1 1.9303 -4.6259 -1.1784 39 1 3.1577 -4.6841 -2.4696 40 1 1.1875 -5.9519 -3.1889 41 1 0.1283 -4.5653 -2.8353 42 1 2.3905 -4.5846 -4.8850 43 1 -0.4716 -4.3594 -5.4510 44 1 1.1573 -3.8337 -7.1763 45 1 1.8320 -5.4613 -6.9231 46 1 1.0083 -5.2268 -9.4784 47 1 0.8293 -5.8123 -12.7595 48 1 0.2686 -2.5011 -4.1975 49 1 1.4295 -2.3852 -5.5422 50 1 2.1688 -1.1286 -3.4863 51 1 3.3131 -2.4055 -3.9733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199826278.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:09 Heat of formation + Delta-G solvation = -84.007220 kcal Electronic energy + Delta-G solvation = -29767.731182 eV Core-core repulsion = 25700.730326 eV Total energy + Delta-G solvation = -4067.000855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.62326 -40.26445 -39.52724 -38.41610 -36.32452 -35.75131 -33.37663 -33.23271 -32.68836 -31.89183 -30.24361 -28.29428 -26.72250 -26.26638 -24.70265 -24.34298 -22.95670 -21.90955 -21.55927 -21.03061 -20.05367 -19.80566 -18.59741 -17.70381 -17.20798 -16.91749 -16.79092 -16.37261 -16.11388 -15.95549 -15.71280 -15.44680 -15.41107 -15.15420 -14.95837 -14.76298 -14.58239 -14.27869 -13.92483 -13.68102 -13.55952 -13.47520 -13.29330 -13.11942 -12.95728 -12.85489 -12.67492 -12.54253 -12.42882 -12.36316 -12.22379 -12.12590 -12.05139 -11.84886 -11.59056 -11.52786 -11.49424 -10.74274 -10.34064 -10.01132 -9.71394 -9.49258 -9.24715 -8.46345 -5.94857 1.39772 1.41993 1.52514 1.57817 1.89387 2.06357 2.29308 2.90768 3.00334 3.21051 3.40794 3.50578 3.58558 3.69359 3.85635 3.93290 3.99853 4.03380 4.18343 4.23886 4.32635 4.34364 4.37293 4.41531 4.46123 4.47978 4.53349 4.60317 4.66939 4.69134 4.72696 4.78977 4.86828 4.90155 4.91660 5.00609 5.00816 5.11017 5.15969 5.23201 5.25353 5.41181 5.52421 5.75596 5.92205 5.94416 6.14715 6.38074 6.41780 6.61110 7.13309 7.19465 7.57272 8.13081 8.70622 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023553 B = 0.001885 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.522058 B =14851.964621 C =15136.022432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.521 5.521 3 C 0.030 3.970 4 C -0.119 4.119 5 C -0.109 4.109 6 C 0.043 3.957 7 H 0.090 0.910 8 C 0.519 3.481 9 O -0.570 6.570 10 N -0.610 5.610 11 C 0.117 3.883 12 C -0.113 4.113 13 C 0.092 3.908 14 N -0.680 5.680 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.627 6.627 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.274 1.274 27 C -0.162 4.162 28 C 0.112 3.888 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.342 0.658 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.059 0.941 49 H 0.088 0.912 50 H 0.103 0.897 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.377 17.299 18.236 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.246 5.246 3 C -0.097 4.097 4 C -0.157 4.157 5 C -0.148 4.148 6 C -0.069 4.069 7 H 0.108 0.892 8 C 0.307 3.693 9 O -0.448 6.448 10 N -0.343 5.343 11 C -0.005 4.005 12 C -0.151 4.151 13 C -0.018 4.018 14 N -0.311 5.311 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.202 4.202 28 C -0.011 4.011 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.161 0.839 44 H 0.090 0.910 45 H 0.123 0.877 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.107 0.893 50 H 0.121 0.879 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.011 15.797 19.482 27.006 hybrid contribution -0.980 0.673 -1.666 2.047 sum 9.032 16.470 17.816 25.889 Atomic orbital electron populations 1.22470 0.87274 1.01188 1.02115 1.65033 1.08968 1.16646 1.33922 1.23248 0.95863 0.88261 1.02305 1.22314 0.96021 0.97381 1.00009 1.22303 0.92278 0.97511 1.02689 1.22738 0.99720 0.90650 0.93761 0.89210 1.20820 0.75213 0.89966 0.83260 1.90667 1.50517 1.74343 1.29250 1.48253 1.71811 1.06805 1.07465 1.21558 0.99771 0.79078 1.00138 1.21784 0.98474 1.01238 0.93652 1.21637 0.96271 0.92053 0.91839 1.60148 1.06419 1.60389 1.04155 1.21558 0.96217 1.00705 0.87969 1.20993 0.89626 0.83919 0.83162 1.90497 1.28600 1.55186 1.77045 1.41922 1.17411 1.55701 1.05943 1.19605 0.98242 1.39396 0.89187 0.90511 1.26010 0.99287 0.97482 0.98433 1.69650 1.23145 1.47337 1.15798 0.85018 0.77855 0.78612 0.77028 1.19712 1.19418 1.19912 1.22658 0.99983 0.96687 1.00864 1.21943 0.99951 0.98344 0.80851 0.93492 0.90156 0.93858 0.89455 0.92202 0.90942 0.88472 0.91935 0.87642 0.90759 0.89508 0.90324 0.93290 0.88825 0.83925 0.91002 0.87725 0.76866 0.91272 0.92266 0.89334 0.87877 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.44 127.69 1.21 1.52 16 2 N -0.52 -9.58 4.92 -887.04 -4.36 -13.94 16 3 C 0.03 0.35 6.49 86.45 0.56 0.91 16 4 C -0.12 -1.07 7.00 31.49 0.22 -0.85 16 5 C -0.11 -1.20 6.20 31.49 0.20 -1.01 16 6 C 0.04 0.68 1.69 44.32 0.07 0.76 16 7 H 0.09 1.13 6.56 -2.38 -0.02 1.11 16 8 C 0.52 11.63 6.59 87.66 0.58 12.21 16 9 O -0.57 -18.11 15.97 -3.03 -0.05 -18.16 16 10 N -0.61 -10.99 2.97 -818.86 -2.43 -13.43 16 11 C 0.12 2.28 6.43 86.36 0.56 2.84 16 12 C -0.11 -2.40 5.69 30.67 0.17 -2.23 16 13 C 0.09 1.87 2.43 44.94 0.11 1.98 16 14 N -0.68 -20.09 5.87 -495.44 -2.91 -23.00 16 15 C 0.07 2.14 5.97 85.56 0.51 2.65 16 16 C 0.44 20.20 7.82 87.66 0.69 20.88 16 17 O -0.63 -34.56 15.78 -3.05 -0.05 -34.60 16 18 N -0.57 -28.73 5.29 -306.98 -1.62 -30.35 16 19 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 20 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 22 N -0.92 -48.67 13.05 21.66 0.28 -48.39 16 23 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 C -0.16 -2.55 5.33 30.68 0.16 -2.38 16 28 C 0.11 1.32 6.19 86.37 0.53 1.85 16 29 H 0.05 1.01 7.96 -2.38 -0.02 1.00 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 0.59 7.97 -2.39 -0.02 0.57 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.54 7.90 -2.39 -0.02 0.52 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.44 8.14 -2.38 -0.02 0.43 16 36 H 0.06 0.89 7.85 -2.39 -0.02 0.87 16 37 H 0.11 0.58 7.81 -2.39 -0.02 0.56 16 38 H 0.07 1.76 7.00 -2.39 -0.02 1.74 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.09 1.69 7.80 -2.39 -0.02 1.67 16 43 H 0.34 10.97 8.18 -89.69 -0.73 10.24 16 44 H 0.07 1.89 7.41 -2.39 -0.02 1.87 16 45 H 0.10 2.96 8.05 -2.39 -0.02 2.94 16 46 H 0.40 18.72 7.90 -92.71 -0.73 17.98 16 47 H 0.28 13.81 8.31 -92.72 -0.77 13.04 16 48 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.09 1.26 7.42 -2.39 -0.02 1.24 16 50 H 0.10 0.82 5.13 -2.39 -0.01 0.81 16 51 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -75.37 400.88 -2.79 -78.16 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -0.52 Total: 38.23 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 6.85 Total: 20.93 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -11.05 Total: -129.11 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -0.10 Total: -52.76 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -75.37 -2.79 -78.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199826278.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.845 kcal (2) G-P(sol) polarization free energy of solvation -75.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds