Wall clock time and date at job start Tue Mar 31 2020 22:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48564 * 110.99840 * 2 1 4 4 C 1.54379 * 104.59526 * 200.95761 * 3 2 1 5 5 C 1.54255 * 105.05993 * 23.85200 * 4 3 2 6 6 C 1.48552 * 111.00378 * 244.58203 * 2 1 3 7 7 H 1.08997 * 110.41324 * 40.25695 * 6 2 1 8 8 C 1.50697 * 110.41286 * 277.93716 * 6 2 1 9 9 O 1.21287 * 120.00061 * 341.44772 * 8 6 2 10 10 N 1.34776 * 120.00587 * 161.45539 * 8 6 2 11 11 C 1.46500 * 120.00323 * 180.02562 * 10 8 6 12 12 C 1.53113 * 109.51987 * 274.86728 * 11 10 8 13 13 C 1.53042 * 109.27429 * 182.50506 * 12 11 10 14 14 N 1.46845 * 109.57687 * 59.08567 * 13 12 11 15 15 C 1.46905 * 111.00143 * 174.19475 * 14 13 12 16 16 C 1.50697 * 109.47168 * 190.59920 * 15 14 13 17 17 O 1.21299 * 120.00172 * 6.26585 * 16 15 14 18 18 N 1.34776 * 119.99993 * 186.27155 * 16 15 14 19 19 C 1.37100 * 119.99821 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00044 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99924 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00315 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47515 * 89.99753 * 23 21 19 25 25 H 1.48497 * 109.47129 * 210.00246 * 23 21 19 26 26 H 1.48499 * 109.46858 * 329.99800 * 23 21 19 27 27 C 1.46847 * 111.19550 * 298.28982 * 14 13 12 28 28 C 1.53038 * 109.52254 * 61.74255 * 27 14 13 29 29 H 1.09008 * 109.46642 * 175.42062 * 1 2 3 30 30 H 1.08995 * 109.47122 * 55.42369 * 1 2 3 31 31 H 1.08995 * 109.47102 * 295.41611 * 1 2 3 32 32 H 1.08993 * 110.41430 * 319.74057 * 3 2 1 33 33 H 1.09008 * 110.40891 * 82.18045 * 3 2 1 34 34 H 1.08999 * 110.32360 * 264.95752 * 4 3 2 35 35 H 1.08998 * 110.40979 * 142.79364 * 4 3 2 36 36 H 1.08996 * 110.32500 * 241.10318 * 5 4 3 37 37 H 1.09001 * 110.32687 * 118.89548 * 5 4 3 38 38 H 0.97008 * 119.99500 * 359.97438 * 10 8 6 39 39 H 1.08995 * 109.52075 * 34.99835 * 11 10 8 40 40 H 1.08998 * 109.50899 * 302.38470 * 12 11 10 41 41 H 1.09007 * 109.50472 * 62.50200 * 12 11 10 42 42 H 1.09006 * 109.41264 * 299.06795 * 13 12 11 43 43 H 1.08999 * 109.45624 * 179.12882 * 13 12 11 44 44 H 1.09001 * 109.46942 * 310.59526 * 15 14 13 45 45 H 1.08998 * 109.47077 * 70.59350 * 15 14 13 46 46 H 0.96992 * 119.99927 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00331 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.46576 * 301.72227 * 27 14 13 49 49 H 1.09004 * 109.45755 * 181.75931 * 27 14 13 50 50 H 1.09005 * 109.50218 * 180.87474 * 28 27 14 51 51 H 1.09000 * 109.49980 * 60.75892 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4433 1.2502 -0.5344 5 6 3.4433 -0.0538 -1.3584 6 6 2.0015 -0.5952 -1.2526 7 1 1.4099 -0.2713 -2.1088 8 6 2.0078 -2.0993 -1.1585 9 8 1.9401 -2.6394 -0.0747 10 7 2.0889 -2.8443 -2.2787 11 6 2.0944 -4.3064 -2.1872 12 6 3.5228 -4.7979 -1.9371 13 6 3.5322 -6.3280 -1.9048 14 7 3.0310 -6.8502 -3.1826 15 6 3.1550 -8.3129 -3.2385 16 6 2.8804 -8.7870 -4.6423 17 8 2.7205 -7.9808 -5.5344 18 7 2.8124 -10.1069 -4.9067 19 6 2.5630 -10.5381 -6.1839 20 1 2.4208 -9.8203 -6.9782 21 6 2.4934 -11.8988 -6.4566 22 7 2.2540 -12.3123 -7.6808 23 14 2.7403 -13.1405 -5.0830 24 1 1.4307 -13.4519 -4.4559 25 1 3.3306 -14.3840 -5.6400 26 1 3.6559 -12.5726 -4.0611 27 6 1.6442 -6.4301 -3.4205 28 6 1.5787 -4.9032 -3.4996 29 1 -0.3633 -1.0245 -0.0821 30 1 -0.3633 0.5832 -0.8461 31 1 -0.3633 0.4410 0.9282 32 1 1.4099 2.0212 -0.6601 33 1 2.0078 1.7917 1.0122 34 1 4.1483 1.1749 0.2935 35 1 3.6954 2.0994 -1.1695 36 1 4.1484 -0.7691 -0.9350 37 1 3.6937 0.1555 -2.3984 38 1 2.1428 -2.4123 -3.1456 39 1 1.4513 -4.6224 -1.3659 40 1 4.1737 -4.4478 -2.7382 41 1 3.8791 -4.4107 -0.9825 42 1 2.8928 -6.6772 -1.0940 43 1 4.5504 -6.6815 -1.7424 44 1 4.1646 -8.6033 -2.9479 45 1 2.4361 -8.7648 -2.5551 46 1 2.9405 -10.7515 -4.1934 47 1 2.2057 -13.2622 -7.8712 48 1 1.0137 -6.7788 -2.6026 49 1 1.2911 -6.8579 -4.3588 50 1 0.5468 -4.5910 -3.6607 51 1 2.1982 -4.5548 -4.3260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226608889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:07 Heat of formation + Delta-G solvation = -81.408367 kcal Electronic energy + Delta-G solvation = -29694.394936 eV Core-core repulsion = 25627.506776 eV Total energy + Delta-G solvation = -4066.888161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42801 -40.64813 -39.54987 -38.56580 -36.20449 -35.73223 -33.74839 -33.28392 -32.79403 -31.83974 -30.39303 -28.65882 -26.68032 -26.21537 -24.44428 -24.12132 -22.80350 -21.89843 -21.27098 -21.24240 -20.66738 -20.17938 -18.38183 -17.76587 -17.54300 -16.89448 -16.79482 -16.51216 -16.35082 -15.86310 -15.73033 -15.44175 -15.25511 -15.13004 -14.96260 -14.74445 -14.57640 -14.32529 -14.23722 -14.10267 -13.81979 -13.36233 -13.26275 -12.99175 -12.95541 -12.73240 -12.60668 -12.47551 -12.40022 -12.31379 -12.18075 -12.05599 -11.97380 -11.82106 -11.63135 -11.54779 -11.39286 -10.74723 -10.34616 -10.21304 -10.04900 -9.47918 -9.21201 -8.39743 -5.99877 1.31073 1.35767 1.44638 1.63016 1.98206 2.03934 2.23717 2.60999 3.08560 3.16693 3.22004 3.55305 3.60914 3.72954 3.86288 3.97533 4.02849 4.07419 4.13481 4.24356 4.25770 4.34330 4.39746 4.40786 4.44720 4.50780 4.53080 4.56070 4.64320 4.71441 4.72198 4.87839 4.91388 4.94051 4.97598 5.01629 5.04186 5.10863 5.12536 5.23633 5.29678 5.50964 5.54839 5.75394 5.91342 5.96522 6.03523 6.20139 6.60854 6.62104 6.90689 7.30262 7.42462 7.99561 8.77768 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034599 B = 0.001849 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.074423 B =15135.821144 C =15212.253620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.521 5.521 3 C 0.032 3.968 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.044 3.956 7 H 0.094 0.906 8 C 0.520 3.480 9 O -0.565 6.565 10 N -0.715 5.715 11 C 0.154 3.846 12 C -0.115 4.115 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.053 3.947 16 C 0.453 3.547 17 O -0.602 6.602 18 N -0.594 5.594 19 C -0.324 4.324 20 H 0.057 0.943 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.962 3.038 24 H -0.259 1.259 25 H -0.276 1.276 26 H -0.232 1.232 27 C 0.059 3.941 28 C -0.107 4.107 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.413 0.587 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.075 0.925 46 H 0.388 0.612 47 H 0.278 0.722 48 H 0.036 0.964 49 H 0.062 0.938 50 H 0.081 0.919 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 25.624 18.134 31.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.246 5.246 3 C -0.096 4.096 4 C -0.158 4.158 5 C -0.149 4.149 6 C -0.068 4.068 7 H 0.111 0.889 8 C 0.307 3.693 9 O -0.442 6.442 10 N -0.367 5.367 11 C 0.049 3.951 12 C -0.153 4.153 13 C -0.067 4.067 14 N -0.258 5.258 15 C -0.078 4.078 16 C 0.240 3.760 17 O -0.485 6.485 18 N -0.236 5.236 19 C -0.453 4.453 20 H 0.075 0.925 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.183 1.183 25 H -0.201 1.201 26 H -0.155 1.155 27 C -0.070 4.070 28 C -0.146 4.146 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.249 0.751 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.093 0.907 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.054 0.946 49 H 0.081 0.919 50 H 0.100 0.900 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.119 25.536 18.284 31.427 hybrid contribution -0.909 -1.072 -0.412 1.465 sum 0.209 24.465 17.871 30.298 Atomic orbital electron populations 1.22494 0.87091 1.01388 1.02176 1.65040 1.09123 1.16555 1.33870 1.23230 0.95693 0.88369 1.02260 1.22309 0.96211 0.97346 0.99939 1.22272 0.92605 0.97506 1.02508 1.22704 0.99516 0.90499 0.94068 0.88854 1.20803 0.75004 0.89842 0.83674 1.90684 1.49930 1.74421 1.29176 1.46011 1.74734 1.06351 1.09604 1.20848 0.96871 0.79547 0.97822 1.21847 0.96736 0.94609 1.02157 1.22114 1.01159 0.94968 0.88489 1.61479 1.21765 1.08831 1.33758 1.21825 1.04445 0.89149 0.92371 1.20841 0.81423 0.81887 0.91802 1.90525 1.54364 1.54369 1.49286 1.42065 1.65923 1.06623 1.09008 1.18991 1.47587 0.92669 0.86088 0.92489 1.26077 0.96383 0.99051 0.99891 1.69800 1.49430 1.16741 1.21605 0.85395 0.80022 0.77891 0.78417 1.18339 1.20102 1.15509 1.22027 0.88263 0.95997 1.00691 1.21698 1.02079 0.93948 0.96844 0.93188 0.93612 0.90275 0.92048 0.89512 0.91140 0.88631 0.92142 0.87950 0.75070 0.91410 0.90782 0.91365 0.94193 0.88983 0.86151 0.90704 0.77640 0.91234 0.94600 0.91918 0.89998 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.44 127.69 1.21 1.46 16 2 N -0.52 -8.95 4.94 -887.04 -4.38 -13.33 16 3 C 0.03 0.35 6.49 86.45 0.56 0.91 16 4 C -0.12 -1.11 7.00 31.49 0.22 -0.89 16 5 C -0.11 -1.26 6.54 31.49 0.21 -1.06 16 6 C 0.04 0.66 2.67 44.32 0.12 0.78 16 7 H 0.09 0.98 7.97 -2.39 -0.02 0.96 16 8 C 0.52 11.06 6.67 87.66 0.58 11.64 16 9 O -0.56 -17.25 16.26 -3.05 -0.05 -17.30 16 10 N -0.71 -12.67 5.08 -442.17 -2.25 -14.91 16 11 C 0.15 3.35 2.52 45.07 0.11 3.47 16 12 C -0.11 -2.51 5.67 30.65 0.17 -2.34 16 13 C 0.06 1.39 5.46 86.33 0.47 1.86 16 14 N -0.53 -15.94 4.35 -900.91 -3.92 -19.86 16 15 C 0.05 1.65 5.45 85.56 0.47 2.12 16 16 C 0.45 20.27 7.31 87.66 0.64 20.91 16 17 O -0.60 -32.61 14.29 -3.09 -0.04 -32.66 16 18 N -0.59 -27.92 5.09 -306.98 -1.56 -29.48 16 19 C -0.32 -18.89 10.16 84.04 0.85 -18.04 16 20 H 0.06 3.95 7.39 -2.91 -0.02 3.92 16 21 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 22 N -0.93 -56.34 13.96 21.66 0.30 -56.04 16 23 Si 0.96 38.92 27.74 68.60 1.90 40.82 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 27 C 0.06 1.76 5.12 86.33 0.44 2.20 16 28 C -0.11 -2.53 5.57 30.65 0.17 -2.36 16 29 H 0.05 0.94 7.95 -2.38 -0.02 0.93 16 30 H 0.05 0.51 7.97 -2.39 -0.02 0.49 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 0.49 7.90 -2.39 -0.02 0.47 16 33 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 0.92 7.86 -2.39 -0.02 0.90 16 37 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.41 5.05 8.60 -92.70 -0.80 4.25 16 39 H 0.07 1.74 7.58 -2.39 -0.02 1.72 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.09 1.86 8.01 -2.39 -0.02 1.84 16 44 H 0.12 3.09 7.98 -2.39 -0.02 3.08 16 45 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 46 H 0.39 15.19 5.76 -92.71 -0.53 14.66 16 47 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 48 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.06 2.40 6.06 -2.39 -0.01 2.38 16 50 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 51 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -81.24 401.03 -3.76 -85.01 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -0.46 Total: 37.48 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 6.70 Total: 20.28 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -11.81 Total: -133.62 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.09 Total: -49.96 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.90 Total: 40.82 kcal Total: -81.24 -3.76 -85.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226608889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.599 kcal (2) G-P(sol) polarization free energy of solvation -81.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds