Wall clock time and date at job start Tue Mar 31 2020 22:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48535 * 111.00279 * 2 1 4 4 C 1.54935 * 103.22617 * 200.27973 * 3 2 1 5 5 C 1.54597 * 102.92403 * 37.41164 * 4 3 2 6 6 H 1.08995 * 110.39356 * 97.00354 * 5 4 3 7 7 C 1.50697 * 110.30916 * 219.12660 * 5 4 3 8 8 O 1.21287 * 119.99907 * 357.16800 * 7 5 4 9 9 N 1.34777 * 120.00297 * 177.17019 * 7 5 4 10 10 C 1.46924 * 120.62627 * 359.97438 * 9 7 5 11 11 C 1.53193 * 108.77613 * 126.41681 * 10 9 7 12 12 C 1.53040 * 109.31331 * 54.63100 * 11 10 9 13 13 C 1.53041 * 109.54117 * 298.64060 * 12 11 10 14 14 H 1.09002 * 109.49291 * 301.38036 * 13 12 11 15 15 N 1.46901 * 109.50170 * 181.31496 * 13 12 11 16 16 C 1.46898 * 110.99614 * 84.99582 * 15 13 12 17 17 C 1.50706 * 109.46984 * 180.02562 * 16 15 13 18 18 O 1.21295 * 119.99863 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99509 * 359.71860 * 20 19 17 22 22 C 1.38950 * 120.00048 * 179.72298 * 20 19 17 23 23 N 1.31413 * 119.99930 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47025 * 59.99851 * 24 22 20 26 26 H 1.48498 * 109.46692 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46740 * 299.99493 * 24 22 20 28 28 C 1.46921 * 120.63298 * 180.02562 * 9 7 5 29 29 C 1.47903 * 110.99975 * 242.60103 * 2 1 3 30 30 H 1.08995 * 109.47644 * 177.39612 * 1 2 3 31 31 H 1.09001 * 109.47351 * 297.40136 * 1 2 3 32 32 H 1.09004 * 109.47320 * 57.39626 * 1 2 3 33 33 H 1.08998 * 110.66383 * 318.71146 * 3 2 1 34 34 H 1.08996 * 110.67112 * 81.67694 * 3 2 1 35 35 H 1.09004 * 110.72456 * 279.05151 * 4 3 2 36 36 H 1.08998 * 110.72443 * 155.77005 * 4 3 2 37 37 H 1.08998 * 109.58957 * 6.62537 * 10 9 7 38 38 H 1.09006 * 109.70538 * 246.26811 * 10 9 7 39 39 H 1.09001 * 109.49433 * 294.68259 * 11 10 9 40 40 H 1.08998 * 109.50231 * 174.58935 * 11 10 9 41 41 H 1.09000 * 109.46135 * 178.61836 * 12 11 10 42 42 H 1.09002 * 109.44562 * 58.65173 * 12 11 10 43 43 H 1.00890 * 111.00276 * 208.95390 * 15 13 12 44 44 H 1.09004 * 109.47320 * 60.00702 * 16 15 13 45 45 H 1.09001 * 109.47291 * 299.99999 * 16 15 13 46 46 H 0.96996 * 119.99858 * 359.72084 * 19 17 16 47 47 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.58688 * 113.79900 * 28 9 7 49 49 H 1.09000 * 109.58904 * 353.36996 * 28 9 7 50 50 H 1.08992 * 109.91589 * 26.49255 * 29 2 1 51 51 H 1.09000 * 110.08059 * 265.28619 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2105 -0.5228 5 6 3.2982 0.1052 -1.5930 6 1 3.2143 0.5469 -2.5860 7 6 4.4716 -0.8389 -1.5390 8 8 5.3807 -0.6325 -0.7631 9 7 4.5109 -1.9124 -2.3529 10 6 3.4170 -2.1759 -3.2977 11 6 4.0064 -2.3346 -4.7027 12 6 5.0896 -3.4155 -4.6780 13 6 6.2126 -2.9931 -3.7279 14 1 6.6293 -2.0414 -4.0576 15 7 7.2666 -4.0164 -3.7288 16 6 8.2080 -3.8014 -4.8357 17 6 9.2720 -4.8682 -4.8047 18 8 9.2486 -5.7232 -3.9447 19 7 10.2502 -4.8716 -5.7318 20 6 11.2178 -5.8425 -5.7038 21 1 11.1988 -6.6018 -4.9361 22 6 12.2230 -5.8494 -6.6631 23 7 12.2459 -4.9256 -7.5975 24 14 13.5418 -7.1718 -6.6245 25 1 12.9075 -8.5076 -6.7599 26 1 14.4897 -6.9583 -7.7475 27 1 14.2763 -7.1008 -5.3358 28 6 5.6478 -2.8421 -2.3114 29 6 1.9990 -0.6354 -1.2259 30 1 -0.3634 -1.0265 -0.0467 31 1 -0.3634 0.4730 0.9124 32 1 -0.3634 0.5537 -0.8657 33 1 1.4238 2.0204 -0.6730 34 1 2.0014 1.7988 1.0090 35 1 4.1115 0.8835 0.2788 36 1 3.8123 2.1350 -0.9716 37 1 2.7163 -1.3409 -3.2875 38 1 2.8983 -3.0915 -3.0135 39 1 4.4435 -1.3888 -5.0228 40 1 3.2183 -2.6252 -5.3973 41 1 5.4937 -3.5477 -5.6817 42 1 4.6570 -4.3550 -4.3340 43 1 7.7490 -4.0394 -2.8430 44 1 8.6730 -2.8209 -4.7320 45 1 7.6719 -3.8509 -5.7835 46 1 10.2670 -4.1898 -6.4215 47 1 12.9478 -4.9302 -8.2670 48 1 5.3129 -3.8129 -1.9459 49 1 6.4192 -2.4468 -1.6506 50 1 1.2758 -0.5403 -2.0358 51 1 2.2116 -1.6882 -1.0398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211065514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:51 Heat of formation + Delta-G solvation = -59.779177 kcal Electronic energy + Delta-G solvation = -29671.440731 eV Core-core repulsion = 25605.490483 eV Total energy + Delta-G solvation = -4065.950249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.95729 -39.02486 -38.24504 -37.51937 -35.18272 -33.85595 -32.77396 -32.40162 -31.24215 -30.50580 -29.14571 -26.51174 -26.33867 -25.47379 -24.02418 -22.80274 -22.13539 -21.65200 -20.27819 -19.38672 -19.05924 -17.87916 -17.49418 -16.63011 -16.54079 -16.12594 -15.55305 -15.32202 -15.06731 -14.81025 -14.74251 -14.48672 -14.27461 -14.02587 -13.82026 -13.66253 -13.50087 -13.34200 -13.12015 -12.70073 -12.61033 -12.30793 -12.19765 -12.02406 -11.92958 -11.82430 -11.58610 -11.52396 -11.43003 -11.23999 -11.06833 -11.03958 -10.85997 -10.75086 -10.43267 -10.20417 -9.96427 -9.48955 -8.93322 -8.88061 -8.45372 -8.09651 -7.95119 -6.40609 -3.81466 2.38038 2.65431 3.21301 3.26735 3.31396 3.51325 3.91713 4.00093 4.04416 4.09856 4.27134 4.33612 4.53566 4.67385 4.72627 4.76802 4.81220 4.83002 4.89294 4.93448 5.02956 5.06334 5.10462 5.19477 5.24171 5.26410 5.34340 5.40174 5.41494 5.46315 5.52414 5.53735 5.65551 5.72007 5.79311 5.86966 5.88655 5.96496 6.04232 6.16554 6.24612 6.32503 6.34934 6.50261 7.12548 7.21460 7.56127 7.62591 7.94125 8.07123 8.62252 9.18801 9.55175 10.06704 10.77055 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031808 B = 0.001823 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.079769 B =15353.408055 C =15599.344201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.034 3.966 4 C -0.110 4.110 5 C -0.121 4.121 6 H 0.102 0.898 7 C 0.526 3.474 8 O -0.534 6.534 9 N -0.608 5.608 10 C 0.104 3.896 11 C -0.135 4.135 12 C -0.110 4.110 13 C 0.075 3.925 14 H 0.045 0.955 15 N -0.661 5.661 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.111 3.889 29 C 0.045 3.955 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.352 0.648 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.055 0.945 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.456 14.271 7.552 30.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.094 4.094 4 C -0.148 4.148 5 C -0.143 4.143 6 H 0.120 0.880 7 C 0.313 3.687 8 O -0.410 6.410 9 N -0.341 5.341 10 C -0.019 4.019 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.036 4.036 14 H 0.063 0.937 15 N -0.294 5.294 16 C -0.080 4.080 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.012 4.012 29 C -0.083 4.083 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.172 0.828 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.073 0.927 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.053 13.076 8.523 29.517 hybrid contribution 0.837 0.954 -1.203 1.749 sum -24.215 14.030 7.320 28.927 Atomic orbital electron populations 1.22536 0.87486 1.02242 1.01078 1.64743 1.08300 1.15263 1.36234 1.23303 0.94900 0.89613 1.01592 1.22484 0.96886 0.97088 0.98361 1.22187 0.93769 0.96422 1.01875 0.87986 1.20364 0.87588 0.80907 0.79809 1.90702 1.38648 1.73350 1.38306 1.48012 1.21858 1.25813 1.38456 1.21893 0.88941 1.02051 0.89013 1.21954 0.99249 1.00205 0.96011 1.21553 0.94795 0.98353 1.00112 1.21841 0.93140 0.93607 0.94979 0.93702 1.60092 1.14601 1.47347 1.07382 1.21711 0.93556 0.97017 0.95742 1.19788 0.84257 0.88270 0.85055 1.90526 1.76824 1.40476 1.38831 1.41853 1.23395 1.27923 1.26844 1.19663 1.03199 1.07202 1.12869 0.87951 1.25264 0.98902 0.98229 0.95548 1.69606 1.34875 1.34070 1.15809 0.85908 0.79919 0.80594 0.77743 1.19887 1.20992 1.19910 1.21754 0.89065 0.93371 0.97007 1.22962 0.93920 0.99840 0.91577 0.91140 0.91027 0.95286 0.93557 0.89517 0.88538 0.90433 0.89858 0.90838 0.91584 0.90309 0.91307 0.90781 0.82832 0.93849 0.89630 0.77480 0.91839 0.90213 0.88964 0.92704 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.40 60.06 0.56 0.65 16 2 N -0.52 -4.02 5.55 -238.73 -1.33 -5.34 16 3 C 0.03 0.23 6.56 -1.90 -0.01 0.21 16 4 C -0.11 -0.90 6.39 -24.87 -0.16 -1.06 16 5 C -0.12 -0.96 2.48 -90.42 -0.22 -1.18 16 6 H 0.10 0.62 7.74 -51.93 -0.40 0.22 16 7 C 0.53 5.99 6.90 -10.99 -0.08 5.92 16 8 O -0.53 -8.25 14.86 5.55 0.08 -8.17 16 9 N -0.61 -6.15 2.93 -172.74 -0.51 -6.66 16 10 C 0.10 0.72 5.26 -3.71 -0.02 0.70 16 11 C -0.14 -1.01 6.08 -26.61 -0.16 -1.18 16 12 C -0.11 -1.16 5.40 -26.69 -0.14 -1.31 16 13 C 0.08 0.94 2.64 -67.57 -0.18 0.77 16 14 H 0.05 0.59 7.80 -51.93 -0.41 0.19 16 15 N -0.66 -10.68 5.93 -107.83 -0.64 -11.32 16 16 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 17 C 0.44 10.52 7.82 -10.98 -0.09 10.43 16 18 O -0.58 -15.97 15.78 5.54 0.09 -15.88 16 19 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.11 1.33 5.70 -3.69 -0.02 1.31 16 29 C 0.05 0.31 4.71 -2.75 -0.01 0.30 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.03 0.14 8.00 -51.93 -0.42 -0.28 16 33 H 0.05 0.26 7.96 -51.93 -0.41 -0.16 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.04 6.91 -51.93 -0.36 0.68 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.42 4.81 -51.93 -0.25 0.17 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.78 7.43 -51.93 -0.39 0.40 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.35 5.97 8.06 -39.30 -0.32 5.66 16 44 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 45 H 0.09 1.40 7.42 -51.93 -0.39 1.02 16 46 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.09 1.27 7.01 -51.93 -0.36 0.91 16 50 H 0.05 0.28 7.33 -51.93 -0.38 -0.10 16 51 H 0.09 0.68 7.00 -51.93 -0.36 0.31 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -33.67 396.93 -9.98 -43.65 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -8.50 Total: 11.60 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -0.80 Total: 8.38 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -1.81 Total: -61.78 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: 0.17 Total: -24.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.67 -9.98 -43.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211065514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.131 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds