Wall clock time and date at job start Tue Mar 31 2020 22:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46006 * 118.54155 * 2 1 4 4 C 1.52978 * 110.04323 * 161.81418 * 3 2 1 5 5 N 1.47193 * 108.73271 * 50.29422 * 4 3 2 6 6 C 1.46895 * 110.99933 * 54.36111 * 5 4 3 7 7 C 1.50700 * 109.47051 * 170.00305 * 6 5 4 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62995 * 359.72079 * 9 7 6 11 11 C 1.53626 * 108.53906 * 126.36585 * 10 9 7 12 12 C 1.53041 * 109.24183 * 54.85853 * 11 10 9 13 13 C 1.52998 * 109.46043 * 178.48489 * 12 11 10 14 14 N 1.46496 * 109.47341 * 295.06624 * 13 12 11 15 15 C 1.36941 * 120.00175 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99964 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99744 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00194 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46973 * 90.00539 * 19 17 15 21 21 H 1.48492 * 109.47291 * 210.00621 * 19 17 15 22 22 H 1.48499 * 109.47252 * 330.00704 * 19 17 15 23 23 C 1.53036 * 109.53807 * 298.50777 * 12 11 10 24 24 C 1.46923 * 120.62964 * 179.97438 * 9 7 6 25 25 C 1.46904 * 110.17081 * 291.00282 * 5 4 3 26 26 C 1.33723 * 118.53158 * 179.97438 * 2 1 3 27 27 O 1.21277 * 118.62501 * 1.71425 * 26 2 1 28 28 H 1.08998 * 109.47017 * 90.00022 * 1 2 3 29 29 H 1.08993 * 109.47820 * 210.00288 * 1 2 3 30 30 H 1.09002 * 109.46523 * 330.00374 * 1 2 3 31 31 H 1.08999 * 109.37452 * 41.63761 * 3 2 1 32 32 H 1.08998 * 109.37405 * 281.98983 * 3 2 1 33 33 H 1.09000 * 109.59501 * 290.51610 * 4 3 2 34 34 H 1.09004 * 109.71671 * 170.13693 * 4 3 2 35 35 H 1.09004 * 109.47210 * 50.00527 * 6 5 4 36 36 H 1.08997 * 109.47605 * 290.00888 * 6 5 4 37 37 H 1.08998 * 109.58645 * 246.19910 * 10 9 7 38 38 H 1.09001 * 109.58579 * 6.63067 * 10 9 7 39 39 H 1.08990 * 109.63926 * 294.86483 * 11 10 9 40 40 H 1.09005 * 109.42826 * 174.72267 * 11 10 9 41 41 H 1.09009 * 109.44893 * 58.52020 * 12 11 10 42 42 H 1.09000 * 109.46928 * 55.07061 * 13 12 11 43 43 H 1.09002 * 109.46949 * 175.06508 * 13 12 11 44 44 H 0.97006 * 119.99888 * 0.02562 * 14 13 12 45 45 H 0.96998 * 119.99812 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.49825 * 301.41219 * 23 12 11 47 47 H 1.09001 * 109.52568 * 181.32976 * 23 12 11 48 48 H 1.09007 * 109.58781 * 353.37617 * 24 9 7 49 49 H 1.08998 * 109.58580 * 113.65434 * 24 9 7 50 50 H 1.09000 * 109.38705 * 170.45296 * 25 5 4 51 51 H 1.09003 * 109.38506 * 290.14364 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2826 0.0000 4 6 3.6125 1.0909 0.4485 5 7 4.2096 -0.0018 -0.3365 6 6 4.0681 0.2469 -1.7773 7 6 4.8957 -0.7529 -2.5432 8 8 5.5395 -1.5904 -1.9475 9 7 4.9203 -0.7162 -3.8904 10 6 4.1409 0.2886 -4.6263 11 6 5.0846 1.0354 -5.5812 12 6 5.8046 0.0218 -6.4736 13 6 6.7177 0.7627 -7.4525 14 7 5.9037 1.5727 -8.3621 15 6 6.5070 2.3290 -9.3313 16 1 7.5830 2.3286 -9.4248 17 6 5.7356 3.0969 -10.1929 18 7 6.3155 3.8241 -11.1241 19 14 3.8747 3.0980 -10.0307 20 1 3.4599 4.1761 -9.0974 21 1 3.2619 3.3334 -11.3626 22 1 3.4230 1.7855 -9.5029 23 6 6.6438 -0.9189 -5.6059 24 6 5.7227 -1.6839 -4.6509 25 6 3.6017 -1.2856 0.0382 26 6 2.1037 -1.1748 0.0005 27 8 1.4464 -2.1935 -0.0309 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8901 0.5138 31 1 1.6603 1.9675 0.6832 32 1 2.1477 1.7023 -1.0058 33 1 3.6367 0.8354 1.5079 34 1 4.1739 2.0101 0.2812 35 1 4.4119 1.2554 -2.0074 36 1 3.0209 0.1462 -2.0624 37 1 3.3545 -0.2052 -5.1971 38 1 3.6973 0.9937 -3.9233 39 1 5.8184 1.5986 -5.0049 40 1 4.5056 1.7195 -6.2016 41 1 5.0689 -0.5580 -7.0312 42 1 7.3960 1.4106 -6.8972 43 1 7.2958 0.0399 -8.0282 44 1 4.9374 1.5739 -8.2774 45 1 5.7765 4.3604 -11.7263 46 1 7.3630 -0.3372 -5.0293 47 1 7.1750 -1.6257 -6.2433 48 1 6.3231 -2.2807 -3.9642 49 1 5.0629 -2.3372 -5.2218 50 1 3.9252 -2.0568 -0.6608 51 1 3.9192 -1.5560 1.0454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205562574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:27 Heat of formation + Delta-G solvation = -59.503637 kcal Electronic energy + Delta-G solvation = -30596.513741 eV Core-core repulsion = 26530.575440 eV Total energy + Delta-G solvation = -4065.938300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.13118 -41.02000 -39.13349 -38.21163 -36.68406 -36.01724 -34.52136 -32.93020 -32.08406 -31.01986 -30.36216 -28.59938 -27.73346 -25.82257 -25.17176 -24.35065 -23.71279 -22.90996 -21.63010 -20.41330 -19.67057 -19.28536 -18.53090 -17.93350 -17.54510 -17.25013 -16.79831 -16.64782 -16.47903 -15.98128 -15.92147 -15.74802 -15.44149 -15.15869 -14.86696 -14.64003 -14.51791 -14.23786 -14.06037 -14.04444 -13.89632 -13.72354 -13.52172 -13.26027 -13.08815 -13.02667 -12.78784 -12.77434 -12.58319 -12.22233 -12.17437 -12.16133 -11.86839 -11.68141 -11.62652 -11.48209 -11.38334 -10.95166 -10.77250 -9.88085 -9.66249 -9.39106 -9.27743 -8.01119 -5.34954 1.38496 1.38614 1.44032 1.51577 1.57948 1.79814 1.93626 2.50608 2.77318 3.30186 3.37525 3.43437 3.57370 3.77972 3.80767 3.87686 3.95246 4.06027 4.12436 4.15402 4.18033 4.31044 4.31722 4.36839 4.41933 4.52382 4.56323 4.56935 4.66258 4.70160 4.71877 4.79271 4.85690 4.86469 4.92337 4.95609 5.03704 5.09210 5.14981 5.26133 5.26873 5.50337 5.52832 5.62746 5.77253 5.78874 6.22697 6.24861 6.39788 6.94260 7.10021 7.15593 7.85520 8.06489 9.20748 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.002551 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.206607 B =10974.600619 C =11937.534169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.607 5.607 3 C 0.068 3.932 4 C 0.036 3.964 5 N -0.517 5.517 6 C 0.033 3.967 7 C 0.509 3.491 8 O -0.565 6.565 9 N -0.610 5.610 10 C 0.110 3.890 11 C -0.124 4.124 12 C -0.089 4.089 13 C 0.160 3.840 14 N -0.754 5.754 15 C -0.236 4.236 16 H 0.051 0.949 17 C -0.068 4.068 18 N -0.987 5.987 19 Si 0.959 3.041 20 H -0.271 1.271 21 H -0.299 1.299 22 H -0.248 1.248 23 C -0.115 4.115 24 C 0.116 3.884 25 C 0.047 3.953 26 C 0.478 3.522 27 O -0.598 6.598 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.019 0.981 44 H 0.368 0.632 45 H 0.258 0.742 46 H 0.062 0.938 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.098 0.902 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 -4.602 27.636 30.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.340 5.340 3 C -0.055 4.055 4 C -0.091 4.091 5 N -0.240 5.240 6 C -0.097 4.097 7 C 0.298 3.702 8 O -0.444 6.444 9 N -0.343 5.343 10 C -0.013 4.013 11 C -0.162 4.162 12 C -0.107 4.107 13 C 0.034 3.966 14 N -0.400 5.400 15 C -0.367 4.367 16 H 0.069 0.931 17 C -0.259 4.259 18 N -0.638 5.638 19 Si 0.785 3.215 20 H -0.197 1.197 21 H -0.226 1.226 22 H -0.172 1.172 23 C -0.153 4.153 24 C -0.007 4.007 25 C -0.084 4.084 26 C 0.266 3.734 27 O -0.479 6.479 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.202 0.798 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.116 0.884 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.054 -5.492 27.945 30.550 hybrid contribution -1.468 0.123 -0.994 1.777 sum -12.523 -5.369 26.951 30.200 Atomic orbital electron populations 1.21805 0.78715 1.03758 1.02370 1.47604 1.08156 1.06411 1.71835 1.22519 0.94472 0.84018 1.04463 1.22862 0.91480 0.95808 0.98916 1.62209 1.55971 1.02135 1.03690 1.22197 0.98825 1.00516 0.88203 1.20977 0.81893 0.85323 0.82041 1.90661 1.45320 1.39745 1.68630 1.48241 1.47386 1.33416 1.05305 1.22027 0.93254 0.90511 0.95464 1.21970 0.99147 0.97626 0.97477 1.21254 0.97574 0.96466 0.95450 1.20794 0.93283 0.92271 0.90283 1.42676 1.05014 1.54641 1.37712 1.19033 0.92274 1.18128 1.07311 0.93121 1.25592 1.03266 0.99291 0.97737 1.69906 1.36542 1.34354 1.22962 0.85359 0.80023 0.79183 0.76944 1.19654 1.22644 1.17200 1.21780 0.97667 0.98551 0.97344 1.21544 0.94063 0.91035 0.94021 1.22428 0.85740 0.94573 1.05653 1.21689 0.92870 0.83253 0.75597 1.90695 1.68496 1.36435 1.52236 0.92554 0.92573 0.87796 0.86770 0.89645 0.88470 0.85202 0.84205 0.90836 0.90226 0.87223 0.91365 0.90905 0.90725 0.96146 0.96329 0.79816 0.93357 0.91881 0.89837 0.90021 0.90635 0.88410 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.30 127.77 1.32 2.17 16 2 N -0.61 -7.93 3.04 -850.24 -2.58 -10.51 16 3 C 0.07 0.32 5.69 86.47 0.49 0.81 16 4 C 0.04 0.21 6.03 86.24 0.52 0.73 16 5 N -0.52 -7.31 4.75 -905.47 -4.30 -11.62 16 6 C 0.03 0.45 2.85 85.56 0.24 0.69 16 7 C 0.51 10.93 7.30 87.66 0.64 11.57 16 8 O -0.56 -16.40 13.93 -3.03 -0.04 -16.44 16 9 N -0.61 -11.98 2.97 -818.13 -2.43 -14.40 16 10 C 0.11 1.72 6.37 86.51 0.55 2.28 16 11 C -0.12 -2.67 5.26 30.82 0.16 -2.51 16 12 C -0.09 -2.25 2.19 -10.77 -0.02 -2.27 16 13 C 0.16 5.72 5.65 86.38 0.49 6.20 16 14 N -0.75 -33.53 5.12 -343.46 -1.76 -35.29 16 15 C -0.24 -13.30 10.47 84.03 0.88 -12.42 16 16 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 17 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 18 N -0.99 -62.79 13.97 21.65 0.30 -62.48 16 19 Si 0.96 43.42 27.73 68.60 1.90 45.33 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.25 -9.88 6.52 99.48 0.65 -9.23 16 23 C -0.11 -2.51 5.36 30.66 0.16 -2.35 16 24 C 0.12 2.42 6.43 86.35 0.55 2.97 16 25 C 0.05 0.90 5.49 85.42 0.47 1.36 16 26 C 0.48 9.95 6.81 87.68 0.60 10.55 16 27 O -0.60 -18.10 16.33 -3.02 -0.05 -18.15 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.91 7.26 -2.39 -0.02 0.89 16 30 H 0.10 0.46 7.92 -2.39 -0.02 0.45 16 31 H 0.11 -0.02 7.98 -2.39 -0.02 -0.04 16 32 H 0.09 0.24 7.10 -2.39 -0.02 0.22 16 33 H 0.10 0.51 8.08 -2.39 -0.02 0.49 16 34 H 0.13 0.18 8.14 -2.38 -0.02 0.16 16 35 H 0.14 1.12 7.64 -2.38 -0.02 1.10 16 36 H 0.07 0.91 6.02 -2.39 -0.01 0.90 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 1.08 5.93 -2.39 -0.01 1.06 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.73 7.15 -2.38 -0.02 1.72 16 41 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.37 15.13 4.71 -92.70 -0.44 14.69 16 45 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.08 1.91 7.01 -2.38 -0.02 1.89 16 49 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 50 H 0.10 2.48 5.88 -2.39 -0.01 2.46 16 51 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -82.52 388.87 -1.00 -83.52 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.43 Total: 23.71 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 7.52 Total: 16.33 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -10.77 Total: -134.30 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.09 Total: -34.59 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.90 Total: 45.33 kcal Total: -82.52 -1.00 -83.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205562574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.016 kcal (2) G-P(sol) polarization free energy of solvation -82.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds