Wall clock time and date at job start Tue Mar 31 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00321 * 2 1 4 4 C 1.52993 * 109.47602 * 270.00624 * 3 2 1 5 5 H 1.09009 * 112.74987 * 75.76720 * 4 3 2 6 6 C 1.53511 * 113.47952 * 206.61616 * 4 3 2 7 7 C 1.53511 * 83.57498 * 140.78924 * 6 4 3 8 8 N 1.47476 * 87.93358 * 333.97804 * 7 6 4 9 9 C 1.46899 * 111.00110 * 138.70275 * 8 7 6 10 10 C 1.50705 * 109.47430 * 74.02698 * 9 8 7 11 11 O 1.21293 * 119.99670 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00322 * 180.02562 * 10 9 8 13 13 C 1.37096 * 119.99984 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99590 * 0.02562 * 13 12 10 15 15 C 1.38943 * 119.99849 * 180.02562 * 13 12 10 16 16 N 1.31416 * 120.00314 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99733 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47276 * 89.99927 * 17 15 13 19 19 H 1.48505 * 109.46928 * 209.99411 * 17 15 13 20 20 H 1.48499 * 109.47237 * 329.99586 * 17 15 13 21 21 C 1.34772 * 119.99930 * 180.02562 * 2 1 3 22 22 O 1.21276 * 120.00432 * 184.47585 * 21 2 1 23 23 C 1.50706 * 119.99833 * 4.47014 * 21 2 1 24 24 H 1.08996 * 109.88318 * 351.90737 * 23 21 2 25 25 C 1.54323 * 110.02051 * 113.02185 * 23 21 2 26 26 C 1.55134 * 103.01821 * 141.76511 * 25 23 21 27 27 C 1.54910 * 101.65693 * 324.34577 * 26 25 23 28 28 N 1.47438 * 109.88953 * 230.86738 * 23 21 2 29 29 C 1.46904 * 111.00144 * 3.69267 * 28 23 21 30 30 H 1.09002 * 109.47310 * 264.06370 * 1 2 3 31 31 H 1.09007 * 109.47462 * 24.05787 * 1 2 3 32 32 H 1.08997 * 109.47725 * 144.06084 * 1 2 3 33 33 H 1.09007 * 109.46722 * 30.00689 * 3 2 1 34 34 H 1.08997 * 109.47271 * 150.00333 * 3 2 1 35 35 H 1.08995 * 114.17236 * 254.44044 * 6 4 3 36 36 H 1.09005 * 114.16682 * 27.14636 * 6 4 3 37 37 H 1.08997 * 113.47727 * 219.21024 * 7 6 4 38 38 H 1.09001 * 113.47622 * 88.74966 * 7 6 4 39 39 H 1.08996 * 109.47733 * 194.03072 * 9 8 7 40 40 H 1.09007 * 109.47292 * 314.03163 * 9 8 7 41 41 H 0.97001 * 119.99640 * 0.02562 * 12 10 9 42 42 H 0.96997 * 119.99583 * 180.02562 * 16 15 13 43 43 H 1.08996 * 110.70575 * 260.14515 * 25 23 21 44 44 H 1.09005 * 110.70784 * 23.38180 * 25 23 21 45 45 H 1.09003 * 110.99357 * 82.43541 * 26 25 23 46 46 H 1.09001 * 110.99338 * 206.21802 * 26 25 23 47 47 H 1.09002 * 110.37125 * 278.24383 * 27 26 25 48 48 H 1.08999 * 110.37639 * 155.90166 * 27 26 25 49 49 H 1.09005 * 109.46677 * 50.10200 * 29 28 23 50 50 H 1.08989 * 109.47316 * 290.10023 * 29 28 23 51 51 H 1.08999 * 109.47405 * 170.09484 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 1.5623 2.1177 -1.9221 6 6 3.6941 2.5994 -1.5994 7 6 3.8976 1.7909 -2.8884 8 7 3.1442 0.6926 -2.2551 9 6 2.2217 0.0668 -3.2118 10 6 3.0032 -0.7806 -4.1825 11 8 4.2100 -0.8562 -4.0864 12 7 2.3613 -1.4545 -5.1573 13 6 3.0723 -2.2258 -6.0400 14 1 4.1468 -2.2938 -5.9538 15 6 2.4106 -2.9201 -7.0453 16 7 1.1032 -2.8378 -7.1498 17 14 3.3793 -3.9716 -8.2475 18 1 3.4974 -5.3524 -7.7138 19 1 2.6754 -4.0049 -9.5547 20 1 4.7350 -3.3937 -8.4298 21 6 2.1388 -1.1672 -0.0005 22 8 3.3488 -1.1689 0.0814 23 6 1.3887 -2.4703 -0.1028 24 1 0.3169 -2.2883 -0.0235 25 6 1.7061 -3.1585 -1.4471 26 6 1.7798 -4.6595 -1.0624 27 6 2.4133 -4.5901 0.3495 28 7 1.8230 -3.3846 0.9692 29 6 2.7854 -2.7276 1.8637 30 1 -0.3634 -0.1063 1.0222 31 1 -0.3634 0.9384 -0.4190 32 1 -0.3634 -0.8320 -0.6031 33 1 1.6085 2.0283 0.5140 34 1 3.1499 1.1383 0.5138 35 1 3.4706 3.6534 -1.7642 36 1 4.4607 2.4330 -0.8425 37 1 4.9407 1.5443 -3.0862 38 1 3.3938 2.2203 -3.7544 39 1 1.5100 -0.5594 -2.6740 40 1 1.6835 0.8418 -3.7578 41 1 1.3963 -1.3937 -5.2344 42 1 0.6413 -3.3228 -7.8514 43 1 0.9069 -2.9841 -2.1675 44 1 2.6627 -2.8139 -1.8401 45 1 0.7843 -5.1017 -1.0223 46 1 2.4210 -5.2084 -1.7521 47 1 3.4959 -4.4870 0.2749 48 1 2.1547 -5.4784 0.9257 49 1 2.3876 -1.7632 2.1800 50 1 3.7272 -2.5768 1.3364 51 1 2.9552 -3.3551 2.7386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231253962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:37 Heat of formation + Delta-G solvation = -0.228468 kcal Electronic energy + Delta-G solvation = -32443.530298 eV Core-core repulsion = 28380.162362 eV Total energy + Delta-G solvation = -4063.367936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.85546 -39.86100 -37.84427 -37.33208 -35.35222 -33.88315 -31.93546 -31.35045 -30.81488 -29.85316 -28.34407 -26.45422 -25.73532 -25.44955 -23.67441 -23.56875 -21.45065 -21.10875 -19.49327 -19.23077 -18.69781 -17.87810 -17.41148 -16.28496 -16.02889 -15.80707 -15.70396 -15.27152 -15.02950 -14.58939 -14.50831 -14.05996 -13.87271 -13.75259 -13.45531 -13.42347 -13.16717 -12.74954 -12.64051 -12.38243 -12.24841 -12.10320 -11.83326 -11.63377 -11.48528 -11.44750 -11.34289 -11.26030 -11.05795 -11.00895 -10.97474 -10.72179 -10.57081 -10.40895 -10.38520 -10.19845 -9.65727 -9.48091 -8.80847 -8.40889 -8.16924 -8.07647 -7.93839 -6.40278 -3.80535 2.78832 3.04468 3.18154 3.26644 3.32745 3.92838 4.07916 4.12404 4.27529 4.52238 4.57608 4.77301 4.85760 4.87718 5.00873 5.06011 5.12606 5.22530 5.25648 5.30229 5.32273 5.39027 5.46980 5.52562 5.55897 5.61847 5.62743 5.71815 5.74512 5.79692 5.85529 5.86902 5.92494 6.04324 6.11597 6.14405 6.17389 6.20417 6.30158 6.35867 6.44131 6.57328 6.76059 6.88777 6.99583 7.34500 7.49469 7.56547 8.07855 8.42338 8.64031 9.20472 9.56134 10.09155 10.77620 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.004660 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.782736 B = 6006.689526 C = 7811.712947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.618 5.618 3 C 0.136 3.864 4 C 0.001 3.999 5 H 0.072 0.928 6 C -0.137 4.137 7 C 0.011 3.989 8 N -0.417 5.417 9 C 0.013 3.987 10 C 0.447 3.553 11 O -0.573 6.573 12 N -0.567 5.567 13 C -0.295 4.295 14 H 0.101 0.899 15 C 0.023 3.977 16 N -0.903 5.903 17 Si 0.927 3.073 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.512 3.488 22 O -0.505 6.505 23 C 0.047 3.953 24 H 0.099 0.901 25 C -0.126 4.126 26 C -0.125 4.125 27 C 0.039 3.961 28 N -0.511 5.511 29 C 0.007 3.993 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.390 0.610 42 H 0.270 0.730 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.052 0.948 48 H 0.080 0.920 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 6.299 15.654 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.353 5.353 3 C 0.013 3.987 4 C -0.110 4.110 5 H 0.090 0.910 6 C -0.176 4.176 7 C -0.118 4.118 8 N -0.139 5.139 9 C -0.119 4.119 10 C 0.232 3.768 11 O -0.455 6.455 12 N -0.204 5.204 13 C -0.425 4.425 14 H 0.119 0.881 15 C -0.178 4.178 16 N -0.545 5.545 17 Si 0.754 3.246 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.195 1.195 21 C 0.298 3.702 22 O -0.378 6.378 23 C -0.064 4.064 24 H 0.117 0.883 25 C -0.165 4.165 26 C -0.163 4.163 27 C -0.088 4.088 28 N -0.236 5.236 29 C -0.141 4.141 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.223 0.777 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.070 0.930 48 H 0.099 0.901 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.504 5.410 16.240 17.700 hybrid contribution -0.371 0.389 -1.792 1.871 sum -4.874 5.798 14.448 16.314 Atomic orbital electron populations 1.21825 0.80085 1.03096 1.01643 1.47773 1.06394 1.06055 1.75057 1.21400 0.97839 0.84335 0.95109 1.23920 0.96809 0.93794 0.96478 0.90970 1.23179 0.97456 0.97686 0.99234 1.23575 1.01969 0.91124 0.95165 1.68916 1.14430 1.16849 1.13727 1.22469 0.95768 0.98766 0.94916 1.19660 0.88488 0.84827 0.83820 1.90542 1.14106 1.66700 1.74197 1.41850 1.09604 1.42195 1.26746 1.19661 0.93575 1.22306 1.06910 0.88109 1.25207 0.95728 0.98418 0.98483 1.69609 1.07098 1.43360 1.34433 0.85904 0.79477 0.79952 0.79252 1.20410 1.20966 1.19494 1.20812 0.88138 0.85088 0.76112 1.90692 1.13787 1.86468 1.46849 1.22754 1.00268 0.90152 0.93208 0.88295 1.22731 1.04032 0.94980 0.94725 1.22663 1.01503 0.96286 0.95836 1.23137 0.97898 0.93119 0.94657 1.64066 1.38266 1.05231 1.16001 1.22910 0.96496 0.98155 0.96507 0.92640 0.91049 0.91066 0.90775 0.89347 0.91009 0.88886 0.89243 0.92094 0.90042 0.93455 0.77736 0.91979 0.90248 0.89547 0.90690 0.90197 0.92961 0.90121 0.92402 0.91499 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 9.91 59.84 0.59 1.26 16 2 N -0.62 -7.55 2.74 -181.58 -0.50 -8.05 16 3 C 0.14 1.58 5.59 -4.05 -0.02 1.55 16 4 C 0.00 0.01 3.37 -71.44 -0.24 -0.23 16 5 H 0.07 0.83 7.77 -51.92 -0.40 0.43 16 6 C -0.14 -1.65 8.00 -26.20 -0.21 -1.86 16 7 C 0.01 0.17 6.71 -7.55 -0.05 0.12 16 8 N -0.42 -7.27 4.88 -237.96 -1.16 -8.43 16 9 C 0.01 0.24 5.31 -4.97 -0.03 0.22 16 10 C 0.45 10.79 7.62 -10.98 -0.08 10.71 16 11 O -0.57 -16.08 15.34 5.55 0.09 -16.00 16 12 N -0.57 -14.40 5.29 -10.96 -0.06 -14.46 16 13 C -0.29 -8.25 9.68 -14.94 -0.14 -8.40 16 14 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 16 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 17 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.51 7.79 3.85 -10.98 -0.04 7.75 16 22 O -0.50 -9.57 12.96 5.56 0.07 -9.50 16 23 C 0.05 0.67 3.40 -67.87 -0.23 0.44 16 24 H 0.10 1.20 5.62 -51.93 -0.29 0.91 16 25 C -0.13 -2.02 6.37 -24.91 -0.16 -2.18 16 26 C -0.12 -1.75 7.08 -24.59 -0.17 -1.92 16 27 C 0.04 0.53 6.73 -2.30 -0.02 0.52 16 28 N -0.51 -7.11 5.44 -232.95 -1.27 -8.38 16 29 C 0.01 0.10 8.17 60.07 0.49 0.59 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.50 8.03 -51.93 -0.42 0.08 16 32 H 0.07 0.62 6.24 -51.93 -0.32 0.30 16 33 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.09 1.19 7.10 -51.93 -0.37 0.82 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.14 7.94 -51.93 -0.41 0.72 16 37 H 0.09 1.66 8.13 -51.93 -0.42 1.24 16 38 H 0.06 0.96 7.70 -51.93 -0.40 0.56 16 39 H 0.08 1.43 7.59 -51.93 -0.39 1.04 16 40 H 0.05 0.80 7.56 -51.92 -0.39 0.41 16 41 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.09 1.76 7.75 -51.93 -0.40 1.36 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.05 0.77 7.63 -51.93 -0.40 0.37 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.06 0.80 6.92 -51.93 -0.36 0.44 16 50 H 0.07 1.10 5.80 -51.94 -0.30 0.80 16 51 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 398.06 15.07 6.00 6.00 Total: -1.00 -33.64 398.06 -10.04 -43.67 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -8.50 Total: 13.52 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -0.41 Total: 9.10 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -2.26 Total: -62.99 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: 0.16 Total: -25.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.64 -10.04 -43.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231253962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.444 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds