Wall clock time and date at job start Tue Mar 31 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48535 * 111.00279 * 2 1 4 4 C 1.54935 * 103.22617 * 200.27973 * 3 2 1 5 5 C 1.54597 * 102.92403 * 37.41164 * 4 3 2 6 6 H 1.08995 * 110.39356 * 97.00354 * 5 4 3 7 7 C 1.50697 * 110.30916 * 219.12660 * 5 4 3 8 8 O 1.21287 * 119.99907 * 357.16800 * 7 5 4 9 9 N 1.34777 * 120.00297 * 177.17019 * 7 5 4 10 10 C 1.46924 * 120.62627 * 359.97438 * 9 7 5 11 11 C 1.53193 * 108.77613 * 126.41681 * 10 9 7 12 12 C 1.53040 * 109.31331 * 54.63100 * 11 10 9 13 13 C 1.53041 * 109.54117 * 298.64060 * 12 11 10 14 14 H 1.09002 * 109.49291 * 301.38036 * 13 12 11 15 15 N 1.46901 * 109.50170 * 181.31496 * 13 12 11 16 16 C 1.46898 * 110.99614 * 84.99582 * 15 13 12 17 17 C 1.50706 * 109.46984 * 180.02562 * 16 15 13 18 18 O 1.21295 * 119.99863 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99509 * 359.71860 * 20 19 17 22 22 C 1.38950 * 120.00048 * 179.72298 * 20 19 17 23 23 N 1.31413 * 119.99930 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47025 * 59.99851 * 24 22 20 26 26 H 1.48498 * 109.46692 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46740 * 299.99493 * 24 22 20 28 28 C 1.46921 * 120.63298 * 180.02562 * 9 7 5 29 29 C 1.47903 * 110.99975 * 242.60103 * 2 1 3 30 30 H 1.08995 * 109.47644 * 177.39612 * 1 2 3 31 31 H 1.09001 * 109.47351 * 297.40136 * 1 2 3 32 32 H 1.09004 * 109.47320 * 57.39626 * 1 2 3 33 33 H 1.08998 * 110.66383 * 318.71146 * 3 2 1 34 34 H 1.08996 * 110.67112 * 81.67694 * 3 2 1 35 35 H 1.09004 * 110.72456 * 279.05151 * 4 3 2 36 36 H 1.08998 * 110.72443 * 155.77005 * 4 3 2 37 37 H 1.08998 * 109.58957 * 6.62537 * 10 9 7 38 38 H 1.09006 * 109.70538 * 246.26811 * 10 9 7 39 39 H 1.09001 * 109.49433 * 294.68259 * 11 10 9 40 40 H 1.08998 * 109.50231 * 174.58935 * 11 10 9 41 41 H 1.09000 * 109.46135 * 178.61836 * 12 11 10 42 42 H 1.09002 * 109.44562 * 58.65173 * 12 11 10 43 43 H 1.00890 * 111.00276 * 208.95390 * 15 13 12 44 44 H 1.09004 * 109.47320 * 60.00702 * 16 15 13 45 45 H 1.09001 * 109.47291 * 299.99999 * 16 15 13 46 46 H 0.96996 * 119.99858 * 359.72084 * 19 17 16 47 47 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.58688 * 113.79900 * 28 9 7 49 49 H 1.09000 * 109.58904 * 353.36996 * 28 9 7 50 50 H 1.08992 * 109.91589 * 26.49255 * 29 2 1 51 51 H 1.09000 * 110.08059 * 265.28619 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2105 -0.5228 5 6 3.2982 0.1052 -1.5930 6 1 3.2143 0.5469 -2.5860 7 6 4.4716 -0.8389 -1.5390 8 8 5.3807 -0.6325 -0.7631 9 7 4.5109 -1.9124 -2.3529 10 6 3.4170 -2.1759 -3.2977 11 6 4.0064 -2.3346 -4.7027 12 6 5.0896 -3.4155 -4.6780 13 6 6.2126 -2.9931 -3.7279 14 1 6.6293 -2.0414 -4.0576 15 7 7.2666 -4.0164 -3.7288 16 6 8.2080 -3.8014 -4.8357 17 6 9.2720 -4.8682 -4.8047 18 8 9.2486 -5.7232 -3.9447 19 7 10.2502 -4.8716 -5.7318 20 6 11.2178 -5.8425 -5.7038 21 1 11.1988 -6.6018 -4.9361 22 6 12.2230 -5.8494 -6.6631 23 7 12.2459 -4.9256 -7.5975 24 14 13.5418 -7.1718 -6.6245 25 1 12.9075 -8.5076 -6.7599 26 1 14.4897 -6.9583 -7.7475 27 1 14.2763 -7.1008 -5.3358 28 6 5.6478 -2.8421 -2.3114 29 6 1.9990 -0.6354 -1.2259 30 1 -0.3634 -1.0265 -0.0467 31 1 -0.3634 0.4730 0.9124 32 1 -0.3634 0.5537 -0.8657 33 1 1.4238 2.0204 -0.6730 34 1 2.0014 1.7988 1.0090 35 1 4.1115 0.8835 0.2788 36 1 3.8123 2.1350 -0.9716 37 1 2.7163 -1.3409 -3.2875 38 1 2.8983 -3.0915 -3.0135 39 1 4.4435 -1.3888 -5.0228 40 1 3.2183 -2.6252 -5.3973 41 1 5.4937 -3.5477 -5.6817 42 1 4.6570 -4.3550 -4.3340 43 1 7.7490 -4.0394 -2.8430 44 1 8.6730 -2.8209 -4.7320 45 1 7.6719 -3.8509 -5.7835 46 1 10.2670 -4.1898 -6.4215 47 1 12.9478 -4.9302 -8.2670 48 1 5.3129 -3.8129 -1.9459 49 1 6.4192 -2.4468 -1.6506 50 1 1.2758 -0.5403 -2.0358 51 1 2.2116 -1.6882 -1.0398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211065514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:50 Heat of formation + Delta-G solvation = -86.597062 kcal Electronic energy + Delta-G solvation = -29672.603642 eV Core-core repulsion = 25605.490483 eV Total energy + Delta-G solvation = -4067.113159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.74716 -40.27950 -39.50453 -38.52499 -36.43786 -35.79636 -33.50977 -33.26469 -33.15665 -31.46692 -29.90120 -27.89268 -27.11706 -26.31509 -25.65326 -23.60316 -22.91615 -22.17894 -21.19888 -21.09195 -20.02442 -19.84573 -18.26893 -17.90768 -17.37011 -17.11496 -16.86642 -16.50827 -16.29941 -15.88874 -15.83361 -15.50106 -15.30570 -15.23711 -15.05049 -14.83648 -14.38529 -14.09784 -14.04721 -13.81565 -13.59321 -13.45034 -13.33014 -13.19678 -12.90635 -12.86821 -12.56236 -12.45351 -12.43175 -12.34471 -12.13193 -12.10747 -11.90305 -11.83422 -11.69681 -11.64450 -11.51720 -10.85314 -10.37870 -10.03807 -9.75512 -9.42334 -9.38651 -8.47990 -5.97121 1.39077 1.40990 1.52000 1.53327 1.83104 2.02346 2.28596 2.89748 3.04681 3.18765 3.33264 3.42318 3.50437 3.69152 3.83503 3.91753 3.98826 4.06948 4.22616 4.24446 4.28092 4.30274 4.33975 4.42449 4.50001 4.52180 4.53069 4.55523 4.65228 4.66620 4.76829 4.78825 4.83035 4.92680 4.97981 4.98741 5.06314 5.09857 5.19926 5.22701 5.35972 5.39749 5.45979 5.85610 5.87228 6.05622 6.07101 6.28065 6.35519 6.57810 7.09198 7.10439 7.53334 8.08617 8.69115 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031808 B = 0.001823 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.079769 B =15353.408055 C =15599.344201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.549 5.549 3 C 0.040 3.960 4 C -0.113 4.113 5 C -0.114 4.114 6 H 0.131 0.869 7 C 0.518 3.482 8 O -0.586 6.586 9 N -0.604 5.604 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.081 3.919 14 H 0.042 0.958 15 N -0.672 5.672 16 C 0.069 3.931 17 C 0.437 3.563 18 O -0.622 6.622 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.116 3.884 29 C 0.049 3.951 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.343 0.657 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.085 0.915 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.789 15.281 5.966 32.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.273 5.273 3 C -0.088 4.088 4 C -0.151 4.151 5 C -0.135 4.135 6 H 0.149 0.851 7 C 0.308 3.692 8 O -0.466 6.466 9 N -0.336 5.336 10 C -0.021 4.021 11 C -0.165 4.165 12 C -0.147 4.147 13 C -0.029 4.029 14 H 0.060 0.940 15 N -0.304 5.304 16 C -0.064 4.064 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.008 4.008 29 C -0.079 4.079 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.161 0.839 44 H 0.078 0.922 45 H 0.125 0.875 46 H 0.230 0.770 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.103 0.897 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.435 14.105 6.896 31.610 hybrid contribution 1.534 0.641 -0.663 1.790 sum -25.901 14.746 6.233 30.450 Atomic orbital electron populations 1.22558 0.86142 1.02694 1.01819 1.64704 1.09742 1.15834 1.37050 1.23265 0.93891 0.89652 1.01943 1.22453 0.97386 0.97655 0.97648 1.22244 0.92559 0.95488 1.03233 0.85096 1.21093 0.87944 0.81244 0.78953 1.90682 1.40810 1.74657 1.40454 1.48112 1.21852 1.24949 1.38720 1.22187 0.88230 1.03897 0.87814 1.21932 0.98820 0.98967 0.96825 1.21561 0.94880 0.99438 0.98814 1.21889 0.92662 0.92460 0.95863 0.93994 1.60154 1.14679 1.49193 1.06415 1.21550 0.92297 0.95175 0.97368 1.20812 0.84498 0.88692 0.83525 1.90493 1.77825 1.42441 1.40132 1.41916 1.23660 1.27776 1.27528 1.19647 1.05211 1.08204 1.13527 0.90301 1.26057 1.00312 1.00163 0.94702 1.69666 1.35505 1.34908 1.15925 0.84973 0.77320 0.77863 0.78083 1.19644 1.19367 1.19793 1.21518 0.89449 0.93625 0.96170 1.22951 0.93773 0.98845 0.92340 0.90907 0.90904 0.93857 0.91505 0.89757 0.92034 0.89283 0.86976 0.89675 0.91435 0.87553 0.91913 0.91253 0.83850 0.92190 0.87534 0.76970 0.91242 0.90355 0.91503 0.89696 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.40 127.69 1.20 1.33 16 2 N -0.55 -7.38 5.55 -909.19 -5.05 -12.43 16 3 C 0.04 0.46 6.56 86.65 0.57 1.03 16 4 C -0.11 -1.75 6.39 31.80 0.20 -1.55 16 5 C -0.11 -1.57 2.48 -10.66 -0.03 -1.60 16 6 H 0.13 1.07 7.74 -2.39 -0.02 1.05 16 7 C 0.52 11.63 6.90 87.66 0.60 12.23 16 8 O -0.59 -19.04 14.86 -3.05 -0.05 -19.09 16 9 N -0.60 -11.60 2.93 -818.82 -2.40 -14.00 16 10 C 0.10 1.08 5.26 86.36 0.45 1.53 16 11 C -0.13 -1.46 6.08 30.67 0.19 -1.28 16 12 C -0.11 -2.10 5.40 30.62 0.17 -1.93 16 13 C 0.08 2.01 2.64 45.01 0.12 2.12 16 14 H 0.04 1.07 7.80 -2.39 -0.02 1.05 16 15 N -0.67 -21.93 5.93 -495.08 -2.94 -24.87 16 16 C 0.07 2.43 5.97 85.56 0.51 2.94 16 17 C 0.44 21.32 7.82 87.66 0.69 22.00 16 18 O -0.62 -35.30 15.78 -3.08 -0.05 -35.35 16 19 N -0.57 -29.89 5.29 -306.97 -1.62 -31.51 16 20 C -0.34 -19.41 9.68 84.04 0.81 -18.60 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 23 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 24 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 C 0.12 2.83 5.70 86.38 0.49 3.32 16 29 C 0.05 0.54 4.71 86.45 0.41 0.95 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.04 0.24 8.00 -2.38 -0.02 0.23 16 33 H 0.07 0.52 7.96 -2.39 -0.02 0.50 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.41 6.91 -2.38 -0.02 1.39 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.11 0.60 4.81 -2.39 -0.01 0.59 16 38 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 1.30 7.43 -2.39 -0.02 1.28 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.34 12.14 8.06 -89.70 -0.72 11.41 16 44 H 0.06 1.95 8.06 -2.39 -0.02 1.93 16 45 H 0.11 3.35 7.42 -2.39 -0.02 3.34 16 46 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 47 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 48 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 49 H 0.07 1.98 7.01 -2.39 -0.02 1.96 16 50 H 0.08 0.45 7.33 -2.39 -0.02 0.43 16 51 H 0.07 1.00 7.00 -2.39 -0.02 0.99 16 Total: -1.00 -76.14 396.93 -3.45 -79.60 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -0.51 Total: 39.62 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 6.85 Total: 22.31 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -11.73 Total: -132.51 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -0.09 Total: -54.43 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -76.14 -3.45 -79.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211065514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.001 kcal (2) G-P(sol) polarization free energy of solvation -76.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds