Wall clock time and date at job start Tue Mar 31 2020 22:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46006 * 118.54155 * 2 1 4 4 C 1.52978 * 110.04323 * 161.81418 * 3 2 1 5 5 N 1.47193 * 108.73271 * 50.29422 * 4 3 2 6 6 C 1.46895 * 110.99933 * 54.36111 * 5 4 3 7 7 C 1.50700 * 109.47051 * 170.00305 * 6 5 4 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62995 * 359.72079 * 9 7 6 11 11 C 1.53626 * 108.53906 * 126.36585 * 10 9 7 12 12 C 1.53041 * 109.24183 * 54.85853 * 11 10 9 13 13 C 1.52998 * 109.46043 * 178.48489 * 12 11 10 14 14 N 1.46496 * 109.47341 * 295.06624 * 13 12 11 15 15 C 1.36941 * 120.00175 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99964 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99744 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00194 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46973 * 90.00539 * 19 17 15 21 21 H 1.48492 * 109.47291 * 210.00621 * 19 17 15 22 22 H 1.48499 * 109.47252 * 330.00704 * 19 17 15 23 23 C 1.53036 * 109.53807 * 298.50777 * 12 11 10 24 24 C 1.46923 * 120.62964 * 179.97438 * 9 7 6 25 25 C 1.46904 * 110.17081 * 291.00282 * 5 4 3 26 26 C 1.33723 * 118.53158 * 179.97438 * 2 1 3 27 27 O 1.21277 * 118.62501 * 1.71425 * 26 2 1 28 28 H 1.08998 * 109.47017 * 90.00022 * 1 2 3 29 29 H 1.08993 * 109.47820 * 210.00288 * 1 2 3 30 30 H 1.09002 * 109.46523 * 330.00374 * 1 2 3 31 31 H 1.08999 * 109.37452 * 41.63761 * 3 2 1 32 32 H 1.08998 * 109.37405 * 281.98983 * 3 2 1 33 33 H 1.09000 * 109.59501 * 290.51610 * 4 3 2 34 34 H 1.09004 * 109.71671 * 170.13693 * 4 3 2 35 35 H 1.09004 * 109.47210 * 50.00527 * 6 5 4 36 36 H 1.08997 * 109.47605 * 290.00888 * 6 5 4 37 37 H 1.08998 * 109.58645 * 246.19910 * 10 9 7 38 38 H 1.09001 * 109.58579 * 6.63067 * 10 9 7 39 39 H 1.08990 * 109.63926 * 294.86483 * 11 10 9 40 40 H 1.09005 * 109.42826 * 174.72267 * 11 10 9 41 41 H 1.09009 * 109.44893 * 58.52020 * 12 11 10 42 42 H 1.09000 * 109.46928 * 55.07061 * 13 12 11 43 43 H 1.09002 * 109.46949 * 175.06508 * 13 12 11 44 44 H 0.97006 * 119.99888 * 0.02562 * 14 13 12 45 45 H 0.96998 * 119.99812 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.49825 * 301.41219 * 23 12 11 47 47 H 1.09001 * 109.52568 * 181.32976 * 23 12 11 48 48 H 1.09007 * 109.58781 * 353.37617 * 24 9 7 49 49 H 1.08998 * 109.58580 * 113.65434 * 24 9 7 50 50 H 1.09000 * 109.38705 * 170.45296 * 25 5 4 51 51 H 1.09003 * 109.38506 * 290.14364 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2826 0.0000 4 6 3.6125 1.0909 0.4485 5 7 4.2096 -0.0018 -0.3365 6 6 4.0681 0.2469 -1.7773 7 6 4.8957 -0.7529 -2.5432 8 8 5.5395 -1.5904 -1.9475 9 7 4.9203 -0.7162 -3.8904 10 6 4.1409 0.2886 -4.6263 11 6 5.0846 1.0354 -5.5812 12 6 5.8046 0.0218 -6.4736 13 6 6.7177 0.7627 -7.4525 14 7 5.9037 1.5727 -8.3621 15 6 6.5070 2.3290 -9.3313 16 1 7.5830 2.3286 -9.4248 17 6 5.7356 3.0969 -10.1929 18 7 6.3155 3.8241 -11.1241 19 14 3.8747 3.0980 -10.0307 20 1 3.4599 4.1761 -9.0974 21 1 3.2619 3.3334 -11.3626 22 1 3.4230 1.7855 -9.5029 23 6 6.6438 -0.9189 -5.6059 24 6 5.7227 -1.6839 -4.6509 25 6 3.6017 -1.2856 0.0382 26 6 2.1037 -1.1748 0.0005 27 8 1.4464 -2.1935 -0.0309 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8901 0.5138 31 1 1.6603 1.9675 0.6832 32 1 2.1477 1.7023 -1.0058 33 1 3.6367 0.8354 1.5079 34 1 4.1739 2.0101 0.2812 35 1 4.4119 1.2554 -2.0074 36 1 3.0209 0.1462 -2.0624 37 1 3.3545 -0.2052 -5.1971 38 1 3.6973 0.9937 -3.9233 39 1 5.8184 1.5986 -5.0049 40 1 4.5056 1.7195 -6.2016 41 1 5.0689 -0.5580 -7.0312 42 1 7.3960 1.4106 -6.8972 43 1 7.2958 0.0399 -8.0282 44 1 4.9374 1.5739 -8.2774 45 1 5.7765 4.3604 -11.7263 46 1 7.3630 -0.3372 -5.0293 47 1 7.1750 -1.6257 -6.2433 48 1 6.3231 -2.2807 -3.9642 49 1 5.0629 -2.3372 -5.2218 50 1 3.9252 -2.0568 -0.6608 51 1 3.9192 -1.5560 1.0454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205562574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:28 Heat of formation + Delta-G solvation = -31.945465 kcal Electronic energy + Delta-G solvation = -30595.318729 eV Core-core repulsion = 26530.575440 eV Total energy + Delta-G solvation = -4064.743288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.44292 -40.15668 -38.17354 -37.37873 -35.44512 -35.11245 -33.00579 -31.54301 -30.72590 -30.49171 -29.59197 -27.65942 -26.70695 -25.18773 -23.82113 -23.44837 -22.83990 -21.55322 -20.53087 -19.55446 -18.61194 -17.95358 -17.51180 -17.23162 -16.87024 -16.55861 -15.98485 -15.81409 -15.25867 -15.05139 -14.72333 -14.47064 -14.32550 -14.13909 -13.86578 -13.69762 -13.48791 -13.39354 -13.23078 -13.05503 -12.97231 -12.59360 -12.55194 -12.44805 -12.13632 -11.98627 -11.85708 -11.80450 -11.43175 -11.28304 -10.95942 -10.80836 -10.60954 -10.48225 -10.28787 -10.14117 -9.88937 -9.61706 -9.28192 -8.93431 -8.81246 -8.72913 -7.26253 -5.80090 -3.15536 2.16157 2.36306 2.44406 2.68155 3.31719 3.33094 3.38220 3.40651 3.93046 4.16302 4.28840 4.32794 4.54658 4.57863 4.64601 4.71652 4.81755 4.83067 4.88413 4.89242 4.94085 5.02364 5.06897 5.07959 5.20733 5.23018 5.28148 5.36109 5.41588 5.42995 5.52514 5.65884 5.68356 5.79266 5.80433 5.85938 6.01741 6.07087 6.15144 6.23796 6.29868 6.31008 6.44755 6.66018 6.76451 6.88147 7.22276 7.66684 7.96657 7.99911 8.39062 9.18102 9.90246 10.10170 11.38549 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.002551 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.206607 B =10974.600619 C =11937.534169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.072 3.928 4 C 0.037 3.963 5 N -0.506 5.506 6 C 0.027 3.973 7 C 0.517 3.483 8 O -0.527 6.527 9 N -0.608 5.608 10 C 0.105 3.895 11 C -0.126 4.126 12 C -0.098 4.098 13 C 0.163 3.837 14 N -0.756 5.756 15 C -0.243 4.243 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.125 4.125 24 C 0.113 3.887 25 C 0.039 3.961 26 C 0.481 3.519 27 O -0.545 6.545 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.066 0.934 50 H 0.127 0.873 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.404 -5.820 25.746 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.349 5.349 3 C -0.052 4.052 4 C -0.091 4.091 5 N -0.229 5.229 6 C -0.104 4.104 7 C 0.304 3.696 8 O -0.403 6.403 9 N -0.343 5.343 10 C -0.018 4.018 11 C -0.165 4.165 12 C -0.117 4.117 13 C 0.035 3.965 14 N -0.401 5.401 15 C -0.373 4.373 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.163 4.163 24 C -0.009 4.009 25 C -0.092 4.092 26 C 0.268 3.732 27 O -0.422 6.422 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.110 0.890 49 H 0.084 0.916 50 H 0.145 0.855 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.686 -6.736 26.012 28.239 hybrid contribution -2.355 0.478 -0.412 2.438 sum -11.041 -6.258 25.600 28.573 Atomic orbital electron populations 1.21706 0.79294 1.03234 1.02168 1.47477 1.07550 1.06088 1.73744 1.22239 0.94822 0.85386 1.02764 1.22690 0.91120 0.96164 0.99156 1.62194 1.55495 1.01916 1.03321 1.22167 0.99207 1.00476 0.88507 1.20310 0.82122 0.85241 0.81930 1.90673 1.43607 1.38142 1.67919 1.48141 1.47532 1.33409 1.05197 1.21959 0.94070 0.90464 0.95336 1.22021 0.98939 0.98072 0.97438 1.21363 0.98154 0.96234 0.95969 1.20648 0.92760 0.92824 0.90232 1.42729 1.04337 1.54861 1.38210 1.19073 0.93673 1.18076 1.06487 0.89260 1.24682 0.97313 0.99331 0.97941 1.69701 1.34298 1.32800 1.21469 0.86554 0.87367 0.77498 0.77147 1.21084 1.21719 1.20380 1.21886 0.97947 0.98906 0.97597 1.21625 0.93981 0.90907 0.94358 1.22642 0.86199 0.94152 1.06170 1.21518 0.92632 0.82991 0.76010 1.90724 1.67556 1.34448 1.49431 0.92596 0.90312 0.91124 0.89649 0.91126 0.88951 0.87690 0.86943 0.91548 0.91100 0.90284 0.91137 0.90072 0.91045 0.95500 0.95481 0.80745 0.93056 0.91291 0.90393 0.88993 0.91556 0.85488 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.30 59.85 0.62 1.15 16 2 N -0.61 -4.77 3.04 -182.49 -0.55 -5.32 16 3 C 0.07 0.33 5.69 -4.32 -0.02 0.31 16 4 C 0.04 0.18 6.03 -3.67 -0.02 0.16 16 5 N -0.51 -4.18 4.75 -237.55 -1.13 -5.31 16 6 C 0.03 0.23 2.85 -4.98 -0.01 0.21 16 7 C 0.52 5.99 7.30 -10.98 -0.08 5.91 16 8 O -0.53 -7.71 13.93 5.56 0.08 -7.63 16 9 N -0.61 -6.66 2.97 -172.53 -0.51 -7.17 16 10 C 0.10 1.01 6.37 -3.48 -0.02 0.99 16 11 C -0.13 -1.55 5.26 -26.38 -0.14 -1.69 16 12 C -0.10 -1.34 2.19 -90.58 -0.20 -1.54 16 13 C 0.16 2.96 5.65 -4.04 -0.02 2.94 16 14 N -0.76 -17.19 5.12 -59.91 -0.31 -17.49 16 15 C -0.24 -6.76 10.47 -15.06 -0.16 -6.92 16 16 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 19 Si 0.88 21.42 27.73 -169.99 -4.71 16.71 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.26 6.52 56.52 0.37 -5.90 16 23 C -0.12 -1.45 5.36 -26.63 -0.14 -1.59 16 24 C 0.11 1.26 6.43 -3.73 -0.02 1.24 16 25 C 0.04 0.38 5.49 -5.19 -0.03 0.35 16 26 C 0.48 5.17 6.81 -11.67 -0.08 5.09 16 27 O -0.55 -8.03 16.33 5.56 0.09 -7.94 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.66 7.26 -51.93 -0.38 0.28 16 30 H 0.07 0.29 7.92 -51.93 -0.41 -0.12 16 31 H 0.09 0.23 7.98 -51.93 -0.41 -0.19 16 32 H 0.07 0.29 7.10 -51.93 -0.37 -0.08 16 33 H 0.09 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.11 0.72 7.64 -51.93 -0.40 0.33 16 36 H 0.07 0.53 6.02 -51.93 -0.31 0.22 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.10 7.15 -51.93 -0.37 0.73 16 41 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.36 7.87 4.71 -40.82 -0.19 7.67 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.13 1.55 5.88 -51.93 -0.31 1.25 16 51 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -36.06 388.87 -9.33 -45.39 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.48 Total: 4.61 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.44 Total: 6.59 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -1.73 Total: -63.57 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.17 Total: -15.57 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.06 -9.33 -45.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205562574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.441 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds