Wall clock time and date at job start Tue Mar 31 2020 21:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46948 * 2 1 4 4 N 1.46497 * 109.47167 * 239.99905 * 2 1 3 5 5 C 1.34779 * 119.99932 * 85.00040 * 4 2 1 6 6 N 1.34773 * 120.00122 * 179.97438 * 5 4 2 7 7 O 1.21585 * 120.00286 * 359.97438 * 5 4 2 8 8 C 1.50693 * 109.47024 * 120.00016 * 2 1 3 9 9 O 1.21279 * 120.00121 * 101.81275 * 8 2 1 10 10 N 1.34783 * 119.99948 * 281.81296 * 8 2 1 11 11 C 1.46919 * 120.63116 * 354.75699 * 10 8 2 12 12 C 1.53627 * 108.54491 * 126.36964 * 11 10 8 13 13 C 1.53038 * 109.23836 * 54.85478 * 12 11 10 14 14 C 1.53002 * 109.45816 * 178.49230 * 13 12 11 15 15 H 1.08995 * 109.87343 * 172.62688 * 14 13 12 16 16 C 1.54330 * 109.88317 * 293.80128 * 14 13 12 17 17 C 1.55156 * 102.94304 * 141.61250 * 16 14 13 18 18 C 1.54913 * 101.57993 * 324.49543 * 17 16 14 19 19 N 1.47018 * 109.88431 * 51.61081 * 14 13 12 20 20 C 1.36937 * 125.64923 * 61.67459 * 19 14 13 21 21 H 1.08000 * 120.00030 * 299.38853 * 20 19 14 22 22 C 1.38806 * 119.99739 * 119.39214 * 20 19 14 23 23 N 1.31626 * 119.99934 * 181.50188 * 22 20 19 24 24 Si 1.86798 * 120.00284 * 1.49966 * 22 20 19 25 25 H 1.48503 * 109.47049 * 93.16013 * 24 22 20 26 26 H 1.48501 * 109.47198 * 213.15767 * 24 22 20 27 27 H 1.48501 * 109.47145 * 333.15775 * 24 22 20 28 28 C 1.53039 * 109.54232 * 298.51331 * 13 12 11 29 29 C 1.46926 * 120.62926 * 175.04136 * 10 8 2 30 30 H 1.08999 * 109.46739 * 304.95379 * 1 2 3 31 31 H 1.09004 * 109.47011 * 64.94502 * 1 2 3 32 32 H 1.08996 * 109.47267 * 184.94746 * 1 2 3 33 33 H 0.96993 * 120.00299 * 265.00541 * 4 2 1 34 34 H 0.97002 * 119.99944 * 0.02562 * 6 5 4 35 35 H 0.97001 * 120.00262 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.58894 * 246.20646 * 11 10 8 37 37 H 1.09001 * 109.58833 * 6.63171 * 11 10 8 38 38 H 1.09000 * 109.63238 * 294.86932 * 12 11 10 39 39 H 1.08996 * 109.43441 * 174.72632 * 12 11 10 40 40 H 1.09000 * 109.46183 * 58.53622 * 13 12 11 41 41 H 1.08998 * 110.71696 * 259.97490 * 16 14 13 42 42 H 1.08999 * 110.72077 * 23.24410 * 16 14 13 43 43 H 1.09000 * 110.99929 * 206.42476 * 17 16 14 44 44 H 1.08997 * 111.03792 * 82.58352 * 17 16 14 45 45 H 1.08999 * 110.36988 * 278.17391 * 18 17 16 46 46 H 1.08997 * 110.45820 * 155.89238 * 18 17 16 47 47 H 0.96997 * 120.00340 * 180.02562 * 23 22 20 48 48 H 1.08996 * 109.49723 * 301.41486 * 28 13 12 49 49 H 1.08998 * 109.52165 * 181.33546 * 28 13 12 50 50 H 1.09003 * 109.58852 * 353.36821 * 29 10 8 51 51 H 1.08998 * 109.58862 * 113.80136 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 7 2.5969 -0.6534 -3.4574 7 8 1.8575 1.1613 -2.4119 8 6 2.0324 -0.7104 1.2304 9 8 2.4372 -1.8507 1.1495 10 7 2.0317 -0.0784 2.4209 11 6 1.6530 1.3379 2.5163 12 6 0.5394 1.4763 3.5655 13 6 1.0108 0.8618 4.8854 14 6 -0.0803 1.0304 5.9446 15 1 0.1916 0.4832 6.8471 16 6 -0.2682 2.5271 6.2710 17 6 -1.8043 2.6538 6.4492 18 6 -2.3240 1.6497 5.3902 19 7 -1.3625 0.5326 5.4253 20 6 -1.6211 -0.7554 5.0390 21 1 -1.0552 -1.2018 4.2346 22 6 -2.6105 -1.4872 5.6810 23 7 -2.8390 -2.7349 5.3296 24 14 -3.6177 -0.7013 7.0439 25 1 -4.8591 -0.1220 6.4708 26 1 -3.9723 -1.7307 8.0539 27 1 -2.8225 0.3733 7.6904 28 6 1.2987 -0.6275 4.6827 29 6 2.4156 -0.7912 3.6470 30 1 -0.3633 0.5888 0.8423 31 1 -0.3633 0.4352 -0.9310 32 1 -0.3633 -1.0238 0.0886 33 1 2.2490 -1.6317 -1.1526 34 1 2.8276 -1.5946 -3.4139 35 1 2.6899 -0.1695 -4.2929 36 1 2.5184 1.9280 2.8180 37 1 1.2906 1.6853 1.5488 38 1 -0.3548 0.9567 3.2211 39 1 0.3122 2.5317 3.7161 40 1 1.9190 1.3654 5.2166 41 1 0.2499 2.7885 7.1936 42 1 0.0767 3.1483 5.4444 43 1 -2.1412 3.6661 6.2262 44 1 -2.1077 2.3553 7.4526 45 1 -2.3337 2.1109 4.4026 46 1 -3.3219 1.2997 5.6545 47 1 -3.5306 -3.2462 5.7780 48 1 0.3974 -1.1273 4.3278 49 1 1.6117 -1.0700 5.6283 50 1 2.5565 -1.8492 3.4257 51 1 3.3418 -0.3712 4.0391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230548370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:00 Heat of formation + Delta-G solvation = -41.324352 kcal Electronic energy + Delta-G solvation = -31836.707052 eV Core-core repulsion = 27771.557065 eV Total energy + Delta-G solvation = -4065.149987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.63693 -39.60086 -38.51472 -36.41816 -35.00211 -33.87004 -32.76285 -32.62927 -30.96770 -30.05195 -29.75368 -28.02130 -25.13242 -24.44388 -23.45540 -22.95095 -21.37661 -20.75161 -20.23788 -19.39546 -18.88774 -18.27205 -17.45099 -17.05963 -16.57236 -15.88886 -15.78134 -15.39314 -14.99956 -14.70810 -14.60131 -14.18249 -13.99080 -13.84976 -13.36530 -13.19324 -13.14324 -12.92716 -12.57476 -12.45277 -12.24428 -12.13984 -11.85648 -11.59995 -11.50591 -11.26518 -11.08071 -10.98439 -10.82588 -10.59021 -10.48216 -10.44513 -10.18833 -9.88929 -9.87695 -9.83009 -9.68113 -9.53756 -9.30747 -9.16301 -8.53334 -8.37877 -6.38557 -5.92044 -3.79079 2.55512 2.68888 3.05952 3.29838 3.30909 3.42515 3.49613 4.34542 4.44365 4.48735 4.96226 5.03420 5.12433 5.12976 5.14748 5.30729 5.37769 5.47204 5.53136 5.60591 5.61354 5.65902 5.71620 5.80982 5.85225 5.90549 6.01543 6.14978 6.16976 6.22688 6.25724 6.28066 6.35808 6.38828 6.39669 6.54434 6.60252 6.63671 6.73740 6.77581 6.85175 6.87052 6.92561 7.05829 7.26235 7.53202 7.82223 8.12025 8.21470 8.47581 8.53568 8.85738 9.60298 10.35044 11.08854 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.003386 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.711660 B = 8267.990393 C = 8684.068277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 H 0.109 0.891 4 N -0.728 5.728 5 C 0.709 3.291 6 N -0.867 5.867 7 O -0.597 6.597 8 C 0.515 3.485 9 O -0.546 6.546 10 N -0.595 5.595 11 C 0.099 3.901 12 C -0.121 4.121 13 C -0.084 4.084 14 C 0.160 3.840 15 H 0.039 0.961 16 C -0.128 4.128 17 C -0.139 4.139 18 C 0.120 3.880 19 N -0.597 5.597 20 C -0.258 4.258 21 H 0.083 0.917 22 C 0.050 3.950 23 N -0.900 5.900 24 Si 0.892 3.108 25 H -0.288 1.288 26 H -0.303 1.303 27 H -0.259 1.259 28 C -0.144 4.144 29 C 0.114 3.886 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.406 0.594 34 H 0.398 0.602 35 H 0.414 0.586 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.036 0.964 47 H 0.264 0.736 48 H 0.116 0.884 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.443 7.727 -8.639 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.127 0.873 4 N -0.386 5.386 5 C 0.407 3.593 6 N -0.435 5.435 7 O -0.476 6.476 8 C 0.301 3.699 9 O -0.424 6.424 10 N -0.327 5.327 11 C -0.023 4.023 12 C -0.159 4.159 13 C -0.104 4.104 14 C 0.054 3.946 15 H 0.057 0.943 16 C -0.166 4.166 17 C -0.177 4.177 18 C -0.005 4.005 19 N -0.324 5.324 20 C -0.386 4.386 21 H 0.100 0.900 22 C -0.153 4.153 23 N -0.539 5.539 24 Si 0.722 3.278 25 H -0.215 1.215 26 H -0.231 1.231 27 H -0.183 1.183 28 C -0.182 4.182 29 C -0.008 4.008 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.243 0.757 34 H 0.226 0.774 35 H 0.246 0.754 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.134 0.866 49 H 0.083 0.917 50 H 0.104 0.896 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.248 7.858 -8.521 15.472 hybrid contribution -0.463 -0.371 0.539 0.801 sum 9.786 7.486 -7.983 14.681 Atomic orbital electron populations 1.22143 0.92151 1.03786 1.03707 1.20641 0.96046 0.97232 0.82509 0.87341 1.44859 1.71126 1.14514 1.08105 1.15865 0.77961 0.84870 0.80592 1.42938 1.73617 1.14983 1.11993 1.90962 1.57493 1.14374 1.84734 1.20446 0.78029 0.86656 0.84719 1.90653 1.48076 1.18242 1.85467 1.47984 1.66004 1.11836 1.06870 1.22071 0.98570 0.80756 1.00928 1.21981 0.98279 1.01013 0.94581 1.21427 0.97741 0.95508 0.95772 1.21118 0.88157 0.91504 0.93807 0.94286 1.22627 0.96102 0.97459 1.00389 1.22792 0.96060 0.98664 1.00166 1.21871 0.94092 0.89371 0.95128 1.44437 1.07228 1.05163 1.75590 1.18443 1.19900 0.85607 1.14694 0.90038 1.26027 0.98642 0.94359 0.96279 1.69792 1.32800 1.08366 1.42901 0.86585 0.79950 0.78825 0.82471 1.21472 1.23114 1.18293 1.22401 1.00541 0.97386 0.97834 1.21734 0.97411 0.97777 0.83885 0.90228 0.90948 0.91454 0.75728 0.77437 0.75388 0.91663 0.90079 0.89372 0.91588 0.93078 0.92344 0.91535 0.92222 0.91867 0.95703 0.94624 0.92592 0.86646 0.91702 0.89552 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.26 37.16 0.34 -1.80 16 2 C 0.14 1.93 2.12 -69.08 -0.15 1.79 16 3 H 0.11 1.42 6.09 -51.93 -0.32 1.11 16 4 N -0.73 -8.83 5.04 -59.82 -0.30 -9.14 16 5 C 0.71 8.73 8.80 -86.92 -0.77 7.97 16 6 N -0.87 -6.64 8.88 27.63 0.25 -6.40 16 7 O -0.60 -9.62 16.84 5.29 0.09 -9.53 16 8 C 0.51 7.93 6.95 -10.99 -0.08 7.85 16 9 O -0.55 -9.80 15.33 5.56 0.09 -9.71 16 10 N -0.59 -8.68 2.97 -172.51 -0.51 -9.19 16 11 C 0.10 1.24 5.88 -3.49 -0.02 1.22 16 12 C -0.12 -1.73 4.93 -26.39 -0.13 -1.87 16 13 C -0.08 -1.31 1.91 -90.58 -0.17 -1.48 16 14 C 0.16 2.88 2.93 -66.95 -0.20 2.68 16 15 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.13 -1.91 6.30 -24.89 -0.16 -2.07 16 17 C -0.14 -2.26 6.96 -24.58 -0.17 -2.43 16 18 C 0.12 2.35 6.08 -2.52 -0.02 2.33 16 19 N -0.60 -12.75 1.32 -162.57 -0.21 -12.97 16 20 C -0.26 -6.58 8.76 -15.06 -0.13 -6.71 16 21 H 0.08 2.26 5.50 -52.49 -0.29 1.97 16 22 C 0.05 1.37 5.50 -17.43 -0.10 1.28 16 23 N -0.90 -26.38 13.97 55.49 0.78 -25.60 16 24 Si 0.89 21.67 25.29 -169.99 -4.30 17.37 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.26 -6.01 5.72 56.52 0.32 -5.69 16 28 C -0.14 -2.48 4.98 -26.61 -0.13 -2.61 16 29 C 0.11 1.74 6.42 -3.71 -0.02 1.71 16 30 H 0.08 1.07 7.06 -51.93 -0.37 0.70 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.41 4.58 7.74 -40.82 -0.32 4.26 16 34 H 0.40 1.99 8.84 -40.82 -0.36 1.63 16 35 H 0.41 2.59 8.93 -40.82 -0.36 2.23 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.91 4.87 -51.93 -0.25 0.66 16 38 H 0.09 1.56 7.24 -51.93 -0.38 1.18 16 39 H 0.07 0.87 6.40 -51.93 -0.33 0.53 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.89 6.16 -51.93 -0.32 0.57 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.10 7.16 -51.93 -0.37 0.73 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.04 0.77 4.95 -51.93 -0.26 0.51 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.12 2.49 4.22 -51.93 -0.22 2.27 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.09 1.45 7.04 -51.93 -0.37 1.09 16 51 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -32.40 379.30 -8.26 -40.66 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -7.95 Total: 10.92 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -1.89 Total: 7.86 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.01 Total: -63.29 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.17 Total: -19.24 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.30 Total: 17.37 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.40 -8.26 -40.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230548370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.666 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds