Wall clock time and date at job start Tue Mar 31 2020 22:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48564 * 110.99840 * 2 1 4 4 C 1.54379 * 104.59526 * 200.95761 * 3 2 1 5 5 C 1.54255 * 105.05993 * 23.85200 * 4 3 2 6 6 C 1.48552 * 111.00378 * 244.58203 * 2 1 3 7 7 H 1.08997 * 110.41324 * 40.25695 * 6 2 1 8 8 C 1.50697 * 110.41286 * 277.93716 * 6 2 1 9 9 O 1.21287 * 120.00061 * 341.44772 * 8 6 2 10 10 N 1.34776 * 120.00587 * 161.45539 * 8 6 2 11 11 C 1.46500 * 120.00323 * 180.02562 * 10 8 6 12 12 C 1.53113 * 109.51987 * 274.86728 * 11 10 8 13 13 C 1.53042 * 109.27429 * 182.50506 * 12 11 10 14 14 N 1.46845 * 109.57687 * 59.08567 * 13 12 11 15 15 C 1.46905 * 111.00143 * 174.19475 * 14 13 12 16 16 C 1.50697 * 109.47168 * 190.59920 * 15 14 13 17 17 O 1.21299 * 120.00172 * 6.26585 * 16 15 14 18 18 N 1.34776 * 119.99993 * 186.27155 * 16 15 14 19 19 C 1.37100 * 119.99821 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00044 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99924 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00315 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47515 * 89.99753 * 23 21 19 25 25 H 1.48497 * 109.47129 * 210.00246 * 23 21 19 26 26 H 1.48499 * 109.46858 * 329.99800 * 23 21 19 27 27 C 1.46847 * 111.19550 * 298.28982 * 14 13 12 28 28 C 1.53038 * 109.52254 * 61.74255 * 27 14 13 29 29 H 1.09008 * 109.46642 * 175.42062 * 1 2 3 30 30 H 1.08995 * 109.47122 * 55.42369 * 1 2 3 31 31 H 1.08995 * 109.47102 * 295.41611 * 1 2 3 32 32 H 1.08993 * 110.41430 * 319.74057 * 3 2 1 33 33 H 1.09008 * 110.40891 * 82.18045 * 3 2 1 34 34 H 1.08999 * 110.32360 * 264.95752 * 4 3 2 35 35 H 1.08998 * 110.40979 * 142.79364 * 4 3 2 36 36 H 1.08996 * 110.32500 * 241.10318 * 5 4 3 37 37 H 1.09001 * 110.32687 * 118.89548 * 5 4 3 38 38 H 0.97008 * 119.99500 * 359.97438 * 10 8 6 39 39 H 1.08995 * 109.52075 * 34.99835 * 11 10 8 40 40 H 1.08998 * 109.50899 * 302.38470 * 12 11 10 41 41 H 1.09007 * 109.50472 * 62.50200 * 12 11 10 42 42 H 1.09006 * 109.41264 * 299.06795 * 13 12 11 43 43 H 1.08999 * 109.45624 * 179.12882 * 13 12 11 44 44 H 1.09001 * 109.46942 * 310.59526 * 15 14 13 45 45 H 1.08998 * 109.47077 * 70.59350 * 15 14 13 46 46 H 0.96992 * 119.99927 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00331 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.46576 * 301.72227 * 27 14 13 49 49 H 1.09004 * 109.45755 * 181.75931 * 27 14 13 50 50 H 1.09005 * 109.50218 * 180.87474 * 28 27 14 51 51 H 1.09000 * 109.49980 * 60.75892 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4433 1.2502 -0.5344 5 6 3.4433 -0.0538 -1.3584 6 6 2.0015 -0.5952 -1.2526 7 1 1.4099 -0.2713 -2.1088 8 6 2.0078 -2.0993 -1.1585 9 8 1.9401 -2.6394 -0.0747 10 7 2.0889 -2.8443 -2.2787 11 6 2.0944 -4.3064 -2.1872 12 6 3.5228 -4.7979 -1.9371 13 6 3.5322 -6.3280 -1.9048 14 7 3.0310 -6.8502 -3.1826 15 6 3.1550 -8.3129 -3.2385 16 6 2.8804 -8.7870 -4.6423 17 8 2.7205 -7.9808 -5.5344 18 7 2.8124 -10.1069 -4.9067 19 6 2.5630 -10.5381 -6.1839 20 1 2.4208 -9.8203 -6.9782 21 6 2.4934 -11.8988 -6.4566 22 7 2.2540 -12.3123 -7.6808 23 14 2.7403 -13.1405 -5.0830 24 1 1.4307 -13.4519 -4.4559 25 1 3.3306 -14.3840 -5.6400 26 1 3.6559 -12.5726 -4.0611 27 6 1.6442 -6.4301 -3.4205 28 6 1.5787 -4.9032 -3.4996 29 1 -0.3633 -1.0245 -0.0821 30 1 -0.3633 0.5832 -0.8461 31 1 -0.3633 0.4410 0.9282 32 1 1.4099 2.0212 -0.6601 33 1 2.0078 1.7917 1.0122 34 1 4.1483 1.1749 0.2935 35 1 3.6954 2.0994 -1.1695 36 1 4.1484 -0.7691 -0.9350 37 1 3.6937 0.1555 -2.3984 38 1 2.1428 -2.4123 -3.1456 39 1 1.4513 -4.6224 -1.3659 40 1 4.1737 -4.4478 -2.7382 41 1 3.8791 -4.4107 -0.9825 42 1 2.8928 -6.6772 -1.0940 43 1 4.5504 -6.6815 -1.7424 44 1 4.1646 -8.6033 -2.9479 45 1 2.4361 -8.7648 -2.5551 46 1 2.9405 -10.7515 -4.1934 47 1 2.2057 -13.2622 -7.8712 48 1 1.0137 -6.7788 -2.6026 49 1 1.2911 -6.8579 -4.3588 50 1 0.5468 -4.5910 -3.6607 51 1 2.1982 -4.5548 -4.3260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226608889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:08 Heat of formation + Delta-G solvation = -52.793568 kcal Electronic energy + Delta-G solvation = -29693.154105 eV Core-core repulsion = 25627.506776 eV Total energy + Delta-G solvation = -4065.647330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.59308 -39.36334 -38.36540 -37.43989 -34.98430 -33.89391 -32.68116 -31.91952 -31.57827 -30.77918 -29.68463 -27.24127 -26.08462 -24.57307 -23.29257 -23.09406 -21.90693 -21.40886 -20.38420 -19.74249 -19.33519 -18.26565 -17.61624 -16.74480 -16.20920 -15.99162 -15.57236 -15.06658 -15.02159 -14.94784 -14.66125 -14.62927 -14.21317 -14.01382 -13.79689 -13.55833 -13.39158 -13.12237 -13.05335 -12.82956 -12.49513 -12.38108 -12.20373 -12.03887 -11.89494 -11.84265 -11.60501 -11.53491 -11.31805 -11.14604 -11.14139 -11.07892 -10.80484 -10.59024 -10.45356 -9.97320 -9.85548 -9.52653 -9.14248 -8.89978 -8.55335 -8.17172 -7.94840 -6.30649 -3.81887 2.46441 2.81645 3.03464 3.07386 3.15685 3.67733 3.75518 3.93080 4.10931 4.14288 4.17850 4.47332 4.62099 4.67813 4.70585 4.81329 4.90476 4.95593 4.98689 5.07218 5.09717 5.18625 5.21081 5.26778 5.33035 5.41128 5.43499 5.48034 5.54228 5.60213 5.60930 5.65380 5.69473 5.70089 5.77913 5.94230 5.95493 5.98612 6.11317 6.21559 6.27719 6.36916 6.44300 6.51288 7.17988 7.33261 7.38326 7.59663 8.11986 8.15157 8.61295 8.96024 9.43454 9.84804 10.82465 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034599 B = 0.001849 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.074423 B =15135.821144 C =15212.253620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.491 5.491 3 C 0.032 3.968 4 C -0.123 4.123 5 C -0.112 4.112 6 C 0.042 3.958 7 H 0.072 0.928 8 C 0.521 3.479 9 O -0.518 6.518 10 N -0.726 5.726 11 C 0.145 3.855 12 C -0.122 4.122 13 C 0.058 3.942 14 N -0.515 5.515 15 C 0.043 3.957 16 C 0.453 3.547 17 O -0.558 6.558 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.058 3.942 28 C -0.118 4.118 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.399 0.601 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.032 0.968 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.026 0.974 49 H 0.103 0.897 50 H 0.069 0.931 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 24.784 15.604 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.215 5.215 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.150 4.150 6 C -0.070 4.070 7 H 0.090 0.910 8 C 0.306 3.694 9 O -0.392 6.392 10 N -0.378 5.378 11 C 0.041 3.959 12 C -0.161 4.161 13 C -0.071 4.071 14 N -0.240 5.240 15 C -0.088 4.088 16 C 0.238 3.762 17 O -0.440 6.440 18 N -0.232 5.232 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.070 4.070 28 C -0.157 4.157 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.233 0.767 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.065 0.935 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.044 0.956 49 H 0.121 0.879 50 H 0.088 0.912 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.242 24.652 15.757 29.259 hybrid contribution -0.607 -0.933 0.457 1.203 sum -0.365 23.720 16.215 28.734 Atomic orbital electron populations 1.22541 0.87330 1.02418 1.01150 1.65085 1.08560 1.14781 1.33048 1.23173 0.95211 0.89553 1.01686 1.22289 0.96795 0.97115 0.99902 1.22232 0.94206 0.97590 1.01015 1.22665 0.98108 0.92776 0.93477 0.91023 1.20248 0.76312 0.88552 0.84331 1.90709 1.47650 1.73368 1.27453 1.46145 1.75535 1.07136 1.09011 1.21083 0.97290 0.78460 0.99065 1.21924 0.96789 0.95051 1.02314 1.22057 1.00389 0.94674 0.89943 1.61512 1.21509 1.09336 1.31650 1.21880 1.02088 0.88261 0.96576 1.19667 0.84056 0.82768 0.89697 1.90540 1.53262 1.53232 1.46971 1.42235 1.65125 1.05589 1.10253 1.19418 1.45567 0.93002 0.85240 0.86283 1.25034 0.97658 0.96974 0.96523 1.69620 1.48295 1.15807 1.18499 0.86679 0.78876 0.81951 0.81933 1.19685 1.20200 1.19475 1.22125 0.88122 0.94265 1.02474 1.21822 1.01301 0.95885 0.96653 0.91067 0.95306 0.90756 0.93569 0.89573 0.90545 0.90851 0.90314 0.90292 0.76737 0.89906 0.90745 0.91267 0.95002 0.90477 0.89070 0.93461 0.79742 0.91647 0.95592 0.87922 0.91226 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.44 60.06 0.57 0.68 16 2 N -0.49 -4.52 4.94 -231.72 -1.15 -5.66 16 3 C 0.03 0.21 6.49 -2.18 -0.01 0.19 16 4 C -0.12 -0.71 7.00 -25.35 -0.18 -0.89 16 5 C -0.11 -0.76 6.54 -25.35 -0.17 -0.92 16 6 C 0.04 0.35 2.67 -67.23 -0.18 0.17 16 7 H 0.07 0.47 7.97 -51.93 -0.41 0.06 16 8 C 0.52 5.76 6.67 -10.99 -0.07 5.69 16 9 O -0.52 -7.91 16.26 5.55 0.09 -7.82 16 10 N -0.73 -6.91 5.08 -53.69 -0.27 -7.18 16 11 C 0.15 1.66 2.52 -67.81 -0.17 1.49 16 12 C -0.12 -1.43 5.67 -26.65 -0.15 -1.58 16 13 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 14 N -0.52 -8.10 4.35 -236.11 -1.03 -9.13 16 15 C 0.04 0.73 5.45 -4.97 -0.03 0.70 16 16 C 0.45 10.12 7.31 -10.99 -0.08 10.04 16 17 O -0.56 -14.55 14.29 5.54 0.08 -14.47 16 18 N -0.59 -13.99 5.09 -10.96 -0.06 -14.04 16 19 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 23 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 27 C 0.06 0.88 5.12 -3.83 -0.02 0.86 16 28 C -0.12 -1.43 5.57 -26.65 -0.15 -1.58 16 29 H 0.07 0.67 7.95 -51.92 -0.41 0.26 16 30 H 0.03 0.19 7.97 -51.93 -0.41 -0.23 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.25 7.90 -51.93 -0.41 -0.16 16 33 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.64 7.86 -51.93 -0.41 0.23 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.40 2.81 8.60 -40.82 -0.35 2.46 16 39 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 44 H 0.09 1.35 7.98 -51.93 -0.41 0.94 16 45 H 0.05 0.71 8.12 -51.93 -0.42 0.28 16 46 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.10 1.90 6.06 -51.93 -0.31 1.59 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -34.54 401.03 -9.95 -44.49 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -8.81 Total: 10.12 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -0.91 Total: 7.93 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -1.73 Total: -60.91 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.17 Total: -22.30 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.54 -9.95 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226608889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.304 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds